Array 1 21704-22186 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXLX01000001.1 Listeria monocytogenes strain PNUSAL000456 DYZ85_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 21704 29 100.0 35 ............................. AAGCCGTTTTCTGGTGGTTTTGTGATTAACTTTTC 21768 29 100.0 36 ............................. TTCATTGACTTAGAGGCTGGCGAAGTAATTTATATT 21833 29 100.0 36 ............................. TTTAGACACTTGAGAAGGAGAGCACGAGAGCTTCTT 21898 29 100.0 36 ............................. CTTGGATGAAATTCTGTAATAGTATTTTGTTTTTGT 21963 29 96.6 35 ..............A.............. GTAGTAGCTATTAAAGATAAGGTTTGGAAGGAAGG 22027 29 96.6 36 ..............A.............. ATACCTTTTGCAACTTTAAGCAACCGTGATTGGAGT 22092 29 96.6 37 ..............A.............. AATCGTCACGATGGGAAAGTCATTGATAGCGCGCCAC 22158 29 79.3 0 A.....A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 96.1 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGGAGTTTGACGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAACAGCTCTTTGAGGTAATATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCATCCATCAAACAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 162017-164295 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXLX01000005.1 Listeria monocytogenes strain PNUSAL000456 DYZ85_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 162017 36 100.0 30 .................................... TAGCTTTAATGATTTTCTTTTGTGCACCGT 162083 36 100.0 30 .................................... AATTGACAATTTTATTCAGATTAGCGTTTT 162149 36 100.0 30 .................................... TTTCACTCCGCCGATTTCATTAGCGTGAAA 162215 36 100.0 30 .................................... TTTTTAGAAGGAAACTACTATAATATAAAT 162281 36 100.0 30 .................................... TTTTGCTTCGTTTGTTGTTCATAGTTGATA 162347 36 100.0 30 .................................... AGTAAATTGTTCGAACAAACCAGTTCCGCC 162413 36 100.0 30 .................................... TATCACTCATCAAGACTTAGCTACAGCCTA 162479 36 100.0 30 .................................... CGTGGTATCCTCGTGTTCAATTATCGAATG 162545 36 100.0 30 .................................... CGGTCAAAACACTTTCATAACCTATAGTTG 162611 36 100.0 30 .................................... AATGTCTGATATGGTGTCTTTATCTCGAAT 162677 36 100.0 30 .................................... TTGTTCATATAAAAAAAACACACCTTTTGC 162743 36 100.0 30 .................................... TCCCTTCATGGAAAACCCAATCCCACGAGT 162809 36 100.0 30 .................................... AAGTCCAATAGAATTTTCCGCAGTGTACTT 162875 36 100.0 30 .................................... TTTATTGTCGTACCACGATAACTTAGTACC 162941 35 97.2 30 .....................-.............. TTATCCATCGACATGCAAACAGCGGTTACA 163006 36 100.0 30 .................................... GCGGAAGCAGGTGTTTTGTGAATGATTGAT 163072 36 100.0 30 .................................... ATACTTCAACGTATCAACTGATTATCTATT 163138 36 100.0 30 .................................... AGAAATTTGTATAAAATATTGTCCAATGTG 163204 36 100.0 30 .................................... ACGGCGCTCGCAGACAACTTACAGTCACCG 163270 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 163336 36 100.0 30 .................................... ACAGCTTTCTTTCTAGTGTTCTCCAAGTAC 163402 36 100.0 30 .................................... AAAAGGGTAAGGTAAATCTAGTTCATACAG 163468 36 100.0 30 .................................... ATATAGCAGTGATTGCTAACAATTTCAAAG 163534 36 100.0 30 .................................... CACCTCGTTAAGTTTATATTAAAACTATGT 163600 36 100.0 30 .................................... TCTAAGTTAAACATAAATTGATTAAACCTC 163666 36 100.0 30 .................................... GCAAGTGTTTAATTTGCTTCTCGGGTCATT 163732 36 100.0 30 .................................... TTACAATGGCTTATCTTATGTCCCGTTCGA 163798 36 100.0 30 .................................... AATCAGTTGAGGACCAGGAGAAAATAGCCA 163864 36 100.0 30 .................................... ATCTCCAACTGTTTCGAATACCTCGAAAGC 163930 36 100.0 30 .................................... CAACAGCACTATCAAAGAAGCGTTCGAACG 163996 36 100.0 30 .................................... TAACTCTTCTTTCGTCATATTGTCATGCGT 164062 36 100.0 30 .................................... TTATGAAGAGGTAATGCGAAAACTTGGAAG 164128 36 100.0 30 .................................... AACTTTGTTGACATTTCTAACATTTAGAAG 164194 36 97.2 30 .........T.......................... CATTGACTATATGCGAAATAGGATGGGTTA 164260 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== ============================== ================== 35 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTGCTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCCAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACCGCCTGCTCAACCACTACAAAAGAAACCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCTATTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATTCAAGAAACCTCGCCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCGTGCTAAACAAATAAAACTCTCTCGCCCACAGAGAGTTTTTTCTTTTCTTAAAAAAACAAACTCAAATTCCTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //