Array 1 19913-19583 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000026.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 19912 38 100.0 35 ...................................... ACCAGAGGAGTTCCGGCCCCTCTGAGAACAAACGC 19839 38 97.4 35 .....................................G CCCTCCCCCTTCCAGCCGGTGTATTGGTCCAAGAC 19766 38 100.0 35 ...................................... GACCGTTGCCGCTTCGTCGATGACGAGGAAATGCA 19693 38 100.0 36 ...................................... CTTCTGCATAGGCCGCCCCCTCTTGCTCACCCCCAT 19619 37 81.6 0 .......T.....T-...........G...C.T....G | ========== ====== ====== ====== ====================================== ==================================== ================== 5 38 95.8 36 GTCACAAAGAGAACACCTCAATAAAGAGGATTGAAACT # Left flank : CCGCCAGCGGGTCTTGGGCCGCAGCAAAAAACCATCACCTCGCTTTGCCGCTTCCATTATAGCACAACAGACACGGACCCAAGCACCGGATGATCGAAGGCGAAATCGTTTTTCCCCCGCCTTCCGGAATCCGGCGCCAAATTCCGAAGGGAAAAACAGCCCCTTTGTCAATTGACGAAATTGTTCCCGGGGGGTATAGTGAAAATACACAGGACGTTTCAGAAGTTTGCGGATCACCGTGAAAAATTGCCCGCATGCCTGCGTTTCCGGGTTGCGACAGAGTCCGATCCGTCCTGTGAGGAATCGATTTTGCGAACACCGGGAGCTTCGGCTCGGACCCGGGGGGTGTTCGCAAACGCGGAAACCCGCATCAGACAAGGAAAAACGGTGTTTCACCCCCTTCGCAGCAGGCGTCAGATATGAAAAAATTCGGTTTATTGGAGATGGTGTTCGCAAATCGCTCCGCGGGTCCAAGCATATCAAGGAATTCGGCGACCGCT # Right flank : TATGCCTTCCGCTTCATCCGATTGATATGGCAAAGGGAGCCACAATGAGAACATCTCAGCAGAAAATTGAAACTCCCGCCACCCACAGCGGTTCACCGGCAACCACATCAAAAAGAGAGCACCTTAATAAAAGCTCATCCTTGCGGAATGCCGGGTGAATCACAATAAGAACCCATTGGCAGAGGGATTGAAACGCTTGCATGGATGATGTCGTATTCCGGCGCAGCAATGAGCCCACCAACAAAAAGGATGGAAACAGCGAACCCTCAAGTCCACCGGGGGGGAATTCCCGGGTCACCAGGGGAACGCGCACCCACCCCCTTCAAAAACGGCGGAATCCAAGGATTCCGCCGCTGCAGCATGTAGAGAGAAGCACTTTACGCGGTCCGCGGCCGACAGAATGGTTACGATCACCGCCGCTGTGCGGGATTGAAACGGACAGGTTTCGAAGCATGGATCGGGCGGCTTCACTTTATCTGCCTCGCCTCTCCATTCGGGCC # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAAAGAGAACACCTCAATAAAGAGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.20,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 2836-3732 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000012.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2836 30 100.0 40 .............................. CTTTTTCCTCTTTACTGTACCATCTTTGGTACAGTAGTTT 2906 30 100.0 36 .............................. TTTTATAAAACCCTCGGGCGTTCCCAAAAGAAGGAT 2972 30 100.0 36 .............................. TCCTTGGCCTCTTCAAGCCCTTCGGTGACTTCCGCC 3038 30 100.0 39 .............................. GCGAACCTTTTCCATCGTGAAACCATGCTGGACCATTTC 3107 30 100.0 36 .............................. TCCTTGGCCTCTTCAAGCCCTTCGGTGACTTCCGCC 3173 30 100.0 39 .............................. GCGAACCTTTTCCATCGTGAAACCATGCTGGACCATTTC 3242 30 100.0 36 .............................. AGAGTCCACCATCTCCTGCGCGTGATCGATGGCCTT 3308 30 100.0 36 .............................. CGGCAGAAAATCGAGCGAATAACTGGAATTAAATTC 3374 30 100.0 40 .............................. ATCCACAACAATTTATTCATAGACCAGAATGCGTCCCGGA 3444 30 96.7 36 ............T................. AGTATTTGGCGGTGGTTGAATTTCAAAGAGAAAGTG 3510 30 96.7 36 .........................A.... CTTTCGCCGAACACGTTACACACATTGCACTGGAAA 3576 30 96.7 37 .........................A.... AACTTCCCTCTAGTATCAACCCCCGCATAAAGATAAG 3643 29 93.3 31 ...............-.............T ACTTCCTGAGTCTCAGTTGCGGTTCAGAAAC 3703 30 93.3 0 ....................AG........ | ========== ====== ====== ====== ============================== ======================================== ================== 14 30 98.3 37 GTTTGTAGGTTACCTATGAGGAATTGAAAC # Left flank : ACCCAAAGGCCAAGTGAATGAAGGGAACAACCATTTTCCCAATTGACGAAATTGTTCCCGAAGGGTATAGTGCAATATGTAGAGTATTAAATTGGAGGGCTTTTTCAGGGGTTTGTAGGTTACCTATGAGGAATTGAAACTTGATTGCCTCTAGTTGCTTCTCCAACTCCTGTCGACGGAGTTTGTAGGTTACCTATGAGGAATTGAAACGGAAGTAAGTATTATAAAGAAAACGGGGAGATACTGATGTTTGTAGGTTACCTATGAGGAATTGAAACATTTCCGTTCCCTGGGGCCTGGATCATGAAAAATTTGGTTTGTAGGTTACCTATGAGGAATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGTAGGTTACCTATGAGGAATTGAAACAAGGACAGGAGCCTAAATACAGCGTCTGCATCATG # Right flank : CTAGGCTAAAGCACCAATAGTCGCCGTTTTTTATTTCGGAGGGCTTTATGACGGGAAGCTGCACAGGGCGATGGTTTACGGCATTGACGGGATCATCGTCGAGGTGGAAGTCGACATCCATAACGGCTTGCCCGGGTGGGGTAGTTTACAAGTTCCGCCGGAGATTCGCGAGGGAGAAGAAGCTCGGGATCTGGCAGTGTCCGGGGTACGTGACGGATGAAGGATTCAACAAGGACAAGTGGTGCAAGGATGGAGCCGAAAAGAAGCCGGATGCGGGTTATACTGGACCGTATAACCCTAAAGGCCCCGACCGAGACTGCTCCGACTTCGCGACCCGAGCCGAAGCCCAAGCCTTTTATTAGGCGGCCTGGGGACCGGAACGGAATCTCCACCGCCAAGTCCCGGACAAATAACGGCGCAGCCTGTGAGTCCCTCCCACGAAGGGCTTTTTTATGCCAAAAGCGGTCCATTGCGCAAACGAACAGGGAATATTGAAATTA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 49713-49319 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000002.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================================================== ================== 49712 37 100.0 36 ..................................... GCTGGTGACGAAACCAATTTTCTTATGCCCCAAGGC 49639 37 100.0 38 ..................................... CATCACCGTGAGCGAGAAGCGAGTTCATACAGCAGAAT 49564 37 100.0 36 ..................................... ACCTTAATCGAGACCAGGAACCTTCGTCCATCTTCC 49491 37 97.3 99 ...............T..................... GATTTGCGGCTCCATAATATCCATCCCGGCAATTCTCAGTCACAATAAAGAGGATTGGAACGATTGCTTCCCAAAAGGATTTTTTAGCTTCATCCCACA 49355 37 83.8 0 ..........G......C..TC..T..A......... | ========== ====== ====== ====== ===================================== =================================================================================================== ================== 5 37 96.2 52 GTCACAATAAAAACACCTCAATAAAGAGGATTGAAAC # Left flank : GGGGAGACGGGATTGGAAAAACCAAGGTGGGCAAGGGAACCAAGGTCATGATGGTAGTCGATGGAAACGGGGTGCCGATCGGTCTGTATCTGGACAGCGCCCAACATCATGAAATCCGGTTGGCGGAAGCCACCCTGAAAACGGTTCGGGTCCCGCAAAGGCGGGGGCGTCCCCGAACACGGCCCAAGGAATTGGTGGCTGACAAAGCTTATGACAGCCGTTCTTTTCGAATTTGGTTGCGCCGACGGGGGATCAAGCCCACCATTGCCACCATTCATCGAAAAAGCCGCAAACCCCGTCGTGGCCGACCCATCCGTGTGGGAGAGGGATACCGCCGGCGTTGGATCATTGAACGCTGCTTCGGGTGGATGACCAATTACCGTCGGTTGGTAGTTCGATATGACCGATATTTGCATATTTATAGAGCTTTTTGCCTGATTGCATTCATTATTTGGTGTGTGAACCGAATTTTGAAATAGCTTCTAAGCTTGTGACTGGTG # Right flank : TTTTGGAAGTTTGATCGTTACGGTTGAGTTCCCAAAAGGTCACAATAAGAATTCCATTCGCTCATCGGCTCAGGGAAAGCGCCCCAATAAATAGATTGAAAACGCCCCGATTTCGCTCCGCAACCTACCCTTTATTACATTATCAAAACCTCAATCACGCCCACTTCGTTAAAAAATTTTCTGCTCAGACTGACGCCAAAAGCAGCGCCGGTTTAAAAAGGGCGGGATCCATCCCGCCCTTTGATTTGGCATGTTTTAGGCTATTCTCGGCGTCCCCACAGGAACTGACATCAAAAAAACGTGAAGCATAATGCTTCGCCCACGTTCAATCATTTGTTGAACGCGGCGGTTCGTCCTTGTGGCTATCCGCTTTTTGTGTGGCGGCCAACTACCATCGGTTTTTTTCGCAAACAGACTTTAGTACAATAGATCGTTCTGATGGGCGGGGGAAAGGCGGCGTCGGCAGGCGATGTGATTCGGCGGATGGGGATAAGACCAGT # Questionable array : NO Score: 4.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:-1.69, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATAAAAACACCTCAATAAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.20,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 52078-51014 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000002.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================== ================== 52077 30 100.0 38 .............................. ATAGCCCAGGGCCAACTCGGCGACCTTACCCTTTTGCC 52009 30 90.0 62 ...........................NNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 51917 30 100.0 37 .............................. ACTTGAAGCGGCAGGAGGTTGAGACTCCGACGGAAAA 51850 30 100.0 37 .............................. CTACCCCGATGACCAACCACCACTCTGTGATGTCGAT 51783 30 100.0 38 .............................. ACGGGTTGGTGACGCTCGGAATCGCAGGGTTTTTCATC 51715 30 100.0 37 .............................. TCCAATTTTTCTCACCGTTGCCTGCCCGCGTTCAACC 51648 30 100.0 36 .............................. GTTTTCCCACCGGAAAGGCGAATCGGCATATTCTTG 51582 30 100.0 36 .............................. GCGGATTCCTCACGGCAGGTGAGGAATGTCAATTGA 51516 30 100.0 36 .............................. GTTTTCCCACCGGAAAGGCGAATCGGCATATTCTTG 51450 30 100.0 36 .............................. GCGGATTCCTCACGGCAGGTGAGGAATGTCAATTGA 51384 30 100.0 37 .............................. TACAGTGCGATAAACAGAGGGATGGTCCACACAAAAA 51317 30 100.0 42 .............................. TCAAAAGGGCCTTTTCCGCTTGACTCTCCGCTTTTATCCAAA 51245 30 96.7 39 .................G............ TAAATTCGCTGCTCATGGTTCCCGACCACTACTCCGTCG 51176 30 96.7 37 .................G............ AAGGGAAGCATCGACCCCGCAAGTTCCGAATACATCG 51109 30 100.0 36 .............................. GATATCGGATTCGCCGGGATGTTCTTTCCAGCTCAT 51043 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ============================================================== ================== 16 30 98.8 39 GTTTGTAGGTTACCTATAAGGGATTGAAAC # Left flank : TGGTTCAGGCACGGCTCAGGGAAGATCCGGAATGGACGGGGGCCATGTCAATGACCTGGGACGGAATCCGCGTGCGCACCGTCGTCGAGGGGCGGACCTCCGACGGCATCCGCCTGCGCTCCGTCGGCCGCACTCCCGGTGTGAAACAAACCATCCGGGTGGCGCTGGATCCGGAAACGTTGGCAGTGAAGCGTTGGGAGAGATAGGAGGCGGACAACGTCACAACGCGGATCGGCGTGCCAAAGTCGCTCAAGGAAGATTGACACACGGTCTCCGTCGGGCCGACAAAATTGTGGTGCAGTGACTGCGAGAAATAAGTGAAAGTGTCATCGACCTCCGGTCATGCAAAAACCCCTGGAGGTCGACGACACTTTCATTTTCTTCCAATCCTCCGAAAGCCAAGCGAAAGTAGAGAAACGGCCATTTTCCCAATTGACGAAATTATTTCCGAAGGTTATAGTGTAAATACGCAGATGATGGATCTGGCGGTCTTTTTTAGG # Right flank : AGCGACCAACCAAGGTTGGCCTCGGTCGTGACCATTGGTTTTGAAACACGGCAGAATTATGGGCGCTCCTGGATGGTGCCTGCTGTGTTTGTACCTGTGAGGAATGGATTTTCCGAACACCGGGAGCTTCGGCAAAAACCCCGGGGGTGTTCGGAAACGCGCAAACCCGCGTCACACAAGGGAAAACGCCACTTTGGTCCTTCTTAAACAAACGAGGAATTTCCTAAATAATGGAAAATTTGATGAGGTGTTCGGAAAATGGAGTAGAAAGCCAAGTGTATCAATGCCTTCGGCGTCCGCTGTCACAATAAAAACACCTCAATAAAGAGGATTGAAACGCGGCGCCACGACCAGCACCTTCCCCACCTCGAAACGTCACAATAAAAACACCTCAATAAAGAGGATTGAAACTTCACCGTATTTGTTAATTACAAGCTATTTCAAAAACATGATCTGCCAATGTAAAATGGAAGTATGAGTACGAGACATGAGCTGACAGA # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGTTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 167393-167724 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000003.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 167393 37 100.0 38 ..................................... ACCTGGTCCCGGGAGCCGATCCCGGTGGCCCGATCACA 167468 37 100.0 36 ..................................... ACTGAAACCATAATTTTATAATCCCTCACATTGGTG 167541 37 100.0 37 ..................................... GGATGATGGCGATCAGTGGATCGAAAGGGGAAAAAAG 167615 36 97.3 37 ...................-................. GATCGTTTTGAACATTAACTCCCAAAATCCTTTAACT 167688 37 91.9 0 ...................A.......A...C..... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.8 37 GTCACAATAAGAACACCTCGGTAAAGAGGATTGAAAC # Left flank : AGGAAGGGGAAGTTCTTTTTGAGTTCAGTCGGATCTTGATAACGCTTCCGGGCCGGGCGCCATTTCCGAACAATATGGTGTGCGATGTGTGGGCCGCGGGATGAATGGAATGATTGCATCCAAGTTGTGCGTTGTCTGCTTCTGATAATGCGGGGCGACGATACTTTTTCAATTGACGGAATTGTTCCCGGGGGTTATATTGTAAATACACGGCCCATTGGTTTGTCTCTTTTCGCGAATTGCAGGCTGCCTGGAAAAATGTATTGGCTTGTGGCTATATTTCAGGGGTTTGCCTATGAAAGGTGCATTTTGCGAACACCGGGAGCTTCGGCAAAAACCCCGGAGGTGTTCGCAAACGCGGAAACCCGCATCAAATAAGGGGAAACGGCGTTTTGCCGCTTCCGAAGCAAACGTCGGATTTCCTAAAATATGGTTAAATGGAGGAGATGTTCGCAAAACGGCGTAGAAGTCCAAGCCCATCAAGGAATTCAGCGCCCGCC # Right flank : CTCATGCCCGTCTTGTTCAGAATTCCTCTACGGCTCGTCGCTCAGTAAAGAGGTTTGAAACGGGCTCACCAGATACGCGAACCGTTCCCCTTTTGTCACATCAGGATTGAAACGTTCCATGAAAACTGTGGCCAACAACAAAATGGGTCGCAATAGGAACACCTCCATGAAGACGGTATTTTCATCCCCACATGTTCAACTCGCACAAAAAGATGGCTGGGCATGATGTCCAGCCTTCATCACGCCGGGATGATCCCGGCCTTTCGTTATTTCAAGGTTTGATGAGCGGATAAACATCAAAATACAGCGTAGCTGCCACGATTTATATCAGACGCCGATGTACGAGCCGGTGGAGGCCTTTGGGCTGAAGGGGGATGGAAAAAGTGGAAGATCGGTTTTCCATTCTTCGATTTCCCGTGTAAGAGTGGTTTTCCGTATGATATCAATTATGGGATTTTTTACCGGAAGGACAATCCTTGGTCTTCGCCGTTCTTGCCTTC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATAAGAACACCTCGGTAAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 72484-71937 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000001.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 72483 37 100.0 36 ..................................... TTTTAGTCAAACCCTTATTCCCTTTCATTTATATGT 72410 37 100.0 36 ..................................... GCCCCTCCTTCCACGATCTTATTATACCACATAAAA 72337 37 100.0 34 ..................................... ATTTTTACGCGATTGCTCACGAGGTTCCCCCTTC 72266 37 100.0 37 ..................................... GATGCTGATGAAGGAACTCCGAACCTATAACTCCGTC 72192 37 100.0 35 ..................................... GGTTCTGGGAAGGCGGGACGAGGGTCCATCAGTTC 72120 37 100.0 38 ..................................... CCTCGTCGCCGTCACGCAACGGCGTGGTGAGCTTCGCC 72045 37 100.0 35 ..................................... GGTTCTGGGAAGGCGGGACGAGGGTCCATCAGTTC 71973 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 36 GTCACAAAAAGAACACCTCAGTAAAGAGGATTGAAAC # Left flank : GCTTTTTTTCTTTGCAATTTTTTGGGAAAGTAGACATCGAAGTCCTTACGAAACAAAAGTGCAAGATCAATTGTTTTCCTAGGCAACTATCTGGTGGATGGCTGTTTGGGTTGGATGCCCTCAAACTGTCGTCGATTTCTAATGGGGCAATCGATCTGAATAATTGATGTGAAGGGGGAAAAGATGATTTTTAATTGACGAAATTGTAGTCAAGGATTATAGTAAAAGGTGCCCCTGTCGTCGCTTTTTTAGGTTGTGGGTTTCTCTGAAAGGGATTGTAATTTGATCCATCTGTCAATGGAGATGATTTTGCGAACACCGGGAGCTTCGGCGCAACCCCGGGGGTTGTTCGCAAACGCGCAAACCCGCATCAAATAAGGAAAATCAGCGTTTTTCGATTTTTGAATCAGGTGTCGGATTACCTAAAAAATGATTAAATGAAGAAGGTGTTCGCAAAACGGCGAACAGATCCAGGCATATCAAGGGATTTAGCGCCCGCT # Right flank : TGGTGAAAGGCTAAAATCCCTTCGCTGATCAGCACCAAGTCAAGCACACCTTAATAAAAAACATTGAATCCGCCTTATATAACATGGGGTTAAATCAGTCAGGGGTGACGCTGACGTCACCCCTCTTGTTATGTTATGTTGCTGTTACTGACATGGATAGGTGGACTGGATGGGTTTCTTACCTTAAACACCATCTGGCAAACCGTTCCAGAATGCAGAGTCCGTTTTTTCCGGCGAATCACCCTCCGATGCCGCAGCATCCCTGATCTTGGCGGATGGTGGGGATTATCTCAGATGAAGCGCCCGCTTTGGAAGGGAGAAATAGACAATGACTCTTTTTGAAGAATGTATCGAGGCGTTAAAGAGAGAAGGAGAGGTAATGGTTTTATCTGAGGAGGAATCAAGGGAAGTAAAAAGGGAATTTAAAGAAAACGTTCCGTTGGATCGGTTTGTTGGCAGAGTGGATTTCAGTCAGGTATCGCGGAAGAAAGAGATTGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAAAAAGAACACCTCAGTAAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.20,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 84354-84010 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000001.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 84353 36 100.0 39 .................................... CTGGCAATGGCTGTTGAAAACGCGATCTTGAACGGTACG 84278 36 100.0 38 .................................... CCCTTGGTCGTATCAATCGGGGAGGTGATGAAGTCCCG 84204 36 100.0 41 .................................... CGCCGTGCTTCCGTCCACTCCCTCTGGCCCGCCATTGAGGG 84127 36 100.0 45 .................................... TTGCCTTGCCAGCGGGTCGTCGCCTGATGTTACACCACCCTTAGC 84046 36 80.6 0 ..T...............A..G.G..T.A...C... | G [84029] ========== ====== ====== ====== ==================================== ============================================= ================== 5 36 96.1 41 GTCACAAAAAGAACACCTCAATAAAGAGGATTGAAA # Left flank : AAGTCATTAAAATACTCCATTGAAGAGGACATTAGAATTGAACAGTAAGTCATCTCGTATTTAACAACGAGTGGTACTGTAAGAACAAAGGGGGCGATAAATTGTAAAAAGCAAGGCCTTAGACAGGTGTTAATGACAATTGGTCGTAGTTGCTCAGACGTTTTTCAATTGGCGAAATGATCTTCAAGGATTATAGTAAAAATGTAAACGCGTGATTCAGGATTTAATATTAACTATAAGGGATGAAACAGGCCTTAGTTCCAAATTGTTTTTCAGCTTTATTTGTAGGTTCCTCAAGGGGAATTGATTTTGCGAACACCGGGAGCTTCGGCGCAACCCCGGGGGATGTTCGCAAATTCGAAAACCCGCGTCAAATAAGGAAAAACAGCGATTTTCGATTTTAGGTGCAGGCGCCGGATCACCTAAAAAATGGATAAATGAAGGAGGTGTTCGCAAAATGGTGCAGAGATCCAGGCATATCAAGGGATTTAGCACCCGCC # Right flank : GGATTTCAAGCTCCGGGACATGGTGGTGTCAAAGGACGCCTCAATTTAGGCCGTCCCAGAAGTAAACGGCATTTCTTTTCGAGTACGCCTCACGGGAGGCGCAAACAATTTTTCAGCCCTTTTCCGTATGTAAAGATCCGTCTCGGATGGAGTGCAGAAAGGGGTTTATTTTTTATGATGTCTGATATATTTTAAAATTGAAAGCAAACCCTCCTCACCGATGGAAAGGGGCTGGAAGCATGTCGAACAGAAAGCTTTTTAAGGGCGGCTGTGTGCTCACGCTCGACAAGTCCCTGGGGGATTTTAAAAAAGCGGATGTGTTGGTGGAAAAAAGTAAAATCGTCGAGGTGAAACCCTCCATCGAAGGTGTGGAGGACTGTGAAGTGATCGATGCCTCCAACATGATTGTGATGCCCGGTTTTGTGGATACGCACCGGCATACTTGGGAATCGGTGGTGCGGAATGTCGGTGCGGATTGGTCGTTGACCAAATATTTGAAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAAAAAGAACACCTCAATAAAGAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.20,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 98685-98359 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000001.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================== ================== 98684 37 100.0 35 ..................................... GTACGTCCGGAAATTGAACTCACTCGCCTTGCTCT 98612 37 100.0 36 ..................................... ATGAACGAAATAAAAGCGCTGGCTATAGCGCTCCAG 98539 37 100.0 106 ..................................... TTGGAAAAAAAGCATCCAACGCGCTTTGAATTTCTGCGTCACAATGGAAACACCTAAAGGGATTGCAACACAGGTTTACGGTATCCAGACAGCGAGCCATTTTACC 98396 37 75.7 0 ........T....AT...T.G.G....A.......GG | T [98379] ========== ====== ====== ====== ===================================== ========================================================================================================== ================== 4 37 93.9 59 GTCACAATGAAAACACCTCAATAAAGAGGATTGAAAC # Left flank : CATGATGGTGAACAGTTTATTCTGCAGATCACTGTCAGGGTATGAATTGATTGCTTATGTATAGGCACAAAGAATTCTGCTCGTGTTATTTCAGCGTATAAGCATGTAAATGCATCTATAGGCCTTGTTCCAAGCGGCGTTGAGAATCTAAGTTTTTTACGGATATGACGGATTAGTGGCAGGGAGCATTTTCAGAAAAAGTCCATCTTGGTACATTCATTTTTTCAATTGACGAAATTGTTTCCGGAAGTTATAGTGAAAATGCAACATTATTGATTTAGGGACTTGTAGTTAATGACAAAATTGATTTTCCGAACACCGGGAGCTTTGGCAAAAACCCCGGAGATGTTCGGAAACGTGCAAACCCGTGTCAGACAAGGGAAAACAGCACTTTGATCATTTTTGAACAAGAATAGCATTTCCTAAAAAATGGTCATTTTAAGGAGGTGTTCGGAAAATCGCTTAGGAAACCAGTTCTACCAAGAAACTCCGCGCCCGCC # Right flank : TGACTAATGTTGCACCATCTTCGTTTGCAAAATGTTACTATATGAGAACACTTTGATCATGTGAAAGCCGGTTACACCCTGTCGATATGAGAACACTTCGGCAAGAGGATGGCTTCGTCGAGGTCGACCGTTGCCGTCAGTAGATTGCTCCAGCGAGGAGATGGCGGATGTCAAAGGTACACCGTGCCCATGTGAGGCATCGTGAGCGTTTGTTGTCGATGTTGGCCGAGATGTTGCTGGATTCCCGACGGCATTGGATCCGGGATGCGGCGGAAAGGTACGGGGTGTCCCAGGAGAAAATACGCAGAGATATCAAATATCTCGAAAAAATGTTTAATCAACGGAATCAAAGGGAGTATATTATCCGGGGACATGGCTATTATCAGGGCAATTTTGCCCGGGCGGTGGCGAATTTGTCGCCGGAGGTGCGGCTGTATCTCTTTCTGGCCCTGAGGCAGGTGCAGCCCCTGTTGAAGGGCGAAGGGGAACGGGCGTATCAG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:-2.89, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATGAAAACACCTCAATAAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.20,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 4 109735-109406 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000001.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 109734 37 100.0 34 ..................................... GGCAATGGCCAACATTCCGCCCTTTAACTGGATG 109663 37 100.0 34 ..................................... GCTGATGGCGAAAAGCGCAAACCCGAATATTCCC 109592 37 100.0 37 ..................................... ATGGGAAGTCCTCGAAGAGAATGGGCTTCCCATAACT 109518 37 100.0 38 ..................................... TGCTCCTGTGGGATTTCATACAGAGCCCAGACGTTGCT 109443 37 89.2 0 ....................G.....T.....A...T | C [109411] ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.8 36 GTCACAATAAGAACACCTCAATAAAGAGGATTGAAAC # Left flank : TTTCCAGTTACTTAGACGAATGCTGCCTGATGTAAGGGCTGATGCACGCAAGCTCACGTACCGTTTTTTCGCTTTGGATGCAAACAGGGGAGTCATCCCTGGTTTTTTTGTTCTTTCTCGTATCCGAAATGTAAAACCAAGTGCATGGGGAGCCGTTTTTTCAATTGACGGAATTGTCCTCGAGAGTTATAGTGTAAATACAGCGCATGGCGTTGTCGTCGGGTTACGGGCCTTCTCTTTAGAATAAAATTGTCTTGCTGTGGTGCCCCTATCATTTTATCCGGGGTTTTGACTATAAAAAAATGGATTTTGCGAACACCGGGAGCTTCGGTAAAAACCCCGGTGTTGTTCGCAAACGCGAAAACCCGCATCATATAAGGAAAAATAGCACTTTGATCATTCTTAAACAAGCGAGAAATCAACTAAATTATGGTTATTCGGAGGAGGTGTTCGCAAAACGGCGTAGAAGTCCAAGCATATCAAGGGATTCAGCGTCCGCT # Right flank : GAAAGAGGGCTGGGTATTACACCCGGCCTTCATCATGTCTGGTGGATTGATCTCGGTTTGTCTTTTTTGCAAACGGAACTGCAAACGAACTTCATATACACGAACATTGTTTTAAAGCCGTTTTAAAGATAAACACCGACTCTCCATGAGGAGACGGGGGAGAGGATTTTGGCGCTGGTCAATGTGTCCGATCAGAGGATTTCGTTGAAGGTGGACGCCTCCGGAACGGATGTGATCGGCAATCGGCATGTCGACGGCCAGGCGGATCTCGCCCCCTACCAGATCATGTGGATCCGGATGGAGGGAAGGGGTTGAGCGGGAGCGGCAGGCATGGGATCCGGACCTGTAGCAAAGAGGGGTTATTTGAAGTCTTGGGAAGGGAAAGTTTCTTGGTGGGAAAGGAAGTTTTCCCTTCCGTTCCGGTGAAATCATTCATCAGAACATTTCAAAAAGGGGAGAAGGGCATTGGGCATCAAAGTCGGGATTATCGGGACGGGTTT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATAAGAACACCTCAATAAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.20,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 1272-936 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000021.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================== ================== 1271 30 100.0 37 .............................. TGTCGTAAAATTCCCATCTATACCCCCCAAGGCGCAT 1204 30 100.0 36 .............................. TTAGACGGCATCTTTCACTTCTTGTTTGTCATCGCT 1138 30 96.7 43 ...........G.................. TCGGGTTTACCGCCCTCCAACATCACGGCCACATCCAAGGTCC 1065 30 96.7 70 .....................A........ CAAGATGAACAAGAGCACGTCCATTTTGCCCTTCTCTCCTCGGGGATAGGTATTTGTACCCCCTCTCCTA 965 30 90.0 0 AG...................A........ | ========== ====== ====== ====== ============================== ====================================================================== ================== 5 30 96.7 47 GTTTGTAGGTTACCTATGAGGGATTGAAAC # Left flank : GATCACCGAGACCATTAGTCGGGACATGCATGCCGGAGAGGGAGAGACCTCGCTTATCATGCATCTGATGCCGAAAGCCGTGAAAGAAGACAAACGATCCGATTGTGATTCACCTGATCGTCCTTTCCTGGAAACCGTAGGAATGAAACCATATACCAAAAGCGGGACAATTGGCTTTCCCACTCGAGCAACCGCAGAAAAGGGAAGATTGCTCCTGCAAGCCCTGACGGATCAAATCGCATCGACCATAGAGGAAATTGGGAAGCAAAAATAAGCCGGGGATTTTCCCGCTTGTTTAAGTGAGATGAATTGTTCAAGTTAGGTGTCGTCGACCTCCGATAATGCAAAAACCCCTGGAGGTCGACGACGCTTTCATTTTCTTCCAATCCCTTAAAAGCCAAGTGGAAGAAGGGGAATAGCCATTTTCCCAATTGACGAAATTATTCCCAAAGGTTATAGTGTAAATATGTAAATGATGAATTTGGCGGGCTTTTTTCAGG # Right flank : TTAAAACATATAAGGCCGGGATGATCCCGGCCTTTTTGCAAACAAAACTGCAAACGAAATTGCAAACAAAATTGCAAACGAACCTCAGATAATGAGAGAGAATTGCTTTGTACAGAAGATGGTTCATCCTTGAGAAATGGCGTTATTTCAAGGGTTTTCGATGATCAGGCATACGTTAAAATACGGCCCAAACACCATTACATTTAATTTGTATACAGGACAGTTGTTCACTCATGGGGCTGCAGTTATTATTCCTCGCAAAGAAGAATATTTTAAAGCTCTCTGGGCATTTGCAAGTAGTTCGGAGTTTAATCGTGAAGTTCGGAAGATCGACAAAAAAGTGAGTGTCGCTATTAAATCAATCGAATCCGCCCTTTTCGATTTCGATTATTGGCAAAGAATCGCGGCAGAGATGGATGATCCTAGGCACATTTTATGTCAAGATCTCACTCAATGGTCATTTCACGGCCATCCAGCGAAAGCCGAGGCCCATACCGTAC # Questionable array : NO Score: 8.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.72, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3023-2455 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000021.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 3022 30 96.7 38 .................G............ GAGGCTGGCCGTCTTCCCGCCCCGCCTGGCCATACCCG 2954 30 96.7 41 .................G............ GTCATTGGACGCTAAAATCAATGTTCTCGACATTTAGGAGC 2883 30 100.0 37 .............................. CTACAGTCTGTCTGCAATAACAAACGAGGCCGCTTCC 2816 30 100.0 37 .............................. CTCGTCAAGGGTCTGCGTCGCTCGCTCGGCGCTTCGC 2749 30 100.0 39 .............................. ACCCTCCACCAGCGATTATCCGGGGCTTGAGAATTTGGG 2680 30 100.0 36 .............................. ACTTCAGGATTCCCGCAACAATCGCACTTCGACCAA 2614 30 100.0 36 .............................. TGTGGTTACAGCTGCTTCCTCTGTTGGATCATCCAC 2548 30 96.7 35 .................G............ GTAGATTTTCTCCTCCAGCCGTTTAATCTGCTCGT 2483 29 86.7 0 .................G......-...TT | ========== ====== ====== ====== ============================== ========================================= ================== 9 30 97.4 38 GTTTGTAGGTTACCTATAAGGGATTGAAAC # Left flank : CGTCGGTTCAAATCCGGCCGCCCCGACCAAGAATGACGGGGGTTTTCAGCCCCCGTCATTTTATTTCCCGGCCCGACTTCTAACGAATTTCTAACCTTTAGTCGGTTAAAGCGTCTTGATCCAGAATCTGATCGAACATTTTTGCGGCTTCGCGTTGTATGCTCGGAATTACATGAGAGTAAATGTCCATTGTAACGCTGATGTTTGCATGTCCAACCACAATTTAGTAAAAGGTGAAATCAAGGGGATCAAGCTATACAGGGCAAAAGGGGATTTACTGTAAAGGGGAAAATGAACGGTTCTCAATCAACTCAACTTAAGATGTCGTCGACCTCCGATGATGCAAAAACCCCTGGAGGTCGACGACACTTTCATTTTCTTCCAAATCTCCAAAAGCCAAGTGAAAGAAGGGAAACAGCCGTTTTCCCAATTGACGAAATTATTCCCAAAGGTTATAGTGTAAATATGTAAATGATGGATTTGGCGGGCTTTTTCAGGGG # Right flank : TTGCGAACACCGGGAGCTTCGGCCAAAACCCCGGAGGTGTTCGCAAAATGGCGTAGAAGTCCAATTATACCAAGAAATTCAGCATCTGCTGTCACAATAAGAACACCTCAGTATAGAGGATTGAAACTCCCATCCAAAGGGGAGAGTCCCCGATCCTTTGTCGTCACAATAAGAACGCCTCAGTAAAAATCCCAAAAAAAAGAAAAGATGGGATAACACTCAGCCTGTCACCATACAGGAGTGTGAATAATGGATTCCTTTTCGTCGTGGAACGAACTGACAGATGTAAACTTGGCCTTTCTCCCGATCGGAGCCATCGAGCAACACGGTTACCATCTTCCCATAAACACGGATGGAATCATCGCCGAGGCATTGGCAAAACAGCTCTCCAAGCGGTTTGAATCCTCTTTCTGTGTTCCGTTGTTGCCGTATTCCGCTTCCTTTGAGCACGCGGATTTTCCCGGTTGTATATCCCTTAGGGTTCATACATTGACAGCGGT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGTTACCTATAAGGGATTGAAAC # Alternate repeat : GTTTGTAGGTTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13726-13489 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000031.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 13725 30 100.0 40 .............................. AGGTCATTACCGAAAAACAGGGACTGGTCTCATACTTGCA 13655 30 100.0 40 .............................. TACTGCGGATTGTAGTAGAGGCGGCGCGCATAGGGAGTAG 13585 30 100.0 37 .............................. AAATTCCGATCTTGTTCGATCACCTGTCTTGCAAATC 13518 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 4 30 100.0 39 GTTTGTAGGTTACCTATGAGGGATTGAAAC # Left flank : AGGTTACCTATGAGGGATTGAAACTACCCCGTCACCTGGTCCACCAAATCGCTTGCCCGTTCGAGTTTGTAGGTTACCTATGAGGGATTGAAACATGGCCCTTACCACGAACACCTTCCAGCCGACGAAGAACGTTTGTAGGTTACCTATGAGGGATTGAAACACCAACAGGGAAAGGCCCTCCACTCCCAAAGCGGTCTTTGTTTGTAGGTTACCTATGAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTAGGTTACCTATGAGGGATTGAAACATCATTTTTCGCTGGGTCCCATTCGTTGGCAATGGCGTTTGTAGGTTACCTATGAGGGATTGAAACTAGGTGGGCTGAGCAAACGCTTCAGCGGCTCGTTTGGTTTGTAGGTTACCTATAAGGGATTGAAACAGATAGTCCGGGTTGTGGATTTTGAACATGGGAATCGTTTGTAGGTTACCTATGAGAGG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 14300-14063 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000031.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 14299 30 100.0 38 .............................. GAGGTTTCAGACCTTGCTATTCCATTTTACAACATGCT 14231 30 100.0 40 .............................. TACCCCGTCACCTGGTCCACCAAATCGCTTGCCCGTTCGA 14161 30 100.0 39 .............................. ATGGCCCTTACCACGAACACCTTCCAGCCGACGAAGAAC 14092 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 4 30 100.0 39 GTTTGTAGGTTACCTATGAGGGATTGAAAC # Left flank : GCTCGCTTTATTATCCGATGAAAGACATGTATCACTTTTCGGGGCTCTTGAATATTTCCATGAGAATTGGGAAATACCCATTCCACATCTTTTTTCCCGATCAGCAACATTTCTTTATCTACTTTCCTTTTGTGTTACTTTAACACTTCCGTTGTAGCTGAAGATATTTTGACCGATCTCCTGCTCCAATGATGTTTGGGCTGTTCCTTAACCTCCAGACCGTTGCATCGCTGAGTGTGGGGAAAGTCTAAGAAAAACCATATACAACGCGTCACTCCATGAATTTGAGTATGAACTCGGGAATAACCGCGGCCCTTTTGAGGTGTCGTCGACCTCCGGTAATGCAAAAACCCCTGGAGGTCGACGACACTATCATTTTCTTCCAATTCTCCAAAAGCCAAGTGAAAGAAGGAGAACCGCCATTTTCTCAATTGACGTAATTGTTCCCAAAGGTTATAGTTTAAGTATGTAGATGATGAATCTGACGGGCTTTTTCAGGG # Right flank : ACCAACAGGGAAAGGCCCTCCACTCCCAAAGCGGTCTTTGTTTGTAGGTTACCTATGAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGTAGGTTACCTATGAGGGATTGAAACAGGTCATTACCGAAAAACAGGGACTGGTCTCATACTTGCAGTTTGTAGGTTACCTATGAGGGATTGAAACTACTGCGGATTGTAGTAGAGGCGGCGCGCATAGGGAGTAGGTTTGTAGGTTACCTATGAGGGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16031-15244 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000041.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 16030 37 100.0 37 ..................................... GGTTTGCCTTCAGGCTTTCGCACAGGGCTTGCCAGTC 15956 37 100.0 40 ..................................... TTTCCATTCGGCGAAGCGTCGAAGCGCGCATATAGCTCCA 15879 37 100.0 37 ..................................... CTTATCGACCACGCCCGGCTTAAACTTAGAGGAGGCA 15805 37 100.0 40 ..................................... TTTCCATTCGGCGAAGCGTCGAAGCGCGCATATAGCTCCA 15728 37 100.0 37 ..................................... CTTATCGACCACGCCCGGCTTAAACTTAGAGGAGGCA 15654 37 100.0 37 ..................................... ACCTTTGTCACCCTAGGCCTTATTTTTCCCATAATAT 15580 37 100.0 39 ..................................... TGTTTACGAAACCAATGGGCTGCCGTTTGACCAGGCCAA 15504 37 97.3 37 .........................A........... AAAGACCATTCTTCGGAATTCCATGCATTCCTTTTCA 15430 37 100.0 39 ..................................... TGTTTACGAAACCAATGGGCTGCCGTTTGACCAGGCCAA 15354 37 97.3 37 .........................A........... AAAGACCATTCTTCGGAATTCCATGCATTCCTTTTCA 15280 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 99.5 38 GTCACAATAAGAACACCTCAGTAAAGAGGATTGAAAC # Left flank : ACCACGTCAACTTGAGAAGGTTTGTAGGTTACCTATGAGGGATTGAAACACGAACATCTTCCTGATCCAACACCTCCAAAGCTCCTGTTTGTAGGTTACCTATGAGGGATTGAAACAGTCTACATTTTATGCTTGGAATTGGGAACCCGAGGAGGTTTGTAGGTTACCTATGAGGGATTGAAACCCGGATGCTTCCCGGGCCCTCCCCGGGGATGCTTTGGTTTGTTGGTTACCTATGAGGGATTGAAATAACGGGCAATGGGGAGATTGGGAACCGGTTGCCTATGACGGTTTGTAGGGGGATTCCGTTTGCGAACACCGGGAGCTTCGGCAAAAACCCCGGAGGTGTTCGCAAACGCGGAAACCCGCATCAAATCAAGGAAAATGGTCTTTTGCAACATTCGATGCAGAGGCCGGATTCCCCAGAAATTGGTTAAATGAAGGAGGTGTTCGCAAAAGAGCGTAGAAGTTCAGACACGTCAAGGGATCCAGCGCCCGCT # Right flank : GAGCACCCATCCGATGACCGGAAGGCGACTCAGGCTGCTGAGACCAATAACCGATGCGCCCGGTCCGCCCCTCAAAGGCGGGGTTTGACGAGGATTTTCGGGTACAACCTGCCGCAAACAGGCACAAAATCCCATCTGCATCATAGGATATAAAGGCGCGGGCCCAGAAGGGAACATGTGGATACAAGGATTTGGCGGATGGGAGGTTGGTGTCCATGTGCGGAATCGCAGGCTGGATCGACTGGGGGAGACCTGTGAGCCGGGAGCGCTCCGTCCTGAAGAAAATGAACCAAGCCATGGCCTGTCGGGGACCGGATGACGAGGGCGTTTGGCTGTCCAAACACGCGGCGCTGGTCCACCGGCGGCTGGTGGTGATCGACCCCGAGGGAGGAGCGCAGCCGATGGTTCGCCGCTACGGCGGCCGGACCTATGTGATCACCTACAACGGTGAATTGTACAACATGCCCGAATTGCGCAGGGAATTGGAGACGCGGGGACAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATAAGAACACCTCAGTAAAGAGGATTGAAAC # Alternate repeat : GTCACAATAAGAACACCTCAGTAAAAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.20,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 16711-16281 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOOK01000041.1 Planifilum fulgidum strain DSM 44945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 16710 30 100.0 37 .............................. TACGTTTATCGTAACGTGCTAAAATGGAGTCAGAACG 16643 30 100.0 37 .............................. ACCGTTACCCCTTCGTATTTTTCCTTCAAATACTTCT 16576 30 100.0 35 .............................. ACAACGAGACTGAGGGACCACGTCAACTTGAGAAG 16511 30 100.0 37 .............................. ACGAACATCTTCCTGATCCAACACCTCCAAAGCTCCT 16444 30 100.0 38 .............................. AGTCTACATTTTATGCTTGGAATTGGGAACCCGAGGAG 16376 30 100.0 36 .............................. CCGGATGCTTCCCGGGCCCTCCCCGGGGATGCTTTG 16310 30 93.3 0 ......T......................T | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 99.0 37 GTTTGTAGGTTACCTATGAGGGATTGAAAC # Left flank : AGTGCTCACCCTGTTGAAGCAAAAGTGTTGCATGGGTGTGTCGTAGATCGAAGTGACCAAACGCTTGAGAAAAGTGATCAAGATTGTATGGCGATCCGTCGGTTTTACAAAAAAACAAGGTTGTAATCCTGGTAAGCAGGTCCCAAAGCAATTTTTTGATTCGTTGGAGCATACTAATGACGGATTGGGACGCCGCACGAATGGGTGTGGGGCAAAGTTTAAGGAAAAAGAACAAGATATTTTCGAATACATATACAACGCGTCACTTCATGAATTTGAGTATGAACTTGAATTAGGCGGGGAATAACCCCGGCCTTTTTGAGGTGTCGTCGACCCCCGATCATGCAAAAACCCCTGGGGGTCGACGACACTTCCATTTTCTTACAATTCCTTAAAAGTCAAGCGAACGAAGGGAAACAGCCATTTTCTCAATTGACGAAATTATTTCCAAAGGATATAGTGTACATATGTAGATGATGAATCTGACAGGCTTTTTCAGG # Right flank : AACGGGCAATGGGGAGATTGGGAACCGGTTGCCTATGACGGTTTGTAGGGGGATTCCGTTTGCGAACACCGGGAGCTTCGGCAAAAACCCCGGAGGTGTTCGCAAACGCGGAAACCCGCATCAAATCAAGGAAAATGGTCTTTTGCAACATTCGATGCAGAGGCCGGATTCCCCAGAAATTGGTTAAATGAAGGAGGTGTTCGCAAAAGAGCGTAGAAGTTCAGACACGTCAAGGGATCCAGCGCCCGCTGTCACAATAAGAACACCTCAGTAAAGAGGATTGAAACGGTTTGCCTTCAGGCTTTCGCACAGGGCTTGCCAGTCGTCACAATAAGAACACCTCAGTAAAGAGGATTGAAACTTTCCATTCGGCGAAGCGTCGAAGCGCGCATATAGCTCCAGTCACAATAAGAACACCTCAGTAAAGAGGATTGAAACCTTATCGACCACGCCCGGCTTAAACTTAGAGGAGGCAGTCACAATAAGAACACCTCAGTAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //