Array 1 486835-485674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHPJ010000001.1 Streptococcus pyogenes strain Bra046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 486834 36 100.0 30 .................................... CCAAACGTCATCAAAAGCTTTTTGAACTGT 486768 36 100.0 30 .................................... TATTTTAGCAGATGTGTATGTCAAATTGAT 486702 36 100.0 30 .................................... CAACGTTTTATATTTTTCATCATAGATGAA 486636 36 100.0 30 .................................... AACTTCTTTTTATTTCTGTCAAATGCTACC 486570 36 100.0 30 .................................... TACTGCAAAGGCCGAGCTTCACTTTGCAAT 486504 36 100.0 30 .................................... TGGTTGATTTTAGTTAGTAATCTGTAAACT 486438 36 100.0 30 .................................... ATATTTTTGACGCAGTTGCCGATGTAATTT 486372 36 100.0 30 .................................... GGATCTTCTGACAAGCATTATTAGACACCG 486306 36 100.0 30 .................................... AACTTAATTTACTTAATTATATCACGAAAG 486240 36 100.0 30 .................................... TCCTCAACAGTTAATTGACCAGTCCTGATG 486174 36 100.0 30 .................................... TGAGGCCTTATGTGGATGGTGATAAAGTTA 486108 36 100.0 30 .................................... AGCAGATGTCTTGCTTGAAATTATTGGTGT 486042 36 100.0 30 .................................... AAGACCCAATTCAATAAACATGCTTCCTAA 485976 36 100.0 30 .................................... TTACTCCAATAAATCGATTGACGAATCATT 485910 36 100.0 30 .................................... CTTACGAGCTGAGTTTACTCGTAGTAATCA 485844 36 97.2 30 ......T............................. TATCGTTAAAAAACAGAAAGGCGGTGGAAA 485778 36 97.2 30 ......T............................. GACATATTAACGTCCTTTCTCCTGCTTTCC 485712 36 97.2 0 ................................T... | CT,T [485677,485683] ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACACAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTCATTTTTGTCAATAGTGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : ATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGGGGGGTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTAAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACAAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCTAGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //