Array 1 47068-55045 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSXD01000001.1 Rathayibacter toxicus strain FH147 FH147_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47068 29 100.0 32 ............................. TCTGCGCACTGGGCCATTACTGGGCAGCGTCT 47129 29 100.0 32 ............................. TAACCAACCGACCACCATACATAGATTGGACC 47190 29 100.0 32 ............................. ATCTGGTTGGGTCGCCTGGTTTTGGGCGCGTT 47251 29 96.6 32 ............................T GAGGTTCGGGGAGAGTCCTCTAGAGCAGCTAG 47312 29 96.6 32 ............................G GGAAAGCACATTGTTAGGCTCGTTCTCAGCTC 47373 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 47434 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 47495 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 47556 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 47617 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 47678 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 47739 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 47800 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 47861 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 47923 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 47984 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 48045 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 48106 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 48167 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 48228 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 48290 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 48351 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 48412 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 48473 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 48534 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 48596 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 48657 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 48718 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 48779 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 48840 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 48901 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 48963 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 49024 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 49086 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 49147 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 49208 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 49269 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 49330 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 49391 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 49452 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 49513 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 49574 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 49636 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 49697 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 49759 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 49821 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 49882 29 96.6 32 ............................G CTATCTGCTCACAATGGCAGACCAGCACGGCG 49943 29 96.6 32 ............................G TCCGCCGGGAGGCGCAGGCGGCTGGTAGCGAA 50004 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 50065 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 50126 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 50188 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 50249 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 50310 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 50371 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 50432 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 50493 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 50554 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 50615 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 50676 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 50737 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 50798 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 50859 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 50920 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 50982 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 51043 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 51104 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 51165 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 51226 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 51287 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 51348 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 51409 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 51470 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 51531 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 51592 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 51653 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 51715 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 51777 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 51838 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 51900 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 51961 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 52022 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 52083 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 52144 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 52205 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 52266 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 52327 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 52388 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 52449 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 52510 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 52571 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 52632 29 96.6 32 ............................T ACAAAAGGAATACCCAAGCCTTCGATTCTTTA 52693 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 52754 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 52815 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 52876 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 52937 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 52998 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 53059 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 53120 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 53181 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 53243 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 53304 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 53365 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 53427 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 53488 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 53549 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 53610 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 53671 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 53733 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 53794 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 53856 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 53917 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 53979 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 54040 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 54101 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 54162 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 54223 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 54284 29 100.0 32 ............................. CCAATACTATTAATGCGCAATCCAAGAAAACG 54345 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 54406 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 54467 29 96.6 32 ............................G AAACCATCGACCTAATCCTAGAGGCAGGCGAG 54528 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 54589 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 54650 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 54712 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 54773 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 54834 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 54895 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 54956 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 55017 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= ================================= ================== 131 29 97.7 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : TCAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //