Array 1 48-1662 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTW01000026.1 Streptomyces rubiginosohelvolus strain JCM 4415 sequence26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48 29 96.6 32 ...T......................... TGCACGGCCATCCGCGCCCCGGCCCGGTAGGC 109 29 100.0 32 ............................. TTGCTCGTCAACCTGACACCGGAACTCCGCAG 170 29 100.0 32 ............................. TCCAGCTGCCCGGCCTGGACCTGACCGTCACA 231 29 100.0 32 ............................. TGGGTTGCCAGGACCAACGGCATCATGGCTGG 292 29 96.6 32 .............A............... GGGACTGCGCCACCGTCGGGGCCGGAGAGTTC 353 29 96.6 32 .............A............... TCCAGTTCGATGTAGTCGATGTCCCCGAACTC 414 29 93.1 32 .........C...A............... GCGGCCCGGGCACCTGCCACGAGACCGGCTGC 475 29 100.0 32 ............................. CTGATGTAGCGCTGCTTTGAGACGGTCAGTGA 536 29 100.0 32 ............................. GCGTCCTGCGCATGGAGCCTAAGGGCCCGCCG 597 29 100.0 32 ............................. TAGGCGGCGTAGCGCGGGTTGTCGGTGACCAC 658 29 93.1 32 ........T.......T............ TTCCGCACGGTGCGGCACTGGCCGCCGAATCC 719 29 100.0 32 ............................. CCGACCCGGTCTCGGAGATCACCCGCATGATG 780 29 100.0 32 ............................. CCGACCCGGTCTCGGAGATCACCCGCATGATG 841 29 100.0 32 ............................. TCCGACCGGCGGTTCGTCGCACGGGACTGCGT 902 29 100.0 32 ............................. CCGATGGGGAGACCGGCGGCGAAGGTTGCCGC 963 29 100.0 32 ............................. CCGATGGGGAGACCGGCGGCGAAGGTTGCCGC 1024 29 100.0 32 ............................. ATCGCACAGGCCAACGCGTTCGCGAAGGAGAC 1085 29 100.0 32 ............................. CAGCCGATGCTCGTCGCCCCCTACCCGCTGCC 1146 29 100.0 32 ............................. TGCTGAGCCATCGCCGGATCGGCGAGGTTGAG 1207 29 100.0 32 ............................. CCGTACATGGTGGAGCGCCCACAGAGGCGGTC 1268 29 100.0 32 ............................. CCCGCACGGCGTTGATCTGCGCCCACTCGGCG 1329 29 100.0 32 ............................. GCCGGCAGACCGTGCTGGCCGTCCAGCCCGGC 1390 29 100.0 32 ............................. ATCGTCGTGCTCACGACGCGCTCACCTCCGCG 1451 29 100.0 32 ............................. ATGATGGTGAGCGTCTTGGGCGCCGTGCTGGA 1512 29 100.0 32 ............................. TACCACCCGCAGAAGAGCCAGTCGAGGTACCG 1573 29 96.6 32 ..........................T.. GCCACTGGAGCAACGGGGTCCTCGTCGGCGCC 1634 29 79.3 0 ..............T....GAA...T..C | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.2 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : AGCGGAGGTGAGCCGCCGTTGGCCCCGTTGCCGATGGCCTGGCAGTCG # Right flank : CCGCTGGTACAGCCACGTCGCGCGGATGCCCGCCTGCTCCCCACACGCGGGAATGGACCGTAGACCGGCGAGGACTTCGCCGTCGGAAGGCCCGCTCCCCGCATGTGGGGATAGTCCCGCGGCCTCCGCCGGCCTGGGCAACGGCACGTGTGCTCCCCACGTCGGCGGGCATAGCCCCTCCACGACGTCGGCCCCGCTCCCCTGCCGTGGGCCAGGAATCTGGCGCGCAGCGCTCCATACACCGATGGGTTGCTGAACTCCATAGTCGGGTAGTGACACCGTGGTGCTAGGGGATTCGGGGGCAGCTCATGGTTAGCGGGCGCGTGCGACCCAGCGGCGGCACAGCATGGCAGACCGATTTCCAGCGCCGGACAACAGGCCGCCCAAGCATGAGCGCGATGGATATAGCGAGGATCCGTCGTTCGCTGAACGGGACGCTCACCGAACTGCAGCTGGCCATCGAACGTTTCGATGTGCCCAAAGCCGCGGATCTCTTCGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 292-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTW01000029.1 Streptomyces rubiginosohelvolus strain JCM 4415 sequence29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================== ================== 291 29 75.9 62 .....G.........ATTT.T....A... CTTGGCGTGAGTTGCGGAAAGCAGCGGAATGACGTCGAGGATCGTAAAGCGAGGAAACGTTC C [289] 199 29 89.7 32 .C..........A..........A..... ACCGAGGCGGCGCTGTTTGCGGCGTCGCTGCT A [197] 137 29 96.6 31 ...G......................... GGGCCGGGCTGGCACCCGACCCTTCATCGTT 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================== ================== 4 29 90.6 42 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : AACTACCGCTGCGTGGCCAGCCCCGTCCGGAAGCCAGGTGCCACCTCTCGGCAAGCCTATAAGCTCCCGCCGGTCGTGGCCTTGAGCGGCAATGCCGCTATTGAATGGTGGGAACGCCAGTCCAACGCTGGCGGGCTGGAGCCATTGCACACCACCGCCCACCCGCTCGCCACTGTACGAGGCCAGCAGGGTTCCAAGGACCCTGCTGCAAAACAGAGAATTCAGCATGCCCGCACGCAATTCTATGGGACAGCGCGAGTACTCGACACCGAACTGCTTCGCGAAAAGATCACTACCGGCATCGGGCGCGGCAAGGCATACGGATGCGGACTTCTCAGCATTGCTCCCACTCGATGAATTCAACAGAGTGCCGACCGAAGCCGTGCCAGGCTCCTGATCGGAGTGCTCCTACACGGCAGCGACTTCTGCGTTTCTTCCATGACTGCCCTTGCGCGGCAGTGACAATAACTCGCCCACCAGAGTAGTGTACGGAAGGTGGC # Right flank : GCCGTTGGCCCCGTTGCCGATGGCCTGGCAGTCGTGTTCTCCGCGCGAG # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.90,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8733-12038 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTW01000029.1 Streptomyces rubiginosohelvolus strain JCM 4415 sequence29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================== ================== 8733 28 79.3 136 AA.G.A...........-.....T..... GCGCCTGGGTTGTGGGGCCTGCCTTCTCCGTCGCGTAGTCGGCTTTTGGGTGAGCGGCGGCGAGCCGGTGTCGCGCGACACCCCGCGTGGCGCGTTGCTTCAACATCCGTTCCTTGAAACGTGAAGAGCGTGATCG A [8754] 8898 29 72.4 32 T...G.CGT.......A..GC........ GTCACGATCGGGGCCGACGGCAGCCTGATCGT 8959 29 72.4 32 ...T...GT...G..A...G..C..C... GTGTTTCGGCCTGCGACCTAATCCTGTCGGCA C [8964] 9021 29 82.8 25 .....T......T........A.AG.... GAGGTACTACGGGTCGGGTCGGGGG T [9025] Deletion [9075] 9076 29 96.6 32 .............A............... GCGCAGACACCGGCCTTGCCCGCACCAAACTT 9137 29 96.6 32 ..A.......................... GACGGATGGTGGATCGTCACGAGCACCACCAC 9198 29 93.1 32 ............T.............A.. TCGTACGCGTGGAGCCAGCACTGGCGGCACTC 9259 29 89.7 32 ............TC..............A GAGTCTGGCGGCACCCCCACCCTGGACTACGA 9320 29 100.0 32 ............................. GACGTCGGGCGCGGTCTGATCCTGGGCATGAC 9381 29 96.6 32 ........T.................... GTGTTCCGGAACGGCCCGTACGTCATGGGTTT 9442 29 100.0 32 ............................. CTGGGGCGTCCGTGGAAGACGGACAAGCTGCG 9503 29 96.6 32 .......T..................... CCGTGCTTCCGGATCCCGTGCCCCGACCCGGT 9564 29 100.0 32 ............................. GACCTCCTGCCCACCGTCCAGGGGTTCGTGAC 9625 29 96.6 32 ..........T.................. TACAGGACGGGGACGTTGCCATGCACCGCCAG 9686 29 96.6 32 .........................T... GCGCTCACGGACGCCCGCGCCGAGGCCGGGAA 9747 29 93.1 32 ..........T..............T... AACGACGTCATGGACGGCATCCGCACCGTCTC 9808 29 96.6 32 .........................T... ACGGTGGAGGAGGACCTGCGCAACGCGGTCTT 9869 29 96.6 32 .........................C... CCCTTCGTCCACGGCGATGCGGCGCGTCCGAG 9930 29 96.6 31 .........................T... AACATTCACCCCTACGTCGAACAGGTCGGGA 9990 29 100.0 32 ............................. AAGGCGTCCACTCGGGCCACTGACCTGGTTCA 10051 29 89.7 33 ..C.......................T.A GCGCCGCCGTCGCTTCCCCGCCGTCTACACCCG 10113 29 93.1 32 ............T.G.............. GAGGGCGTGACCTCCTGGGCGTAGACCCTCTG 10174 29 93.1 32 .....T.................C..... CCGCATCACGCCACCTGCCCGTCCCCGCCACC 10235 29 100.0 32 ............................. CAGATGACGGCGAAGAAGCTCGCCGTCCTCAT 10296 29 100.0 41 ............................. GCTGCGAGCATCGCGGCAGCCCAGGGCCAGGTCGCCGCGGC 10366 29 93.1 32 .C..........................A GCAGCTCGGCAACGCCGCGCACCTCCTGGGCA 10427 29 96.6 32 ............A................ AAGGTCCGCAAGGACGTCGATCGGTTGCTGCC 10488 29 96.6 34 ..............G.............. CGCGAGTACGAAGACGACGAGTTCGCGAAGGCTT 10551 28 89.7 32 ..-.......................G.A TCCGCCGTCACCGCGTCCGCATACATTCGCCC 10611 29 96.6 32 ..........T.................. CACGACTCCGGATACCTCCTCGGCGCGTCCAA 10672 29 89.7 28 .......T...A.A............... GGTGAGCGCTCCGGGATTTGGTCCTCGC 10729 29 89.7 32 .......AAA................... GTCTACTGCTCCGATGCCTGCCGCAAGCGGGC 10790 29 96.6 32 ....................A........ CACCAGACCTGCGGGTCCTTCACGGCCGCCAT 10851 29 96.6 32 ..A.......................... ATGATGGTCTCCGTGCTCGCCGCCGTGCTGGA 10912 29 93.1 32 ...........A.............A... TGGCTGGCCGAGCTCGAGGCGGAGAACGTGCA 10973 29 96.6 32 ..A.......................... ACGCCGAGGGCGGTCGGCATGTGCTCGATGAC 11034 29 100.0 32 ............................. TACCGGGCGTACGACACGTCCCGGGCGGTCGC 11095 29 100.0 32 ............................. ATCTCCACGAACATGTTCTTCGTGGTGTCGGT 11156 29 100.0 32 ............................. AAGGGGATGGGCGAGGGGTCAGGGCTTTTCGC 11217 29 100.0 32 ............................. ACCGAGGACACGTTCTGGGTCAACCTGATCGG 11278 29 100.0 32 ............................. GTCTGCGGGGTGCACGACCTGCTCGGCGAAGA 11339 29 100.0 32 ............................. TTGTACTGAGAGTTTGAGGTGACGTGTTCGGC 11400 29 100.0 32 ............................. GGGCACGGCCGGCACCAGCTCGCCGGACCCCA 11461 29 100.0 32 ............................. ACTGCGGAGGCGGTGCAGGCCGCGTACCGGGA 11522 29 96.6 32 ..A.......................... GCGCTCGGCGTGCCGTGGCGTCAGCTGATGGA 11583 29 100.0 32 ............................. TTCCTCGGCATCACCATCAACCCCGACCCCAC 11644 29 100.0 32 ............................. CAGAGCACCCGGTTCCTGCGGATGGAGGACTG 11705 29 100.0 32 ............................. CGCGCGGGGAGCGGGAGGAGGACCTCCTCCTC 11766 29 100.0 32 ............................. CTGACGGCGCGCTGGGCGACCAGGCCGTAGGC 11827 29 100.0 32 ............................. GGCCGTGACCACATGGTGTCCACGGAGAACTG 11888 29 100.0 32 ............................. TTGTACGGGGTCAGCATCGACCCGATGGCGAA 11949 29 86.2 32 .A..............AAA.......... ACGTCATGAAGTACCTTCGCCCCTTCACCACC 12010 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================================================================================== ================== 53 29 95.2 34 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GGTGCAGGTAGTGCTGCCGATGAACGCAGCAGAAGAAGCTGTCTCGCAATCCTTCGTCGCTTGCACCATCCCTGTGAAGACCGGCGCGGGGGAATTCGGACAACCGCAGGTACACCAAGTTCGTCGTCCCGTAGAGTACTTACTGCTGCACGCCTCTCTGGGAGGTGCGCGGAATTCCATTGGCTCTTCAGGCGACAGCACATCGAGATGAACGCACGACCCTCTCGAGGGATGTGGCGCAACCTCGACCGTGTCTGCGCTCTGGAGAAGCAGTGTCTCGGTTCCTGCGGAAGTTCGTTCTGCGACGCGAGGTCCTCCTCGAGGTATCGCGCGTGGTGGTCAGCACGGCACTCCGTGTCCTGATCAACGAACTCGTCAGCTGGCTCTTCTGAGCCAACGGCGACGGATCCCAGAGATCCGTCGCCTCTCAACACGGCGAGGATGTCCCGCTGGCTTCCGAGGTATCCCCACTACGGCTATACCTTCCCGCGCGTCCAGCA # Right flank : GCGACTCGACCAAGGGGCGGCGATCCCGGAGTATGTCGCCCAGAGTGGTCCGCCCGGGCGGACCATGGGCATGATCCACAAGGGCACGTGTAGGCCGCTGGACGACAGCGTCCACCCCGTCGCCGCGGACGACGCCCGGCGACTCCTGCACGCGCAGACATCCCTGGCCTGCCAGGTCTGCCGGCCCGACACCGCCCTCGGCCTCGACCCGTAAGCCGGAGACGACGAGGGCCCCCACCGTGCGGGTGGGGGCCGTGGTGCGCCCGGGACTGGCCGAGCACGCTCTAGCGTTTCACCGTTACGCGTTACCGCGGTTCTCGTTGCCCTTTGCGTGAATGTCTTCTTGAGCCCCGGCCATCTGGCGTTCCTCACGAAAGCCGAGCAGGGCCTGCGTGGGCTGGTCGAGGCAGATCTGGGGTCCCTGGCGGACCATGGCGGCACTTCGTGCGACGCTTTGGTGATGGACGCCGCGCGTCGCGCCGAGGCGTCGCTGGGAGCGT # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [45-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //