Array 1 19300-18208 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYT01000062.1 Neisseria meningitidis strain MRSN431121 MRSN431121_contig00062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19299 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 19233 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 19167 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 19101 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 19035 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 18969 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 18903 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 18837 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 18771 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 18705 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 18639 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 18573 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 18507 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 18441 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 18375 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 18309 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 18243 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //