Array 1 430660-432151 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEC01000002.1 Salmonella enterica strain BCW_2641 NODE_2_length_614714_cov_4.26119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 430660 29 100.0 32 ............................. GTTAATGTGGTTCGTTTGGTCTGGCGGTGGAA 430721 29 100.0 32 ............................. TCCTCTTTGCTGGCGTTGCTACCGTAGCGACC 430782 29 100.0 32 ............................. ATCGCCTTGTTACCGGCGCTATCAATTGCCGC 430843 29 100.0 32 ............................. TCCGGGGTCAGCATTATCCAGTTATTGCTCGC 430904 29 100.0 32 ............................. CGGATCGCATTTGATATATAAAATTACTGGCA 430965 29 96.6 32 ............................A GAATCGCGCGCGCTGGCAGGGGATATGATGGT 431026 29 100.0 32 ............................. CAGGTCACTAAAATTTGCAGGGTTATCCACAG 431087 29 100.0 32 ............................. CTGCGCGAGGGTCACGCATTTTCGGAATCCCT 431148 29 100.0 32 ............................. CACTGGATTTGAATTATTTATTTCACTTTCAA 431209 29 100.0 32 ............................. GACTCGGTCTGTTTTTTGATTTTGGCAATCAG 431270 29 100.0 32 ............................. CGCATTATGATAAAGTTCCCGCCCGTAACTCA 431331 29 100.0 32 ............................. CCGTATCGGGTATTTAATTTTTACGTGAGAGA 431392 29 100.0 32 ............................. ACCAATAGCAAACTAACAGACGAGCAGGTGAG 431453 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 431514 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 431575 29 100.0 32 ............................. CGCGCCGTGCTGGTAGGAGGCACGGAGATAGA 431636 29 100.0 32 ............................. CTCTGGCTGAGGTTAGAGCGGCTGGTCGCCGC 431697 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 431758 29 100.0 32 ............................. TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 431819 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 431880 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 431941 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 432002 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 432063 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 432124 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 449360-452012 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEC01000002.1 Salmonella enterica strain BCW_2641 NODE_2_length_614714_cov_4.26119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 449360 29 100.0 32 ............................. GCTCCGGTGGTGGGGCGAATAGCCTGGACTGG 449421 29 100.0 32 ............................. GTTACGTTATTATCTCTCACATAGACCCGGCA 449482 29 100.0 32 ............................. GGGTTAGCGATCCTGGAGCTTGCAGAGCTGGC 449543 29 100.0 32 ............................. TCAGCGCGCGGCCCGACATAATGCCGGTCATA 449604 29 100.0 32 ............................. GCGTCATTCGGTGCTGATATGCAGATGATGAA 449665 29 100.0 32 ............................. CCACTTGTGTGGCGACCTCCGTTAAACAACAC 449726 29 100.0 32 ............................. GGAAACGGCGCGTTAATTTTATTTAACGGTAA 449787 29 100.0 32 ............................. CTGATAAGGCCTGCCGTCTAATTCCTTATGTA 449848 29 100.0 32 ............................. CTCGTCTCCGTCCTGCATCAGATACACCCGCA 449909 29 100.0 32 ............................. CGATCCGAGCGTGGGGAAAACCCTTGCATTGC 449970 29 100.0 32 ............................. ACGCTGGGTACGAGATATCACCCACGCTCCGC 450031 29 100.0 32 ............................. TTTACAGGACCGCTATTATTAACCTGTGTCGG 450092 29 100.0 32 ............................. CCGTGCTCATTACAGCACCCAACGTTACGCGA 450153 29 100.0 32 ............................. GAATGGGTGAAATGCGGGATCGGCGTGTCGAC 450214 29 100.0 32 ............................. TTTATTGATAGTAACTGATTGTTATTAACTCC 450275 29 100.0 32 ............................. AATGATTGCGTCAAATACGACAACCTGCCAAA 450336 29 96.6 32 ............................T AGCGGTGATTCACTAACGTTTACGCTTACTGA 450397 29 100.0 32 ............................. GAGTTACGCCAGGTTGAATTATTCCGCTGGGC 450458 29 100.0 32 ............................. GACATACAATGGTTAAGTATGAGTTTTCAGCA 450519 29 100.0 32 ............................. CCGGCGTGTGTTGTTGAAGATCAGTCTAAAGA 450580 29 100.0 32 ............................. ATCCATATCAGCGCACCGAAATAACGGACGGT 450641 29 96.6 32 ......T...................... AGGCTGCCTTAATACGCGAATAACCGTCTAAC 450702 29 100.0 32 ............................. ACGACTGAATTAAAACCATACGGCGGCTCATA 450763 29 100.0 32 ............................. ATTGACCCGCAGCGGTGCCCCGTCGATTTGAA 450824 29 100.0 32 ............................. TTGGGGTTACCTGCTCTCCAGTCACGGCAGGT 450885 29 96.6 32 ............................A CGTTGTTAACGGCAGCCTTATCTGCTTTACCA 450946 29 100.0 32 ............................. CAATGTGCAATCCTATACAAGAGATATTCCAA 451007 29 100.0 32 ............................. TCGGTGAGCATTGAAGCGCTTTACTTAAGGCA 451068 29 100.0 32 ............................. GCAACTCATCACGATTACTTACAGGTTGGCTA 451129 29 100.0 32 ............................. TTGAGCCATCGGGATCACAACGTACCGGAGGA 451190 29 100.0 32 ............................. AAAAGCGGGAGCGAGCGCGGCAGCAGAAAGCG 451251 29 100.0 32 ............................. TGGCGAAACAAATCACCAGAAGAATTATTATG 451312 29 100.0 32 ............................. GAATTTCCAATAATCAGCGCCGTGTTGCTGAA 451373 29 100.0 32 ............................. ACTGACCCCCCAGTGCTTTAACCTTCTCATGG 451434 29 100.0 32 ............................. TGTGGGGAGAGTGCGAGCGCGGGGAGGCAGCT 451495 29 100.0 32 ............................. CGCAACGGTCAGTTAGCGCACCCTTCATCCTT 451556 29 100.0 32 ............................. ACCTTTATTAGAGATATCCAGGCATTTAAAAC 451617 29 100.0 32 ............................. TTAAATCTCCATCAGGAGCCTGGACTATTTCA 451678 29 100.0 32 ............................. GCTTACGAAGTTCATTACCTGTACTTGGCGCA 451739 29 100.0 32 ............................. GTCGCAGGCCTCGGTGGTGGGGTGGATATTGA 451800 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 451861 29 100.0 32 ............................. TTTTCAATAAATTATCTTGCATCAATAGACAG 451922 29 100.0 32 ............................. CATAAAACTGGTCGAGTTCGTGGTATTGATAT 451983 29 100.0 0 ............................. | A [452010] ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //