Array 1 39-921 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYRS01000015.1 Salmonella enterica strain BCW_4392 NODE_15_length_124778_cov_4.99642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 100 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 161 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 222 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 283 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 344 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 406 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 467 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 528 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 589 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 650 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 711 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 772 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 833 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 894 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17033-18509 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYRS01000015.1 Salmonella enterica strain BCW_4392 NODE_15_length_124778_cov_4.99642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17033 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 17094 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 17156 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 17217 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 17278 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17339 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17400 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17461 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17522 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17583 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 17644 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17705 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17766 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17828 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 17931 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 17992 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 18053 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 18114 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 18175 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 18236 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 18297 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18358 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18419 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18480 29 96.6 0 A............................ | A [18506] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44869-45812 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYRS01000036.1 Salmonella enterica strain BCW_4392 NODE_36_length_45835_cov_4.98206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44869 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 44930 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 44991 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 45052 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 45113 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 45174 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 45235 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 45296 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 45357 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45418 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45479 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45540 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45601 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45662 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45723 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45784 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : AATTATTTCTGTGGCTGGGGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //