Array 1 46884-48968 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRZV01000003.1 Bifidobacterium pseudolongum strain AF13-3LB AF13-3LB.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46884 36 100.0 28 .................................... AGAGTGAGCACCACTTGCACCATCTGCC 46948 36 100.0 28 .................................... TGCCGGTCCGCTTCCTCACGGGCGGCGA 47012 36 100.0 30 .................................... TCAACCCCATCAAACCCACCACCCAGAAAG 47078 36 100.0 28 .................................... CCGACGACCGTGTCCTCGCCGTAGCGCA 47142 36 100.0 28 .................................... TTCCTCAACATCAACCGCCATCGCACAC 47206 36 100.0 28 .................................... CGGTGTATGAGGGCAATGCGGCGGGTAT 47270 36 100.0 28 .................................... TGATCGGGTTACGGCAAGCCATGATGGA 47334 36 100.0 28 .................................... GTCGGCGCAGTGGCAGGAGAGCATCAAA 47398 36 100.0 28 .................................... TGATCGGGTTACGGCAAGCCATGATGGA 47462 36 100.0 28 .................................... GTAGATGATGTGCACGTCCTCGGGTGGC 47526 36 100.0 28 .................................... TGATGCGGCCGCTGGCGCTGACGGTCAC 47590 36 97.2 28 ...............T.................... ACGTCGACGAATGGGAGAGCACCATCGT 47654 36 100.0 28 .................................... AACAGAACAGCGGAGACGACAGAGCGGA 47718 36 100.0 28 .................................... TGAGCCGCAGCCGGATATGACGCCCATA 47782 36 100.0 28 .................................... CCCAGCGCTTTCGCCAGTGAACAACAGA 47846 36 100.0 28 .................................... CGAACGGCTTCGGTGATTCCATTGTGAG 47910 36 100.0 28 .................................... CGTGTCCGTGTCGGCCCACACCGGTGTC 47974 36 100.0 28 .................................... TTCGACCGCGCCGCCGAGCTGTTCGAGA 48038 36 100.0 28 .................................... AACCCGCCGCGCTCGAACCGCTCGTAGT 48102 36 100.0 28 .................................... ACCACCGGTGCGTCATGTGCGGGCACAT 48166 36 100.0 28 .................................... GTATTCCATGCTCAACGCGCGCAGCACC 48230 36 100.0 28 .................................... CGACCCGCAGTTCGACCACGGTGCGCTG 48294 36 97.2 28 ..G................................. CGACGAGAATGCGGGCGACGATTCATGC 48358 36 100.0 28 .................................... AGGTCTTGGTGAGTGTGGCGCGCACGAT 48422 36 100.0 28 .................................... CCGAGTACAGGCGCGCGTCATATGGGTC 48486 36 100.0 28 .................................... GCATCCAACATGTCGCCGCTCATGGCCG 48550 36 100.0 28 .................................... CGCAACTGGGCGGGTTCAGGGCGCGCAC 48614 36 100.0 27 .................................... AAGGTTCGCCGCTTCACGCAGGACGGC 48677 36 100.0 28 .................................... ATGACTTTGTCGGGAAGGTATCCGCCTT 48741 36 100.0 28 .................................... ATCATGCTGCATACCGAACATCGAATGA 48805 36 100.0 28 .................................... TGAGCATCGTCACATTGAGCGCCCCCGA 48869 36 100.0 28 .................................... TGCAGCAGCTCAACACGCCAGCGATCTC 48933 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.8 28 GCTGGAAATTAGCTTCCTACCTTCTTGATAGACTTG # Left flank : TATGAGCCGATCATCTGGCCACAGGACACGCAGCCTGCCCATGACACCGGCAGCAGCAAGCGACCACAGTCCAGCCATGCGACCGCCTGCGGCTGCACGGCTTCAGTCTGCGCTTATATTGCGCGAGGCCAGCGATGCAATAGACCGGCTACAGACCCGTCTTGAGGCATTTGACCTAGGTAATAGGACTCACTCTCGTTAAACGGGAACCAGATATCGCGCTTGATCTACCTCCTGATGGTGGATATGCTACACCCGAGCATCGCACCTATTGCCCCTATGCCGGTGCTGTGTCCGATATCAATCTGGATGGCCAATTGGTCTTCTAAGCAGATGCGAATATATTATTCTCATAGGTCAAAATCCCCCCGGACTGGTTTTCTGGACAATTACCAATCTATTGGGCGTTGTACTTTCATCGAGACAACGGGATAGGGGAGTCTGCAAATTGGCTCGCTCTTTGATAAACTAACCTTGACACATGAGATAAGTAGACCCAT # Right flank : GATAGCCTGCCAAGAAGGTAGGTTTCCCAATGATTTTTACCAAAAAGATGTTCAAAAAACAGTGCAGACATCTGGTGCCTCCACATCGTTTTGAGGAACCTCGTTGACAAAACGCAGAGATTGCGCCCATTGATGGTCGCTAATATGCACCACCCGTACTTTCCCGCCGGACGGTAAATGCTGCTTAATCATTTTCACCGTGGATCGGTTTCCCGATTGGGTTGGTGAATATCTCGCATACACGGAGAACTGCACCATCATATAACCCATATCAAGCAGCATATTCCTGAACGCTGTTGCCTCGCGTCGTTCATTCTTGGTCTGCACAGGCAAATCAAACATCACCAAGCACCACATTCCCCCACTCTCCTCATCCTTTTTCATCCTGTCCTCCAAAAATCGGAGTTGTCAATACTCTCTCCTTTGACTCGCAATACAAGCCAAATTGCTGCGCAAACTCGTCAATGGAGCTGGGAATTGTCAGTCCTCCATTGAACTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGAAATTAGCTTCCTACCTTCTTGATAGACTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //