Array 1 125118-123198 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTYD01000076.1 Escherichia coli strain 2763-16 2763-16_n76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125117 29 100.0 32 ............................. TTCTCGACCGTTGCCCGTCACCGAAAAAAATC 125056 29 100.0 32 ............................. CTGCTGCTGATCCCGTTTGCGGCGTGATATAC 124995 29 100.0 32 ............................. ATGAAGGACGCTGGCAAAACAACGACAACCCC 124934 29 96.6 32 ..........................A.. TCTCGCGGTTTACGGGCGAACCCGCGTTACTA 124873 29 100.0 32 ............................. GTGGGCGACCGCCGCCAGTTGGAGCTGGCGAC 124812 29 100.0 32 ............................. GATCGTGGGGTGGATGTGTTGCCACTGAGTCG 124751 29 100.0 32 ............................. TCTTGGTTAACACAATACTGAGGGCTTGATGT 124690 29 100.0 32 ............................. CGGGATAATTCAGCTTTCACATCACGGCAAGA 124629 29 100.0 32 ............................. GCATCTCTTCCACTTAAATCTCCTTGTTACGA 124568 29 100.0 32 ............................. GATTTACACATTGACCTAAACCGGATTCTATT 124507 29 100.0 32 ............................. TTGGCTAGATTAACGTGAATAGTATAAACAGC 124446 29 100.0 32 ............................. GGTTATTCAGGATGCCTTTAAGCCCATTCCCA 124385 29 100.0 32 ............................. GATATAGAGCGGGTACTCGAGCGGAGCGGGGA 124324 29 100.0 32 ............................. ATTTAACAAATATCCCGCGATTAATATGCGGA 124263 29 100.0 32 ............................. CCTTTTACTGGCGATTTGTGGAACTTGGCACC 124202 29 100.0 32 ............................. GAACTCCCTGCCACAAATCCCGAAGTGGACGC 124141 29 100.0 32 ............................. CGTGATTGTTGGGATCTCATTCAGCCCGAGAT 124080 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCGCGTCACGGCTTA 124019 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 123958 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 123897 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 123836 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 123775 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 123714 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 123653 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 123592 29 96.6 32 ............C................ TTTACGTGTTATCGCGCACCGGCGACGGTGTG 123531 29 96.6 32 ............C................ GTGATGAGGAAAAGCTAATAGAATGGCGACGC 123470 29 96.6 32 ............C................ GTCCACGGTTCGACGCCTACCGCCGCAGCTAT 123409 29 96.6 32 ............C................ GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 123348 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 123287 29 96.6 32 ............C................ CCGGCGAAGGACTTGCTCGTGTGGTTAAAGCC 123226 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGATGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 151560-150798 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTYD01000076.1 Escherichia coli strain 2763-16 2763-16_n76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 151559 29 96.6 32 ...........T................. GCCTGCTCGTGAGTCCGCGGCGCGAACTGCCG 151498 29 100.0 32 ............................. ACGGCGCGTTCTTGAGTTCTGTATACTGCTCG 151437 29 100.0 32 ............................. GAATGTGGGGCGCTGCTTCATCGTCAAATTAT 151376 29 100.0 32 ............................. ATGGAAACCCGTCGCCTGGTTAAACAGGTTAT 151315 29 100.0 32 ............................. GAACTCCCTGCCACAAATCCCGAAGTGGACGC 151254 29 100.0 32 ............................. CTGGCGGCGTTTCAAATGAGGCTGGAGGCATT 151193 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 151132 29 100.0 33 ............................. ATCACCCCGAGCGTGACGCCGTTCGCCGCGTGC 151070 29 100.0 32 ............................. CTGCGGGCCTGAACGGCGAAAATGTTGGTGAC 151009 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 150948 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 150887 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 150826 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //