Array 1 142807-142112 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIKS01000002.1 Streptococcus suis strain SS1056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 142806 36 100.0 30 .................................... CTACCGCTATCTGTACCTTGGCCACGCTAT 142740 36 100.0 30 .................................... CTGTAAATGTGTAGCTTATCCAACAGCTTT 142674 36 100.0 30 .................................... TCAGACGGCTGTTTGCAATCAGTAACATCA 142608 36 100.0 30 .................................... ATGAACGATTGAATGAAATTGATGTCACAC 142542 36 100.0 30 .................................... AGTGCTTGAGACGAATACGGAGGATGAATA 142476 36 100.0 29 .................................... AGCGAGGTGCTCAGCAAGTAGATAAGGAG 142411 36 100.0 30 .................................... CTGCAATTCGTTCATAACGCCACTGCGAGG 142345 36 100.0 30 .................................... TAACTTTATTTAGTAACGTTTATAACAGTT 142279 36 100.0 30 .................................... TTAACTATGTTTTGAACAAGCCTAACTACT 142213 36 100.0 30 .................................... AGGTGTGTAGAAAATTCTGCTGAAATAACT 142147 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : TTCCATTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACCGGTAAGTGTATTCCACGAACGATTCGATGGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACGCGGGTCTTGGCATGGTGGCGCAAGCGCCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACTACTATTGCAGATGCTACAAACTACGCTAT # Right flank : TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTACTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTATTGTCCCACCCTCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTAGGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 144223-143131 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIKS01000002.1 Streptococcus suis strain SS1056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 144222 36 100.0 30 .................................... GGCCAGCATCAAATCATAATACTCCGCTTT 144156 36 100.0 30 .................................... TTGACCTTGATGGAGAAAGTATCATGAGTA 144090 36 100.0 30 .................................... AACAGACCTATGGGGTAAAACAAACAGATG 144024 36 100.0 30 .................................... TAATTACAGAAACAGGAAGTCCAATGTCAG 143958 36 100.0 30 .................................... CATACGAAGCCATTATAATCAACACGAACA 143892 36 100.0 30 .................................... TGCAGAAAGAACTCAAAACGTACAAGGACA 143826 36 100.0 30 .................................... CTCAGTAATATCGTAAGAGTACAACGACCG 143760 36 100.0 30 .................................... ACAACATAGCAACTCTACCACATGATGTCT 143694 36 100.0 30 .................................... CAATGGGGTATTCACGAAATCCCTTCAAAT 143628 36 100.0 30 .................................... AATCAACTACAGACAGTTTTACTTTCTTAA 143562 36 100.0 30 .................................... AGACAAAAAAGCGACCTTGTTTCATCAACT 143496 36 100.0 30 .................................... AGGTATCTGGATCTAATGGGCTTAAGACAC 143430 36 100.0 30 .................................... CCGTCTGCAGTTCGGACTTAGCAGTGTTTA 143364 36 100.0 30 .................................... GCAGGTCTATCAGATACACTCGTTCCATTT 143298 36 100.0 30 .................................... CGGTAAGTGTATTCCACGAACGATTCGATG 143232 36 100.0 30 .................................... GCGGGTCTTGGCATGGTGGCGCAAGCGCCA 143166 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACTACTATTGCAGATGCTACAAACTACGCTATGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACCTACCGCTATCTGTACCTTGGCCACGCTATGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACCTGTAAATGTGTAGCTTATCCAACAGCTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACTCAGACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //