Array 1 1-334 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMD01000016.1 Salmonella enterica strain 14 contig_112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 62 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 123 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 184 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 245 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 306 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTCACGAGGTCTGACGCGGATGTGATGAGTTAGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-272 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMD01000017.1 Salmonella enterica strain 14 contig_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 62 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 123 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 184 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 245 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1489-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMD01000008.1 Salmonella enterica strain 14 contig_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1488 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 1427 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 1366 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 1305 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 1244 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 1183 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 1122 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 1061 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 1000 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 939 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 878 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 817 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 756 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 695 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 634 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 573 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 512 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 451 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 390 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 329 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 268 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 207 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 146 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 85 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GGCTATCCAGCCGAGAAATGGCAGAACCGATATGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 184197-184530 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMD01000047.1 Salmonella enterica strain 14 contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184197 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 184258 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 184319 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 184380 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 184441 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 184502 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GAGTCAGCCCAATGAGCAACATCGACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //