Array 1 6980-5611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSZX010000076.1 Micromonospora chalcea strain N18 NODE_76_length_27071_cov_14.0556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 6979 30 100.0 31 .............................. TCGCGGCCGTGACCGGCCCGTCCAACGACGT 6918 30 96.7 31 .............................C TGTTCGACCACCTCGGCAACGTGATCGGTTT 6857 30 96.7 31 .............................T GGCACTGCCACAAGGAATGGCGGCGGCGGTG 6796 30 100.0 31 .............................. CCCGGGCGGTGATGGACGAGCTGGGCATCGC 6735 30 100.0 32 .............................. AACTCGACCAACTGCGGCAGGCCGCGCTGAAG 6673 30 100.0 31 .............................. CTTCAAGGTCAAGTACGAGACCGCCGTGTGC 6612 30 96.7 31 .............................A GGGGTGCACGTCGAGAATCACGGACATTTAT 6551 30 100.0 31 .............................. CGTTCCAGCGGGCCCGCAAGCTCACCGCGGA 6490 30 100.0 31 .............................. TCCACTCGTCCATGACCTCGCCGAGACTGCG 6429 30 100.0 31 .............................. CGCTGGTGGATGTGGTCGGCTATCCGGTGGC 6368 30 100.0 31 .............................. ATCGGCCCGGTTACCACGAGTGCTGGACGGC 6307 30 100.0 31 .............................. TGACGGTGCTGGGCTCGTTCTCGTACGACAC 6246 30 100.0 31 .............................. GCACGTTCGACCTGCCGCACTACTCGCGGTG 6185 30 96.7 31 .............................T TCCTCGACCGGTCCGGTGGGCTGAACATGCA 6124 29 93.3 31 ........-....................T CGGTGGGGATCTCGTTCGGGTCGTCAAACTC 6064 30 96.7 31 .............................A TGCGCGGCCGGTACCTGAAAGGGCAGCCGGG 6003 30 93.3 31 ..............A..............C CGTACGACGTCTCCGGGGTGAGCGCGCACCC 5942 30 100.0 31 .............................. GCCACGTCTACCAGCCGACTGCGCCGGCACC 5881 30 93.3 31 ..........T..................A AGTCCGTCCACACCGTGTTCGTGGTCAGGAA 5820 30 83.3 31 .....TA.....A...............AT TCACCCTGACCGGAGAGAACGGGCTCACCAT 5759 30 90.0 31 .......................T..A..T GGGCGGGCCGGGCGACGTTGGCGTTCGCGGC 5698 29 83.3 30 ...............A.....CAC.-.... AGACGGGGCCGCGGGCGTCCACGCTCCCGC 5639 29 83.3 0 .C..............C.......-...AT | ========== ====== ====== ====== ============================== ================================ ================== 23 30 95.8 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Left flank : ATGGCCCCAGAAGATCGGGTAGACACAACTGGCCGGCCGCATCGTGTCGGAGCGAACCATCGCCTGACGTGTCCTCGTACAAGCCACAAGCGAGCAGCGCCCCGAAGGCAGCCTCATTCTTCTTCTGGAAGCCAGGCGAGACCTTACCGACGTCGTGCAGTCCCGCCCAGAACATCACCAACGACTTGGCGTGAGAGTCGCTGGTGCCAAGGCCTTCCGCAATGACGCGGCGCTGATTCGGGGCCAGGTAGCGGTCCCACAGTTCCCCGGCGACGGCAGCGGTGTCGATCAAGTGCCAGAGCAACGGGTACGGCTTCAGAAGCTGGCTAGACTTGCCCCAGATCCCGGCGTCGACCGCTTCATGGTCGAAACCCAAACCGATCACCTCCGCTCCACATCCCGCTCGTGAGGGCAGCCGCATGCAACCACGGCCGTACGACACTTCAGCCCGGCCAGCGCAAAACCGCACAGTGGGCCGATAAACCCGCAGGTCGCGAAGT # Right flank : CTATATAGCCTGCCCGTCCTTGACGCTGAGCGGCGGGCCTGGTGCCTAGTTGGCTGGCACCAGACCCGCCGCCCATATAGTTCAGGGTCGGTCGTTCAAGCCACCCGCGCGAACCGACCCGACGAACCGGGTCCAGGCCGTCGGGTTGAAGCTCAACGCCGGTCCCTGCCGATCCTTGGTGTCCCGCACGCCGATCGTATCGGCGAAACCGGCCACCTCGACGCAATCGCCATTACTACCGGACCGGGACGACTTGCGCCACACTCCGTCACGCTCCATCGAGCATCTCCTTCGCTATCGCCCCGATCAACTCGCGGGACTCATCCGTACCGAGCGCCCGCTCCGCGAGCGAGCGCCACGCATCTTCGTAGATCTGGATTTCGTGGGGCTTGTCAAGGTAAACGGCACCACAGGGTCCGTCCATATAGATCGTGGTCGGCTCCGGTGCCCGCACCTCCGTTGGGAAATCAAGCATCGTGAAGGTACCGGTGGACGCCCAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15944-17314 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSZX010000076.1 Micromonospora chalcea strain N18 NODE_76_length_27071_cov_14.0556, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15944 30 100.0 31 .............................. CGGACTGGTCGCTCACCACCGGGGGCGGGCT 16005 30 100.0 31 .............................. TGAACGCGATGAAGATCGCCGACATGGTGAC 16066 30 96.7 31 ............................A. CGGAGGCTGCCGGTGCGGACACGCCTGAGCT 16127 30 100.0 31 .............................. CACTCGGCGGTGTGATCCTGATCGGCCTGGT 16188 30 96.7 31 .............................T ACGAGGGTGCGATGTTGCAGGAGCCGAAGCG 16249 30 96.7 31 .............................A AGTACCCCGACACCGTGACCGTTCTCCTGTA 16310 30 96.7 31 .............................C CTCCGGCGCCGAAACCGGCCCCGGCTCCAAC 16371 30 100.0 31 .............................. GCCCGCCGGTCACCTGGCGGGCCCTTCCCTA 16432 30 96.7 31 .............................T CCACTCACGGCCTCAGCACCGCCCAGTCGTC 16493 30 96.7 31 .............................A AACTCGCCGCGTTCGTCAGCCCCCAGGAAGG 16554 30 96.7 31 .............................T GGGCCGGTCCGCGCGTGTGGCGGCTGGCTCG 16615 30 96.7 31 .............................A TCCCTCCGGTCAGGATCATGCGTTGCGTGCG 16676 30 96.7 31 .............................T GCGCTGAGGCGCAGGGCTGGCGCGCGGCGTT 16737 30 100.0 31 .............................. TGGGCGCGCAGTCCGTGGACGACGAGCCGTG 16798 30 100.0 31 .............................. GATCATGGCGCTCGCGCCGGCGCTCGCCCCG 16859 30 100.0 31 .............................. CGTGCGGGTCGATCTGACGCCGACCGCTGAC 16920 30 96.7 31 .............................C CGTGCTCGGTGCGCAGCCGAACCGCCAGCGT 16981 30 96.7 31 .............................C TGGTCACGGCCCGGGGTGAGCACCTGGTGCC 17042 30 96.7 31 .............................C GGAAGATGGTCCCGGCGACGCTGTTGCAGTC C [17051] 17104 30 93.3 30 ............................CA TGCCGGGCGGCGCGGACGAGTGTACGTGCT 17164 30 96.7 31 .............................C ACCGCGAGATCGGGCGGGGAGTCAGGTCGGG 17225 30 96.7 30 .............................A GTATTGCCACGGTCGGCGTGCTGGTCGCAT 17285 30 80.0 0 .....A...G.C...C....A........C | ========== ====== ====== ====== ============================== =============================== ================== 23 30 96.8 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Left flank : CGCCGACATTCAGCGCCTGCTCGATCCCGACAGCGCACCCAAGCAGCGTCAGCCCGCTGCCGAAGTCACCTCTCTCTGGGATCCGGACATGGGCTCTGTGCCGTCCGGGGTCAACTACGGCTCGGACTCCTGGGACTGACATGGCCTCGATGGTCGTCCTCGCCACCACCGCTGTTCCCGACCACCTCCGGGGTGCGCTCAGTCGTTGGATGATCGAAGTAACCCCCGGCATGTTCGTCGGCACTCTGTCGGCCAAAGTCCGCGATGAACTGTGGAACGCCGCGAGCGCAGTGGTGGGCGACGGTGCTGCCGTTCTCATCCATCCGGACGACACCGAGCAAGGGTTTTCGCTACGGACAGCGGGAGAGCGTCGACGGCGCCCAGTGGACTTCGACGGCCTTACCCTCGTCGCCATGAGTCCAAAGGAAGACCCGCGAGCCGATCAGGAGCCGGTTGAAGAAATCTGGCCGGAGGGCTGGTAAAGCCGCAGGTCGCGAAGT # Right flank : CGAACCTTCGAGTTGCCCACGACAGTGCGTGCGCCTGTCGATGCTAACGGTCACGGCGTGCCAGACCCTGCGAATGCTCCCCGGCTCTCGGGCGGCGCACGGAAGGCCGATAACGATCATGTAACGGGCGCGAACCTTTTCGTGGGTGTCACCGCTCTCTCTCGGCATCGGCCCGCCGGGGCCAGGAGAGGACGTCGGATGAAGCTGGTGTGGAGGCGGGCGGTAGAGGCCCGTGGGCTGCTGCTCGCCGCCGCTGTCGCGGCACTCGTCGCGGTCGCGTTGGTCACCGGGCTCTCCGACTACAACCGCCGGGCGGTGGACGCGGGCGCCCGGGCGGTGCTCGACGCCGCCCCGGCGGAGGAGCGCAGCCTGCTGATCAGCGGCTCCGGTGGGGCGGACGCCGCCGCGTACGCGGAGCGGGACCGGGCGGTACGGGCACAGTTCGCGAACGGGCTGGGCGGGGCGCCGGTCACGGTGGCCGGAATCCGGTCCGGCACCGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31420-25669 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSZX010000008.1 Micromonospora chalcea strain N18 NODE_8_length_63290_cov_13.3286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 31419 37 100.0 36 ..................................... GTCGAGGGTGGGCAGCTCGGCGAGCCCGAACTTGCG 31346 37 100.0 37 ..................................... CGGGTCGTACTCACCCTGGATCGTCGGGGCCTTGCCC 31272 37 100.0 38 ..................................... ACCGTGCTGTCCACCGACATCCCCGCCCTGGTGGCCAC 31197 37 100.0 39 ..................................... CGGTGCGCAGGTGGTAGTAGGCGCGCTCGGTGGCGCGGA 31121 37 100.0 41 ..................................... AATGTAGGCGAACCGCGTCCCGCGCAAGGTCATCTTCTCCG 31043 37 100.0 38 ..................................... TGACCGCCGGCGGGACCGTGTTGCGTTCCGCCGGGCTC 30968 37 100.0 38 ..................................... CCTGTCCCCCCTTGTCGTCACAGATCGGTGAGCCAATG 30893 37 100.0 38 ..................................... TGGACGATCGTGTTGACGACGATGCGCAGCGCCCAGTC 30818 37 100.0 37 ..................................... ACCCCCGCCGAGATCGCCGCCGAGGCTGCCGCCGAGA 30744 37 100.0 37 ..................................... TTGCAGTTGCCGCAGCGGACGACGCCCGCGCGCCGGG 30670 37 100.0 37 ..................................... TTGCAGTTGCCGCAGCGGACGACGCCCGCGCGCCGGG 30596 37 100.0 38 ..................................... GCCGTTGCGGTCGGTATAGACGGCGCTGATCGGCAGCG 30521 37 100.0 37 ..................................... GTGTTGGAGGCGGTGTCGCTGCTCGGTGTCACCCCGC 30447 37 100.0 36 ..................................... GGTAGCGCAGCTCGTACGCGCGGCCGGGCCGCAGCA 30374 37 100.0 38 ..................................... ACCGCCGGCACCCACTACCCCAACGGCTACTTCCCCAG 30299 37 100.0 39 ..................................... CCATCGATGCAAGTTGCGGCAACATCACGATCTCGGCAA 30223 37 100.0 37 ..................................... ACGTTGGACGTGGTGCTGCCGGAAGGCGGCACCACGT 30149 37 100.0 37 ..................................... ACGTTGGACGTGGTGCTGCCGGAAGGCGGCACCACGT 30075 37 100.0 37 ..................................... ACGTTGGACGTGGTGCTGCCGGAAGGCGGCACCACGT 30001 37 100.0 37 ..................................... ACGTTGGACGTGGTGCTGCCGGAAGGCGGCACCACGT 29927 37 100.0 37 ..................................... ACGTTGGACGTGGTGCTGCCGGAAGGCGGCACCACGT 29853 37 100.0 37 ..................................... ACGTTGGACGTGGTGCTGCCGGAAGGCGGCACCACGT 29779 37 100.0 40 ..................................... ACTATGGTCTGAGCGATGGCGAACACCTCTCGCGCCGCCG 29702 37 100.0 38 ..................................... ATCGGCCTCTGGACGCACTGCGACGACGAGGGCCGCTG 29627 37 100.0 36 ..................................... CACACCTCGAAATGAAGATGCGGGCCCGAGCTGCGG 29554 37 100.0 36 ..................................... GTCCCACATGTCGTAGATGGCGCCCTCGGCGGCGAC 29481 37 100.0 36 ..................................... ACCTCGAGCACGAGCGGCCCCGTGCGCCCGCTCGTG 29408 37 100.0 38 ..................................... GACATCCGGGTCGAGCAGCACTCGCGGACGGTGCGGGA 29333 37 100.0 38 ..................................... CTCAGCAACCGGGGCAGCCTGCACGAGGTCGACGAGGA 29258 37 100.0 35 ..................................... ATCCACGAGCAGCACGGCATGCCCACCGACCAGCG 29186 37 100.0 38 ..................................... GTGAACGCGCTCGACGCCGCCGAAACACTCGGCCGGGG 29111 37 100.0 35 ..................................... TCGTTCGAGGTGCGCGCCGGCGGGACGGTCGGGTC 29039 36 97.3 39 ...................-................. AGGTCGATCTCCCGCAACTGTAGCCGCACCCAGGCACGG 28964 37 97.3 36 .....................T............... AACCTGCTCAACGGCAGACCACACCGGTACACGGGG 28891 37 100.0 36 ..................................... GACGGCTGGGCCCGCCGAGCGACGCGAGCATCTCGA 28818 37 100.0 36 ..................................... CATTGCGGCGATCGACTCGGCGGTGAGCGGCTGCCC 28745 37 100.0 38 ..................................... ACTTCGCGCTCCCGTTGGTGGCGGTCCAGTAGGTGGGC 28670 37 100.0 40 ..................................... CTGGGCGTACGCGTTCTCCACCGCCCGCCCGGCCCCGGGC 28593 37 100.0 38 ..................................... ACGAGCGAGCCGGACGCGCCGGAGTTTCGCGCGCACGT 28518 37 100.0 36 ..................................... AACGCCTACACCACCCCGAACCTGGATCAGGCCGAG 28445 37 100.0 39 ..................................... TTCATGGGCGACGATGACGAGCAGGCTGTCATCTGCCGG 28369 37 100.0 40 ..................................... ATCGTGGAGCGGCGGTCGATGGCGGCGGCGACGGCGTACG 28292 37 100.0 37 ..................................... GTCTCGGTGGTGCTTTGGTCGGTCAGGCGTGCCGGTC 28218 37 100.0 37 ..................................... TCGGAGCCGTCGACTGAGGTTGACCAGTGGCGGGATG 28144 37 100.0 35 ..................................... CGCTTCCGGTCCCGGCGTTCCCGCCGGTTGCTCCC 28072 37 100.0 38 ..................................... ATCCAGAAAGCGCAGCGCGACACGGGGGCGTCGATCGT 27997 37 100.0 38 ..................................... GTGTGGTCGGAGTTGTTGTCGACGGTGTGGGTCGGCGT 27922 37 100.0 37 ..................................... ATCGTGGCGGGCGCCGGCGACGCGGACTCTCCGGACG 27848 37 100.0 38 ..................................... TTCGGCACGGTCGGCTCCACCGGCAGCGGAGCCGGCCA 27773 37 100.0 37 ..................................... AGCTCGTACGACGCGCGGCTGTACCCGTAGTCGCTGT 27699 37 100.0 35 ..................................... GCGGGCCTTGATGACGTCGCCGAAGCCCTTGCCGT 27627 37 100.0 38 ..................................... TACATCCGGGCCCGCCGCGCCTGCGAGTCGACGCCGGT 27552 37 100.0 38 ..................................... GCCACCCAGTACGCCACGAAACACGCCGCGTCGACATC 27477 37 100.0 38 ..................................... GTGGCGGTGGTCTGATCGGTCGCCGAGCGGGCCGGGTC 27402 37 100.0 38 ..................................... GCCGCAGTGGGGGCAGGGGACGCCGATGAGGGGTTGGG 27327 37 100.0 37 ..................................... ATCTGCGGCGAGTGGGGCAAGGACAACCACCCCGACG 27253 37 100.0 37 ..................................... CAGGTCCACTCCTCGATCACTTCCGGGGCCTCGCCGC 27179 37 100.0 35 ..................................... CGCTCCCACCCTCACGAGTGGGGCAACACGCGCTC 27107 37 100.0 36 ..................................... CTGTCCGAAGGGGACGGCAGGACTTGGAGCTGTACG 27034 37 100.0 37 ..................................... AGACCCGCCTCGACGAGATCAAGCATGCGTGCCAGGA 26960 37 100.0 37 ..................................... ACCCGCTGGGGTCAGGATCTCCTCGAGGGCCTGGTGC 26886 37 97.3 37 ................A.................... GACTACCTGCGCGCCACCCTCAAGACCGACGACGAAC 26812 37 100.0 38 ..................................... GCCCGCGGTGGACGGCACGCTGCCGGCGAGTCCGGGCG 26737 37 100.0 37 ..................................... GAGTACGGTGCCCCGCCGACGTCGGCGGCCGCCGGTA 26663 37 94.6 38 .........A.....T..................... TCGATCGAGTCGGCCAGCGCGTCCACGTTCACCGCAGA 26588 37 100.0 31 ..................................... GGCACCCTGATGACCTGCGGCGGCGGCGGAT 26520 37 100.0 39 ..................................... CGGTCGTACGGGGCGATCAGGTCGCCCAGCTCCAACAGG 26444 37 100.0 36 ..................................... GAGCAGGTGTACCGGATCGACGACGGGGGCCGGGCG 26371 37 100.0 39 ..................................... CCGGAGGAGCCATGAGCGATTTCGTCGCCAAGGAGCACA 26295 37 100.0 36 ..................................... TTCGCGCAGCTCAACGCCTCCGCCACGGTGACCGAG 26222 37 100.0 37 ..................................... CGGATCGTGGTGGAGGTCAGCGACGTGCTGGACAACG 26148 37 97.3 38 .............................G....... GTGCTCCTCCTGCAGGAGGTCGGAGATGGTGTCGAGCA 26073 37 97.3 39 ...............................T..... ACCACGACGTTCTGCGCCGCCACGCCCTGCAGCGTGGAA 25997 37 97.3 39 ..........G.......................... ACCTCGAGCGCGCACCGGGTGCGAACGGACCGGTCCATC 25921 37 100.0 37 ..................................... AACTCCCGGCCACGCGACACCAACGTGAATGACCCGG 25847 37 100.0 37 ..................................... AACTCCCGGCCACGCGACACCAACGTGAATGACCCGG 25773 37 97.3 31 ..................................G.. GTCGACATGACGACCGGGCGTCGCGCACGGC 25705 37 97.3 0 ......................T.............. | ========== ====== ====== ====== ===================================== ========================================= ================== 78 37 99.7 37 GCTGCGCCCGCCCTCCGCGGCGGGCGAGGATCGCAAC # Left flank : GTCCTGCCGCTTGTGCAGGCGCGACTGCTCGCCCGACACCTGCGCGGAGACACCGAGGCTTACCGTCCCTGGACGGTCAACTGAGATGGACCTGCTCATCACGTACGACGTCGAGACCGCCACGCAAGCGGGCCAGCGGCGTCTCCGAAAGGTCGCAAAAATCTGCGAAGCGTATGGCCACCGCGTACAGAAATCCGTCTTCGAGGTCGTATGCCGCGAGACTGACAAGGTGAAACTTGTCGATGCTCTCGCCCGGGCGATCGACCCGGCTCTCGACAGCGTCCGTATCTACCGGCTACCCGCACAGGCACTCGACGACGTCGAACACCTCGGCCCTGCCCGGCGGGTAGATCCCCGGGCCCCTTAGTGATCTAGGAACCTCCAGTGCGCACGCTCAAGGCAGGGGGTTCCGAAGCAGTGAATGGCTCTAATCGGTACTAATGCCACGCAAGATCGACTCGATGTTGTTGTCCGCTACGTATTTCGGCTGTTCAAGAGCC # Right flank : GGAGCCGACAGTGCCCTTCTGTGATGCCGGGGTGCGGTAGCGGGTTGGCCCTGCAACAGCAGGCGGAGAAGCGCTCGCTGTTCTCCATTAAGCGCCTCTCCGCCAGCGGGACGGCGGTGAGATCTCACAACCGTCTCACGGACGACCCGGTGAACTCTGGCAGCGACTGGCGTAGCCCGAACCCCACATCGTCAGCTACCTGCATACCCGGCAAAAGCCAGTAGCGTTCGGCAGTCGCTGGCAGCCCTGCTAGTTCACTGGGGGTCAAGGGGTCGTCGGTTCGAATCCGGCCGTCCCGACAAAGAAGAAGCCCTGACCAGCGGAAACACTGGTCAGGGCTTTGATTTTCTTCTATGGAGATTTGAACCGCCCCCCGAAAACCCCCCGTTTACGCGGTACGGCAACCAAGTTCGTCATCGGTGTGCATCGTTCTCTCCTGGCGACGATCCTTGGGTGCTCGGGTGGCTGCCGAGCCGTTCGAGGATGCCGGACACGTCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGCCCTCCGCGGCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 41529-39631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSZX010000008.1 Micromonospora chalcea strain N18 NODE_8_length_63290_cov_13.3286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 41528 37 100.0 40 ..................................... GGTCAGCGTGATCGTGGTTGATGTGTCCGAGTGTGGACGG 41451 37 100.0 36 ..................................... CCGGTCGGCCTTGGGGCATCCGGCTTCCAGCCACCG 41378 37 100.0 37 ..................................... CAGCCACTTCGGTGGTGGGAACGGGGTTCTGGTGCGG 41304 37 100.0 37 ..................................... ACGTCCACCACCACCGCGCCGCCGGCCGGCGCCGTAC 41230 37 100.0 38 ..................................... ACGTCGTCGAGGCTGTTGAGCGGCTTCAGGGTGGCAAC 41155 37 100.0 40 ..................................... GCTCCGCCAGTCAGCCGGCCTCGACGGTCACCAGCAAGGT 41078 37 100.0 38 ..................................... ATCGGTCGGCGGCCGGTAGCACGGCGTCGGCCACGTGC 41003 37 100.0 35 ..................................... GGGTAGGTGACCCGCCCGGCGATGAGCGCCAGATC 40931 37 100.0 37 ..................................... ACGACCATGGTTGCTGCTCCCTTCCGCAGGTCAGCCG 40857 37 100.0 38 ..................................... GTGTGGAAGCGCGACGAACGGACCGGCCGGTAGAGGGC 40782 37 100.0 38 ..................................... ATGACCGGCAAGGGCAACGCCGGCAAAACTATGGTCGC 40707 37 100.0 36 ..................................... ATCGTGGCCGCGCTGCTGTACGGCGGGATGGCCGGG 40634 37 100.0 37 ..................................... TCCGTGGCTGGCGTCTCGGCGCTGGCGATGTAGGTGT 40560 37 100.0 35 ..................................... GTCGCCCACGGGGTCGACGTTGTCGGCCGGCGTGA 40488 37 100.0 38 ..................................... ACAGAGGCCGGGGTGCGTGGGCTGCTCGACTCGGGGCG 40413 37 100.0 38 ..................................... CGGGAAGACGGGCGCGGCTGCCCCATCTGGTACCTCGG 40338 37 100.0 37 ..................................... CCAGCACGCCGTGCAGCGTGGAGCGCGGCGCGCTCGT 40264 37 100.0 38 ..................................... GGTAGGGGCTGGGGTTTGGGAGCCGGGATGGCTCCAAT 40189 37 100.0 38 ..................................... AGGATCGTGGGGGCGGCGCTGGCGGCAGCGTCGGCGAT 40114 37 100.0 38 ..................................... AGGATCGTGGGGGCGGCGCTGGCGGCAGCGTCGGCGAT 40039 37 100.0 36 ..................................... GGGCTGGACGCTCCGGGCTGGACGGACGTGCCGTGG 39966 37 100.0 37 ..................................... CCCAGGTACTGGCGCATCGGCCCCCCGCTGGCCGGGT 39892 37 100.0 39 ..................................... AGCTACGAGGTTCCGGCGTGGCGGTGGGAGAGGCAGCGC 39816 37 100.0 38 ..................................... CTGCGACGTGTCGCCCGGATCACGCTGGCAGTCGTCAG 39741 37 97.3 37 ............G........................ ATGCTGACATCTCCGGTCCGCTCAGCGAGCCCTAGCG 39667 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 26 37 99.9 37 GCTGCGCCCGCCCTCGACGGCGGGCGAGGATCGCAAC # Left flank : AAGGCAATCTGGCATCGCTATCGGTAAGGCCTGAGTAGCTCTGTTTCGGATTGCTGGCTGTTGCTCGTCAGCGTAATTCGCCGGAGTCGCGTGTCTCAGGGGTGTGCGGCATGGATGGGTCGATGACGTTACGTACAACTCGTCGAAGGGAGTCGAGGATGTCGGAAGAGGAAGTCCACAGGCACCTACTGCCTTTCAGGGCGCTGGACGGCATTTGCATGTTTACTGGGGTTCCTGAAGTGCTCCGGTCCGCTTGGCCTGTACGCCGAATAGCTCGCTGCCGACGGCGCCGCCCTGGGCTAACGCGCGTTGTGCTACTTCCGAGAGCTCGCCTCGTGGCTCCGCTCCGCAGGCCAAACGGTTGGGTGATCTAGGAACCTGTAGCAGTCATGCTCGACGCGGAAGGTCCCTAGGCGGCAAAAGATGTGAATCGTGATGAAGGGTGCCCAAGATCAACCTGAGGAAAGCCGCCTGCGATACGTTTTCACTGCTCAGGAACC # Right flank : CGCTGAAGGTGGCGTGGTGCCTGCCATCTGGGGTTGCCTTCCGGTGAACGTCGAGGGGCCGACATTTCGGCGCGTTACGTGGTTACGATCAGCGACCTGAAGCATCCATGGTGTGGGTACTGAGCCATGTTCGGGCCGCCTGTTCCCTACGCGAGGCAGACACAGTCGGCCGTCACGAGATTGGGGATCGCGCATGTCTGATATGAGACCTCTTTGGGCGCATAGCCCCGCTTTTGGCGGTGGCCCATGGCATGCTCTCTCGGATCATCTTCGGAGCACTGCCGAGCTCGCACAGCTGTTTACTGCATCGTTCGGCGGAGGTGATCTGGCCTACTGGCTGGGCGCGCTCCACGACGTGGGCAAGGCGGCCTGTGCGTGGCAGGACAAGCTCGCTGCTGTCGCGGCCACCGGCGCTCCCGTCGGTATCGACCATAAGGCGCTTGGGACGTGGGTGGCTAACGAGCGTGGACTGGGCGGCTTCGCCAACGCGATCTTCGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGCCCTCGACGGCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //