Array 1 272217-270553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBD01000008.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N31386 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 272216 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 272155 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 272094 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 272033 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 271966 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 271905 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 271844 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 271783 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 271722 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 271661 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 271600 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 271539 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 271478 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 271417 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 271356 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 271295 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 271234 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 271173 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 271112 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 271009 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 270948 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 270887 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 270826 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 270765 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 270704 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 270643 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 270582 29 96.6 0 A............................ | A [270555] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 289601-288475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBD01000008.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N31386 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 289600 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 289539 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 289478 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 289417 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 289356 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 289295 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 289234 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 289173 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 289112 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 289051 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 288990 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 288929 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 288868 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 288807 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 288746 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 288685 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 288624 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 288563 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 288502 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //