Array 1 667163-666649 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNW01000001.1 Streptococcus mitis strain KLC01 D8849_contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 667162 28 100.0 33 ............................ TGTTCTTATCAGCGTAGCTTACATTGTTAGCGT 667101 28 100.0 33 ............................ CTATTACCGTAGATATCATACAATTCTATTTCA 667040 28 100.0 33 ............................ CAGGTCTTCAATCTCTTGGTTAGGATGACAAAG 666979 28 100.0 33 ............................ CTCGCCTTTAGGGTTCAAACCAGCTTCTTTCAA 666918 28 100.0 33 ............................ CGAAGTGGAGGCGTTACTTAACTTTATCTTTTC 666857 28 100.0 33 ............................ TAGTTTAGCTGGAAGATCAATCGTCACATTTTT 666796 28 100.0 33 ............................ CGGTAGCCAACGAAGTTATTCAAGGACTTTGGG 666735 28 96.4 33 ....................T....... CTTCATGAAGATGGATTGGTCATCACTGTTCAC 666674 26 82.1 0 A...................-.-...TG | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAATGAACATACCATTATAGAAATTGGCGCACTTAAGGTTACTCCATCCACTACAGAAGAGTTTAATGCTCTTATCAAATATGACGGAATCTTGCCTACGAAGATTTCTAAATTAACTGGAATTTCTCAGGCTCTATTAGAACAAAATGGTCAAGATTTAAAAGAAGCACTTTCCGATTTTTTGCTTTTTATAGGTGAATCAGCTTTAGTTGGCTATGGTATCAATTTTGATGTTAAGTTTATTAACAATGAGCTTAACAAGTTAGGTTTACCTTTATTAACAAATAAAACTCATGATTTAAAGAAATTTGTAAAGAGTGAAAAGCTATTTCTGGCTAACTATCAATTACAGACAGCCCTTAAGGAATATGGAATTGAGGAGGTAGTTCCTCATAGAGCTTTACAGGACGCTAAGTTAATCTACCAGTTATCAATAAAAGTGAATAAATTTTTGGATAGAATCAATCGGTATTAGCGATTTCAATAGGATCTTTTAGT # Right flank : ACTACATAAAATGAGATATAAGAAAAATATCCCTATTGAAAACTGATAAATTAGAGATAGGAGTGTTTTATTATAGGAAAAAAGCATATTTTGTGCAAATGAAGATATCTTACATAACAAAGGAGAAGATAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAAGATCAGTTGGGTAACAAACTTGTAGAAGAGTATAAGAAAATTTGTCTTGTATCGGTTGTCTTAGAGTGTTTCAGAACTAAATGCTCAACCTCTTTTGATTGGAAAAACGAGACTAAAATCCTTCTGCCAAATCCCTAGCTCTTCTAGCAGGTGCTAGTGAGTCCGAAGTTGCTCCCCTCGTTGAGCGCCTCATCGCAGATAAAACCTTTAACTTAGAGACAGCCCAGCGCTATCTCGAAAACTTAAGATCATAAAAAACTCAGACGAATTCGTCTGAGTTTTTTGTACTTAAATACTTTTTCCTGGTAATAGTGTGACTGGTAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34568-34012 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNW01000007.1 Streptococcus mitis strain KLC01 D8849_contig007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 34567 35 100.0 30 ................................... CGCTTACTATAGCTTTGAGAAGCTGACTAG 34502 35 100.0 30 ................................... AGATGCTTTTATTCAATTTAGAAAACACAG 34437 35 100.0 31 ................................... CAAAAAGAAAGTAAAAAACTGGAAGAAGAGA 34371 35 100.0 30 ................................... TGCTCCATTTACCCCTAGCATGACTCCGAG 34306 35 100.0 30 ................................... TGCTTTGCAATTTCGCCAAAAGCAGACGCT 34241 35 97.1 30 .....................A............. AAAAAGGCGACAAAGTTCGCGTAATCGCTG 34176 35 88.6 30 ........G.....C......A....T........ TCAAAGGTATAATAAGTCACATTGGCAGGA 34111 35 91.4 30 ........G.....C......A............. ATCGTACAATGCTGGGAGCTTTAGCTTCAA 34046 35 97.1 0 ..............C.................... | ========== ====== ====== ====== =================================== =============================== ================== 9 35 97.1 30 GTTTTTGTAGTCTCTAAAATTGTGACCGATAAAAC # Left flank : TAAACCAAGCAATCCAACCATCCATTCTTCAGGCACGAAATTAACGATATAAGCAGCAACTAAACTCGCCCCTACAAGTAAGCCTGTGCCTAGATATTGTCCCGCATAAATATGCCATTTTTGTTTATTCTGTGATAGCTGTGCAAATAAAATAAATAAAATAATTAAATAATCGATACTGGTAGAAATATAAACACCAATAGCAGATATGATTGTCTGTACCATAAAAAAACTCCTGTATTAGTCAGTAATAAATCAGCAGATTTTAGGAGAGCACAGACACATTAATTTAGCTATCGCTAGTGGGTAATGTCGAACATAGGAAAGCATTTTACTCCTCCTCAAAACGTAGTTACAAAGTAATTTCTAACTGGAATTCGGTGACTACTTCCATGTAAAGTATAAACATACTATACTTTACTTCGTAAAGTGTGGGCTCTCCGAGGGGGCTTGCAGACAGCTACGCACCCTTATGGTGTCATTAGCTGATACCATTTGAG # Right flank : CTCAATAAAAAAGCCCCCTGAGATCAGAGAGCTGATTTGAGCTCGGGCTAAAATCCATACAAAAAAGCTACCTAATTAGACTAGCTTCATTATCAAGACATGCTCAATTGAACACGGCCTAAGCACTTGGCAAAAAAGATAAAATCTCCAAGAAACTGAAGTTTCTTCGTCAATTTTCCTATTTTTGCTTTGTGCTTTTGACGGCCTTTGTATCTTGTTAATTGAACACGGCCTAAGCACTTGGCAAAAACAAAAAGCCCCCTGAAATCAGAGAGCTAATTTGAGCTCGGACTAAAATCCTAATGAAAAAGATGAAACTCCTTGTGTTCATCGAAAACTGTGTCGTTTCCCTATTTTCATACGGATTTTTGGCACCCTTAGCATCATAATTCTTGCCGGATAAAACGTTTACAGACTAGGCGAAGATTGTACAAAATTTTTAGTGAAACAAAAAAATCTCCCCTAAGGGAGAAGATCTGGTTTATTTTACCTTACAGTGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTAGTCTCTAAAATTGTGACCGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //