Array 1 11771-10621 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQQ010000036.1 Anaerobutyricum hallii strain SM6/1 scaffold_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11770 30 100.0 36 .............................. CAAGTTGCTTCGAAAAGAGTTTCCCACGGTCCCCAA 11704 30 100.0 34 .............................. GTGATTGCCTTTACATCAGACATTCCTTTTTCAA 11640 30 100.0 38 .............................. TCATGCTCCATAAAATAATCAAGCACTACTTCATCTGT 11572 30 100.0 35 .............................. AATCTTTTGTTTCTTCGTTAATTGATGGTCTTCCA 11507 30 100.0 36 .............................. AAGAGCGAATGCAAGTTCTTTGAACGAGAGGGCGGC 11441 30 100.0 37 .............................. ATGATTACCGGAAAAATTGGTTTTACCATGAAGACGA 11374 30 100.0 37 .............................. GACTATCCGCAAGAAATTAAGAGTGTGGTGAATCCGA 11307 30 100.0 35 .............................. TTATTTAACCACTCTATTGAGTTGTCTGATAATTC 11242 30 100.0 36 .............................. AGAGAAACATCCCAAATTAAAGGCAAAATATACTGA 11176 30 100.0 36 .............................. TAATGTTATGAAAGGTCATTATGGATATGTGCCATT 11110 30 100.0 36 .............................. TATGCTTTATCAGCAGATGATATTCGTTTGCTTTGT 11044 30 100.0 35 .............................. ACCACAGCTAATATTGCATGGCAGTACACATCTAA 10979 30 100.0 35 .............................. TCTTTTACAATGTTCTTTGTGTATAACTCATCTGC 10914 30 100.0 36 .............................. ATGACAAGAGGAGATTACAATGATTACGGAGGCTGG 10848 30 100.0 37 .............................. TACCAAGTTTATTTGGTATCTCAATCTGTGATGAGCG 10781 30 100.0 36 .............................. AAGAGGTTAGATAAAAAATATTTCTACAGAAAAATC 10715 30 100.0 35 .............................. GAAAAATACCATGTAGGAATTTAGTATTTTTTTAG 10650 30 76.7 0 ...............C.G.A...A..TCG. | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.7 36 ATTAAAATAGAGACATAATGGAATGTAAAT # Left flank : ACAGCGACAGAAATTAAGAAACCAGATTATGGAGTATACCGTTAACGTTCCATATTATCATTGGAAAAGTTATCAGGATGCTCTAAATTCCAAAAAAACTTCTGGCAGAAAAGCAAAATATTATGAACCAATTCAAATAGGAAAATATGAGAAAATCAAAGTTATGGAATGTAACTATGACAAAAAAGGATATAGCCCGATAGAATGGACAAAGAAAATGGAAGATAATGAATAGCAAAGCATAAAATGTGGATATCGTGTTATTATAATATTTTTGTTTGTGTCACTTTGTTGCGAGATATGTTACATAAAAAATGTCGACCTCCAATAATGTAAAAATCCCCGTACATTGACAGCGATTAAAAAACACGATAAATAGGACATTTTCCATCAATCTTGTAGAAGAAACAAGAAAAATATGGTAAAATATTTATAGCTATTGATAGGTCGACAGAAAGTGGGTGGAAAAGAAAGAAAATAAAAAGAGATGGGGAGGATGG # Right flank : TTGATATAATAAAAAATGGATGAAAATATATGAGAGGAGGAACAAAGTATGGGACGATTTGTTGATCCAGATAATAGTGCATTTCAGGATGCATTAAGTTCAAAAATATATATTGATAAAATGGGATTGATTTCATATACGAACGGTGTAATAGACATGACAGAGTAATTTATTTATTTTTTATCTTCCCCCTAAATTCAAAAAAATTTTGCAAAATATCAAATACTCATATACAATAAAGAACAAGAATATACGGAAGAGGGGGAGTGGCATGATTTCGGATGAGATGGCTTATCGGCAGTATTTGGACGGGAAAGAAGAGAGCGCGGATATTCTTGTTGAGAGATATGGGGATGCACTTACATATTACATAAATGGATATATCCATGATATTCATGAGTCAGAAGATTTGATGATAGAGGCCTTTGCACAGATTTTTGCAAAGGAGCGTCCGATTGATGGAAAAGGAAGTTTTAGGGCATATCTGTATAAAACAGCAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATAGAGACATAATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1970-2203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQQ010000176.1 Anaerobutyricum hallii strain SM6/1 scaffold_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1970 33 100.0 36 ................................. GCCATCAATCTTATCTTGGTGCTTCGAGCGTCCAAC 2039 33 100.0 33 ................................. ATGTTTAATATGTGTGTTTTTAATAGTATTAGT 2105 32 87.9 35 ............-GT..A............... TGAAAAAGAGCAAAAACTAAACCTCATTAATAGAA 2172 32 90.9 0 .......-.....G...A............... | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 94.7 35 GTCGCATCCCTTCACGGGTGCGTGGATTAAAAT # Left flank : AAAAGAAAAACTTGACCCGAATTGCAGAAGAGATGGGAGTCAGCAGCAACTACATAGGCCAACGGAGAAGATACAGTCTGCGGAAACTTTATCAATATAAATGCTGTGCCTGCCTGCTGCCAGAATACAAAAAACTTCGGAAAGATGTCCGAGAATATGGACAGATGCAGGAAATACAAAAAGAAGCTTACACAAGGGAGGGGTAGAAACATTGTCCGAACTCGCTGGCTACAGCAAAAAGGAAGTGCTTTCTGTCCGACTTTTTAAAAAATATTCTACAGAAAAATCAACCAATCTCAAATTCTGACATACTATATATGAGAAAGTTGGTGCGAATCGGAAGCAACGTAAAAATCCCAGGAGATTCGCACTACAAAAATAAAAATATTGTTCTTACTCTTCTAAAAAAAATAGAAATGCGAAAGATGACAATGCCTAATTTTTGTATAAACTTTCTAAATAAAGCAGCGAAATCGCTACCAATTTTATACGATTTCGCT # Right flank : TTTAATTTACAACAAACAAAAGATTGGTCTGATATCTCTAATGGTAGACAGAAAGATTTCGAGTCCGTAAGGAGCGATTGGGAAAATGTCGGAACATACATCCGAAAAGGAACAAAACGAGCGGCAGTGGCGGGCGGAGGAGACGGTATCCCCCACTGACATGAAGTTAAGTCATGTCGCCATAAATACGACATGTCGGTCGTTATTATAGCGACTGTGGATTAAAACAATCCCCCCTACTGGCTTCGTAATGTCGCATCCCTCGCGGGTGCGTGGATTAAAACTAACTGGGAGAAAGCCGTAGAAAAAAGTCGCGTCCCTCGTGGATGCGTGGATTAAAATAGGAAAAACAACAAGCATGAGAAATCTTGACCCTGGTCGCATCCTTCGTGGGTGTGTGGATTAAAATATCATTGGAATCAGACAAGAATAAAAATCATTTCGTCGCATCCCTCGTGGGTGCGTGGATTAAAACCGGATACTGTGCCGTCAACTACCCA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTTCACGGGTGCGTGGATTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 5271-5502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQQ010000176.1 Anaerobutyricum hallii strain SM6/1 scaffold_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 5271 33 97.0 31 ................................T TGCAGTTCAGCAGATGATAAATCAGTGATAC 5335 33 97.0 32 ...............................C. GGGGAATGGAAGCGTGGGTGGAACAGAGGAGC 5400 33 100.0 37 ................................. AATAATTGTACCCAAAACTTCTAAAACTTTATCTCTT 5470 33 90.9 0 .........T..A..................A. | ========== ====== ====== ====== ================================= ===================================== ================== 4 33 96.2 34 GTCGCATCCCTCGCGGATGCGTGGATTAAAATA # Left flank : TTTTTTAAATATATTATGAAAAATAATATCAAATGTCCATTACCTAAATTACATCATTCTGTTGATGAGGATAGTAATTTGATAAAGATTGGCATAAAAAGAAAAAATGTAATAGTTACATTATATTTTTCTTTCGAGAAAGAAGAAAGAGAAAGTAGTTTTGGATTTGTCTGGAATGATACTGAAAAATTGAATTTTTATACAATGAGTGGAAATTTGGAATTAAATGATTTAAACAAAGTGTTACGCGACATGGTGGAATTTATATTTATAGCTTCTACAGAAAAATCGAAGGATTTCAAATTCTGACATACTATATATGAGAAAGTTGGTGCGAATCGGAAGCAACGTAAAAATCCCAGGAGATTCGCACTACAAAAATAAAAATATTGTTCTTGTTTTTCTAAAAAATAGAAATGCGAAAGATGACAATGCCTAATTTTTGTATAAACTTTCTAAATAAAGCAGCGAAATCGCTATCAATTTTATATGATTTCGCT # Right flank : ATTCCTAATCTGTCATACTATAAGGGAAGGGATAATATCCCTTTGTTTGCGGGGCAGGCAACGGTCCAGTCCGTCCCGTATACTACCAATTAAACAAATCTTTTGCAGAGCAGGAAAGGAGTTTGCTATGATACGTTTTAAACAGGTCGTATCCGGTGTACTGACAGGCTTTTTATTCTGTGGTTCTGCCATCAGTGGAGCACCACTTATTGCAGCAGCTAAAACAGAAACCACATATAGCCTGACACTCGATAAGACAGAAAACGGTTCCGTCGCTATCTTTGATGCAGAAAAAGAAGCAAAGAAAGATGAGAGCAAGGAGCAGCAGAACACAGAAGCTACTACAAAAGAGAAAGCTTTAACCAAAAAGGTGAAGGCAGGTGATACAGTATCCATTAAGGTAAAGCCGGATGCTAAGTATATCATCAAAAAGCTGTCCCTTATTGATCCTGAAACAAAAAAGAAGCTGGATGTTGAACTTTTTGCTGATGAAAAGCATG # Questionable array : NO Score: 3.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTAAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //