Array 1 215049-215404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGI01000018.1 Clostridium tetani strain ATCC 453 Ctet453_contig_18, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 215049 30 100.0 36 .............................. AAAAATATAAAGAAAAAGATATATAATATAATCAGG 215115 30 100.0 34 .............................. GCAAATCAAATATTTCATCTAAACCTTTTTTAAA 215179 30 96.7 36 .A............................ TTTAAAACTACATTCAGCCTTCCTAAATTCCTCAGG 215245 30 100.0 35 .............................. GGATCCAGCTATAAGAATAATTCTAATTTTATCCA 215310 30 100.0 35 .............................. TTAGCTTTTCTAATAGAAGGCGTTATAAATGCTAG 215375 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 ATTTACATTCCAATATGGTGCTACTAATAC # Left flank : TAAATCAATGAATAACTAAAAGTTAGGAATTATGGAGGATTTTCTTACCTGTATCAGAAAGTCTTATATTTTATTGAAAAGCCAACATTGGATAAAGTTCTATCCAATGTTGGTTTTATAATTATATAGATTAAAAATGTGTAATTACTAATGATTTTATCATGGATAATATTCCATCCATGTTATGTTATAAAATAAACTTTTCTTCATATCTATTTCTTCTTTATTTAAATAACCTCGGTTAAATTATACATAATAAACATAAGATATACAAAACATTGTAAAAAGGTTTTAATAACATTTGAAATAGTAATATTACTAAAATACTCATAAACTTCATAGAATCTAACATTATACCCATTTTCATTTAACATTAAAAAATAAAGTGCTTACTATTTCTTAGGGTATCAGTATCCAACTAATATATATAGTTGTTTTGATTGTTACGAATAGTGTTACTGATACAATTTATACCTATTTTATCTAAAATCTACAGTTAT # Right flank : CACGTTCATCTATGATGCACTATATGTCTATAGTATAACTTCTATTTCTGTCTACCTACTAAGTTGGGATTTCTTATAGTCTATTATTATAATACAAGTTATGTTAAATAATTTATAAACCATTAATATAACTATAATTGTCTACTCCCTTATATTTTAACATCATCTTAGGTAGACAATCAAATAAAGTTACTGGTTCTATCTTCTTTTTTACCCCACATATCTTTAGTTAACCATCTTTTATTTCTACTTTTGAATAATATTACAGAATCTTTATCTTTTCTTATTATATCATCTAATTCATATTTTAGTTTAATTATTTGTGACTCTGCTAATTCTCCTTCAAATACTGAGTTTTGAATATGGGACAAATATTTTTTACATACCTTAAAAGTTCTATTTAAAACTCTCTGCCCCTCCTCACCACTTTTTATATCATAAACTAATATAACATACATTTAAATCTCTCCTACCACCATATTTTAAATGGTTCATATTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATATGGTGCTACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 14269-14881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGI01000025.1 Clostridium tetani strain ATCC 453 Ctet453_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 14269 29 100.0 36 ............................. ACTTGTTAGGGGGACAGAGAAGATATTAAAAGAAAT 14334 29 100.0 36 ............................. AGGAGCATGTCTACTCTACACATCTTTAGTTCCTCG 14399 29 100.0 38 ............................. CCCATTAGTTCAACATAATCTACAGTATTCCAATTTAG 14466 29 100.0 33 ............................. ACAGCGGATGCAGTTATGCAACAAAATAGTTTG 14528 29 100.0 35 ............................. AACAACTAAGTCACAAGAAGATTTACAAGACTTGG 14592 29 100.0 37 ............................. CCAAAAGGATTCCTTTCTGTTTTAACTGCCCCTCTAG 14658 29 100.0 35 ............................. TTTCTTCTTGGCTAAAACCTAAAATTGTCCATTTG 14722 29 100.0 35 ............................. AATAAAACTATTAGCCGAGATAAAAAAAGAGCCAG 14786 29 100.0 36 ............................. TTATTTTATCTGCGGTTTGAGTTAACGAGCTGCTAG 14851 29 93.1 0 .......................A.C... | CC [14876] ========== ====== ====== ====== ============================= ====================================== ================== 10 29 99.3 36 TTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AATTTTAATTTAATATCGAACCACCTTAAATTAATGCCCGAAAACCTTCGAGATAAACAACGGAAGTTTTCAGGCATTTACTACAAATATAATATTTTAGATGCAGAGGACAATTTAGTTTTAATGCTTGAAGGGAATTTTACAATAGTTTCTTGGATGACTACCTGCTCTATCTTTAAAGTTGGAGTAAAGAGCATTTACGTCTCCGGATAACGATTTCTAAGCTTTAGATGGAGTAAAAACTTTCTCTAAAGCTTAAAACTCTATTTATAAAAATAATCATATATTTATAATGTTATGTGATAAAATATAGACAAAAGTTTTCCCAGGTAATTTTAAATAAGAATGTAGCCTAAGGTATTGATTTAAAAGGGTTTATACCCTGTTTTTTAATGTGATTTTCCAAAAGTCAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTGTGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTAGT # Right flank : TTATTTCCAAATATCTTATTCTATCAGCGTCTTATCACCGGGCAGTTCAGTATAACAGTAAAAGGATATGATGGATTTATAGCAGAGTAATGTTAGAGGTAGTTTTTAGCTTAGGCTAGGAGCTATCTCTTTTTTATTATTGTAAAATATCTAATAATGTAATAAATATTTACATCTGATCCTATATTGTACTATAATGTAAATAACATTGCGAAATAGGGGGGATTTAAATGAAAGCTTTAACTAATATAGGTAAAATGCTTGCAATATTAATAATTTTATCCATAATAATAACCATATCACCAAAGCTTGGGTCTATAGTATTTATGATAGTTCCAATAATATATTTAATCTATCTATTCAAGAAAGAATCTAAGTTTAAGAATTATAACTTTTTACTAAAAGGATTAATTAGCTCTTTTTTAGTATTAGTTTCTATTACAGGAATTGGAGGAGTTTTTTCTGAATTTAAAGAAGAAGATAGTAAGTGGAAACAAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 220423-221035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGI01000005.1 Clostridium tetani strain ATCC 453 Ctet453_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 220423 31 100.0 34 ............................... ATATTAGATCCTACACTAGTAATTCCTATAATAG 220488 31 96.8 35 ..............................A TAAATTAATAGATTCGGCAGATGTTGCTGGAAATA 220554 31 100.0 33 ............................... TAGCAAACTCTAATATTTCATCATCACTTAATT 220618 31 100.0 34 ............................... TGTTAGATGGAGGTTATGTATATATGTCGGCTAC 220683 31 100.0 33 ............................... GTATATCCTGGAATGTAGCATATTTACATTCCC 220747 31 100.0 33 ............................... TCTTTTCTATTGCTCTAGCTATTCTTCGCCAGC 220811 31 100.0 34 ............................... TGAAGCTTTTTACTCTTTTAAATGTACAGATACA 220876 31 96.8 34 ..............................A CAAATGAAAATAATAATAATGAATGGGAAAAAGA 220941 31 100.0 33 ............................... CCCTAGTTAGGAAGTGGAAAAGCCAGGATAAAT 221005 31 96.8 0 .............................A. | ========== ====== ====== ====== =============================== =================================== ================== 10 31 99.0 34 GTTGAACAATAACAAGAGTTGTATTTAAATT # Left flank : TACTTGTTAAACAAGTTGAAACTTATCAAAGTAGAAGACTAGAAGTTGCAAAAAGTATAGTGGAGGCTATTGGAGGTAATATATACGAGCTGTTATATCATTATTATAAACATGATAAAAAATCATAGCAAAATAAACTTGAAAAAAGCCAATGATATAAAACAAATAATGCAAGTGGAAGGGGAAACTTGGCAAAGATTTTATGGCGAATTTAAAAATATACTTCCAGAGGAATTCGTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCATACAGTTGTACAGGGGAAAACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TATATATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTTAATATCTTGTTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAATTAGATAGCATATTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATATTTGTTAGAGAAAAGACTAAATCATATGAAAGAATACTTGCCTATAAAAATAAGTTTTGAAGCTATAGATACAGAGGGATATAGTAAAGTTGAAAAATTTTTAAGTAGTATAATGATGCAAATAGTGAACTATTTTAGATTTTCAACCAATAAAGAAATGTATAAATTCATAAAAAATTGTGAAAATCAAATTACTAATATGAATGATTTTAATAGTTTTATAACAGATTTAGTTGAGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAATT # Alternate repeat : GTTGAACAATAACAAGAGTTGTATTTAAATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 223010-223421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGI01000005.1 Clostridium tetani strain ATCC 453 Ctet453_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 223010 29 100.0 37 ............................. TCTAATGCCGTTTGTGCATCTTCATCTTCTGATGTAG 223076 29 100.0 37 ............................. GAGGTAATATGCATCAGTGCATTTTGTAATGTGCTGA 223142 29 100.0 36 ............................. AGGAAGATAATTTTGTAGTGTATAGTGCAATACCTG 223207 29 100.0 37 ............................. TTGGCTGCATATTGTCAAGCTTACCATAGGTGGGTGG 223273 29 100.0 38 ............................. AGGATTATTGGCAATACTAGTTATAATAGGAGATATCG 223340 28 86.2 24 ..A............T.-..........A ATAGTTTAAATTGTAATAGTATAC T [223353] Deletion [223393] 223393 28 75.9 0 ..-....A......GA.....T.A....A | A [223416] ========== ====== ====== ====== ============================= ====================================== ================== 7 29 94.6 35 TTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AATGTATATACTAGAACTTAAAATATGGAGAGGGGAAGAATATCACAAAAAAGGACTAAAACAGCTTGGGGAATACTTAAATCAGTACGGATTAGAAGAAGGTTATCTTTTAATATTTGATTTTAGAAAAGATACAAATTTAATAGGTAAAACTAAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGAGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGAAGTATAGCTTAGAGTGTTGATTTATAAGAGCTTACATACTATTTTTAAATGTAATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATTGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTGG # Right flank : ATAATATTATGGAAAAGAGATTTATATTTTAGATCTAATTATTAAATTCAATAGTATAAATTGTAATACTCTTAGAAATAATATATGTATAATCACAATAAAATAAATATAAAAAATAATGTTAATGTACTATTATGGAAACAAAAGGATGGATAAAAATGAAGAAAAAATTAAAATTCTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGAAAGGATAGAAATTGATGATATCATTTATATAATTGAATTAGTTTCAGTTATTACATTAATTTTAAAAATCTTTCAATTCATAAATTAAAAGATATATTTTTTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAATATAAAATATTATGGTAAAATATATATTATAATGAAGATATAAGGAGGTGAAAAAGTGAAAATATATGAATTAACATTAAAGGTATTTTTACTTAAAGACATTAAAAGTGATGAAAGTTTAGAGAAAATAT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 232656-233269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGI01000005.1 Clostridium tetani strain ATCC 453 Ctet453_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 232656 30 100.0 35 .............................. GTGTATTTAAATACAAGTGATAGCGAAGTGAAAAA 232721 30 100.0 35 .............................. AATAATCTAATAGGTGGAGAACAATACGCAAGTGG 232786 30 100.0 34 .............................. GATGCATTAAAAGAGGCTAAGGGCAAATTAAAAA 232850 30 100.0 36 .............................. AAAGTTGAATCTTGCCAATATACAAAGTCAACAAGC 232916 30 100.0 34 .............................. TGGTTTAAATCCCCTACATACTGTACTAGTCCCT 232980 30 100.0 36 .............................. TTGAATTTATGATTTTTGTTTAATATAAAATTAATA 233046 30 100.0 34 .............................. CTCATTGGAGCTTATTGGAGTAAAAAAGAAATAT 233110 30 100.0 36 .............................. TCAAAATTCTGTAGCAATCGAAGAATATATACAGTT 233176 30 100.0 34 .............................. GTAGCTCCATCCATCTGCTTTATTTCTTCTATAA 233240 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 99.7 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ACAAAGAATTTAAACCCTTTAGTTTAAAGGAGAGAATGTAGATGAGTAAAAATTTTAATTATAATTATGCATTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAATAGAGTGTTCAAAACCTGTAAAAAGTATTTGTCACATTTTCAAAAATCTGTATTTAGGGGAGAACTTACACCAGCAAATTTTATATTATTAAAAAAAGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCACACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTGTAAGATATTGATTTATAAGGGGTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCNNAACAATAACAAGAGTTGTATTTAAATGTTATCCAACCTAAATGGATATGTTGGGATAAGGA # Right flank : ATATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGGGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 239570-239988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGI01000005.1 Clostridium tetani strain ATCC 453 Ctet453_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 239570 30 100.0 35 .............................. AGTAATAACTAGAGAGGACATTGTTAATAAGATAT 239635 30 100.0 34 .............................. ACAAGTTACAGTTAAAACAGGGGTAGCAAGTGTG 239699 30 100.0 36 .............................. TGCCTTTTATATAATGTCTGTAATGCACTTATCTCC 239765 30 100.0 35 .............................. ATAGATAATGGTTCATAACCTACTACATCCATTTC 239830 30 100.0 35 .............................. CTTTTAGAAGAAGTAAAGAAATGGTTACTTTCAGG 239895 30 100.0 34 .............................. TTTTTTTTATTTCTGTTTTATATTCTACGCCTGT 239959 30 93.3 0 .........................C.C.. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.0 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGTCAATCTGTGGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAACGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TAGTGACTAACTACAATTTACTGCATTAGTTACCATTTTGTTATTGTTATAAATATATTGGTACGAATAAAAACTAAATATAAAATTGAAAAATAAGGAGTCTTCTAAATTTAGACTCCTTATTTTTCATGGTATATGCTGTAAATTATTATGTAAAAATGTTATATTTTAATAACATATGGTACAATATAGAATAACAGAAACGTTTTGGTTATATGAAAAGTTTATAGAGTGATACTTGGGAACTTAAAATTTTTAAATTAAATATGTAAGGGGGATTTTAATGCATATATCTCATAAAGCTCTTTTGTATAGTTTTTTACGATATGTTGAATCTATTGATGAGAAACTATACAAGAAAAGTAGTTTAAGTATAAAAGATAGATTTTTAGATCAAATATTACAAGAATCATATGAACTAGTAACACAAAATATACAGATAAAAGCGAATAAAAGTGGCACTTTTAGATTAATGAATATATTTTCTAATATAGATGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 251766-252184 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGI01000005.1 Clostridium tetani strain ATCC 453 Ctet453_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 251766 30 100.0 35 .............................. GTTATGCTGCAACTATGTGCTATGGTTGCAAGAAA 251831 30 100.0 34 .............................. TCCCTTTCTTTTTGGCATAATAAAAAACTAGCTA 251895 30 100.0 36 .............................. TTTATATTTGGATTAACAGTTGTTAATTTAGCACCA 251961 30 100.0 34 .............................. TAATATTTAAGTTTTTCTCGAACCTCTGCAAAAC 252025 30 100.0 34 .............................. AAAAATAAAAAAAGAGGTAGCTCCTAGCCTAAGC 252089 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 252155 30 90.0 0 ............T...............TA | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 98.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TGTGAGCTTTTCTTTTAAAAAACTTAACGGTGTATGGCAGCTTTTACTATTGGACTCTAAAAAAGACGATGAAATAACGATAATTAATAACTCTAAAATAGATGAGGGAAAATTGTATATTGGAGTTTTAAATTCTGAGAATGAGATTATTGCTTTTGATAAAGAAAAGCAAGACAAAATAACATTTGTAACTCCTGAAGAGGGATGCTATCTCATTAGGATTTTAGCTAAAAACTCTAGTGGAAAATGTGATGTGAAAGTAGATTCTAAAAAAGGTATAGATCTTAATTACAATTCTATTAATGGGCATAATATGGGTTTACTAGAGAAAAATAATTGAATAAATTTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCATTGATTTAACAGGGAGTGATTAATGTTTAAAGGGAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGATTTTACAGTG # Right flank : AAACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTATTATAAACTTATTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //