Array 1 107527-106275 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGX01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033853 CFSAN033853_contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107526 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107465 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107404 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107343 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107281 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107220 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107159 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107098 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107037 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106976 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106915 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106854 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106793 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106732 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106670 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106609 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106548 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106487 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106426 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106365 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106304 29 96.6 0 A............................ | A [106277] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125458-123659 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGX01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033853 CFSAN033853_contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125457 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125396 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125335 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125274 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC G [125257] 125212 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125151 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125090 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125029 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124968 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 124907 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124846 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124785 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124724 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124663 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124602 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124541 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124480 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124419 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124358 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124297 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124236 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124174 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124113 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124052 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 123991 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123930 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123869 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123808 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123747 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123686 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //