Array 1 51150-52153 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYT01000007.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2813 NODE_7_length_232239_cov_4.86613, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51150 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 51211 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 51272 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 51333 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 51394 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 51455 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 51516 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 51577 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 51638 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 51699 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 51760 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 51821 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 51882 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 51943 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 52004 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 52065 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 52126 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68423-70466 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYT01000007.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2813 NODE_7_length_232239_cov_4.86613, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68423 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 68484 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 68545 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 68606 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 68667 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 68728 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 68789 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 68850 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 68911 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 68972 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 69033 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 69094 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 69155 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 69216 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 69277 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 69338 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 69399 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 69460 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 69521 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 69582 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 69643 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 69705 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 69766 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 69827 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 69888 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 69949 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 70010 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 70071 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 70132 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 70193 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 70254 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 70315 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 70376 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 70437 29 93.1 0 A...........T................ | A [70463] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //