Array 1 431886-433374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHN010000001.1 Listeria seeligeri strain FSL W9-1330 NODE_1_length_433415_cov_96.823669, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 431886 36 100.0 30 .................................... TAGTAACAGGGGAAGTGCTTTCAGCTAGAA 431952 36 100.0 30 .................................... TCTTTTGGATAATCCTCTAATTTGGCAATA 432018 36 100.0 31 .................................... CATTCTTCCGCTTTGTCGCTAGTGTAGGTGA 432085 36 100.0 30 .................................... TTCGCTTCCGGCACGGCCACATAAATGTAA 432151 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 432217 36 100.0 30 .................................... CAAACTTTTTTATTTCTTTTTCTGTGAATC 432283 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 432349 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 432415 36 100.0 30 .................................... ACGGACGGTGTAGGTTTTGTCAGTGATACC 432481 36 100.0 30 .................................... TGTCCTTGTTTAATCCCGGTTCTAACATGA 432547 36 100.0 30 .................................... TTTTGATATCCCGGAGACTATCGACAAAGA 432613 36 100.0 30 .................................... TACCCGGAATTGGAGAATTTGGGTCATCAT 432679 36 100.0 30 .................................... TATCTCCCAAATATAGAGGTCTTATCGAAC 432745 36 100.0 30 .................................... CATGCTGATGTTTGGACTGATACGGAAGTA 432811 36 100.0 30 .................................... TTCGTATAGATTAATTGCATCGGAGTCCAA 432877 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 432943 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 433009 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 433075 36 100.0 30 .................................... TACGCAAAGACCAGATGCTAGCTTTATGCC 433141 36 100.0 30 .................................... CGTTTGCGGATTGCCCTCGTTAACGATTCG 433207 36 100.0 30 .................................... TCTAAGAAAAACAGAAAATAATCTTTTAAA 433273 36 100.0 30 .................................... AATTTAGCAAACTTTTTGGCTTTGACCATT 433339 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGTGAACATGATGTAGAAGTGAACGTCTTGGTTTTAGAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 120688-121294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHN010000003.1 Listeria seeligeri strain FSL W9-1330 NODE_3_length_413284_cov_82.328668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 120688 29 100.0 36 ............................. TAAAACTTCTCAAACCAATCTAATTTACTCTGTAGT 120753 29 100.0 36 ............................. AGTGAAGGACATGCCCACATGGATGCAAAAAGGATG 120818 29 100.0 36 ............................. TGATACACAGCCTACTAATGCAGCTATTATCAAAAC 120883 29 100.0 34 ............................. TAATTTGTTCGGCTTTTTCAGCTCGTTGTTGTGC 120946 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 121009 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 121073 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 121137 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 121201 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 121266 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 10 29 99.7 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : TGTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 127518-129688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHN010000003.1 Listeria seeligeri strain FSL W9-1330 NODE_3_length_413284_cov_82.328668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 127518 29 100.0 35 ............................. CTCTACCTCGTCTAATTTTGGCAGAGTGGGATTTA 127582 29 100.0 36 ............................. CATATTCTCTAAACATCTAATTATCCTCCTATTTTT 127647 29 100.0 36 ............................. CTGTTTAGTGCTGTAAAGTGATACTGTATCGCCGTA 127712 29 100.0 37 ............................. TCAGGTCGTGTTCCGTTTGCGGAAGTATATCGTTGTC 127778 29 100.0 36 ............................. GCAGGTAATAAATCAAGTGTATCAGACATTGGAATA 127843 29 100.0 36 ............................. ATCTACATCACCTCCTCAATATGTTGTCACATCGTA 127908 29 100.0 38 ............................. TAGTTTTTGGGTTTATTAATAAGTCATTGTAGAGGTGA 127975 29 100.0 36 ............................. CCTAAAATGTCAGCAAAATCATCTACGCTGGAACCT 128040 29 100.0 35 ............................. GTAACAACGGTGATAAGTCGCTGTAACAGCTCGTT 128104 29 100.0 36 ............................. AATAATGCATGTGATCCAGTGACATCCAAAAATGCC 128169 29 100.0 34 ............................. TGGCATTAAAGGCATACGAGAGTCAGATGCAATG 128232 29 100.0 37 ............................. TCTGTAGTGTGAAAATGATGTGAGGAGCTGGCTAGAC 128298 29 100.0 36 ............................. AACGCTTTCGTGCGGTGGCATTACGATAAGACCAGG 128363 29 100.0 34 ............................. CAATAAATGCAGTAATAACATCCATTTCCGATTT 128426 29 100.0 37 ............................. TTCTTATTATCAATATTTTCAATACTTACCAACTGTC 128492 29 100.0 36 ............................. TATTTTTTTAATTAACAATCGCTTTGATGAGTGCGC 128557 29 100.0 35 ............................. CCAGATAAAACCTGGGATACCTGCTTTTTGATGCC 128621 29 100.0 37 ............................. GTGGTAACAGCGTTTTTGTTGCCGATAGGTGCGCTCC 128687 29 100.0 36 ............................. TGTTATCTACTCCGTACTGTTCAATCAATGGCAACC 128752 29 100.0 34 ............................. AAATTTGAAGAAGTAAAAGAACCGGATGAATTGG 128815 29 100.0 37 ............................. GAAGGGGGTAGCGCTGGGAGACAGTTGTTGTTACTGC 128881 29 100.0 35 ............................. TTTTACTGACCTCGATTCGCTTTTAATTTTTCACC 128945 29 100.0 36 ............................. ACCGTAATTAATAAAGGCAATGCCGCAATTATGGCA 129010 29 100.0 35 ............................. ATCATTCTCATGTGTTTTAACAGGTTTTAGCTTTT 129074 29 100.0 36 ............................. TCGATTAGCGCAAATATAAGCTTCACACCTGCGTCA 129139 29 100.0 35 ............................. TCGTGATAAACCTTTATCACAAAACCGCCATCGCT 129203 29 100.0 35 ............................. CCCATTAAAATAGCAGAAAACAGCACCGCAAATGC 129267 29 100.0 36 ............................. AAAGTCTTTCGCAAAGTGTGCGTCCCCACGCGATCA 129332 29 100.0 34 ............................. GTTGAAGAAGTGGAGGGAAAATAAATGACTTTGA 129395 29 100.0 39 ............................. CTAATAGTAGACGATTATTGGGACGATGTATTCCGACAT 129463 29 96.6 37 .......................A..... TCTTATTTTTCCTCCTCTAAGTATTTAAAAATTACCG 129529 29 100.0 38 ............................. CGAGCTATTGTATCATTTTTGAAGTAATCTAGCTATAA 129596 29 96.6 34 ........................C.... AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 129659 29 86.2 0 ........C....C..A...........G | T [129685] ========== ====== ====== ====== ============================= ======================================= ================== 34 29 99.4 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCAGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGAGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAAAAAACACTAGTATTTTCAGTGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACTGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAATATGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 139497-140627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHN010000003.1 Listeria seeligeri strain FSL W9-1330 NODE_3_length_413284_cov_82.328668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 139497 29 100.0 36 ............................. ATATTCAAGGGCTTTTGGAGTAGTTACTTTGGTGAT 139562 29 100.0 36 ............................. ACAATAACAATTTGATTTTCATAATCATGTTTTTCG 139627 29 100.0 37 ............................. CTATTTGCCCTTTATAGTTCAAGTATCAAAGATAAGT 139693 29 100.0 34 ............................. GAATAAAGTCCTACTTTGACCCCAGTTTGACCTT 139756 29 100.0 35 ............................. GCCATAGGAGCGCCTACAATAGCATCGGTAAGAGT 139820 29 100.0 36 ............................. CTTTTTTTAAAACATAGATAACCTTCGTCGGAAATT 139885 29 100.0 34 ............................. AGAAAGTTGTCGGCTGCGTTCATAACCTCACGAT 139948 29 100.0 37 ............................. ATGTTTTCTAGGAATCACCTTTGTATTATGAGATTTT 140014 29 100.0 37 ............................. AAATGTTCAGCTAATTCGTTGTTTGTTGCCGTAGGAT 140080 29 100.0 35 ............................. TAGGTATATTCCCGAACGTCACGATTCATTTCTTT 140144 29 100.0 36 ............................. AAAGGTGGCGATTTTCTAGGCATGTGTTCCGACGAT 140209 29 100.0 36 ............................. TATTCAACTGAATCAGGACCTTTTTTTGCTCCATCG 140274 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 140340 29 100.0 35 ............................. ACAGACGGCAATGAATTTCAAGAACGATTTTTAAA 140404 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 140469 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 140534 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 140599 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 18 29 97.1 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTTGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGGAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //