Array 1 1232-616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOS010000086.1 Trichocoleus sp. FACHB-69 contig86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1231 37 97.3 38 ........................A............ AATTTTCCTTAACAGGCTTTATTCTTCTGGCGTTGCCG 1156 37 97.3 38 ........................A............ TTCTGCATTTCCTCAAAGGTGTTTTCCAAGGTTTTAAA 1081 37 97.3 37 ........................A............ GAAGGTTAGCCAGACCGAGACAGGGACTCCGGTTTGG 1007 37 100.0 32 ..................................... TATGTCTCCTACCGCAATGGCAACAAACAGAA 938 37 94.6 34 AG................................... ATATTAAGCCAGTCAAGATGCTGAAGTTATTTGC 867 37 97.3 34 ..................G.................. CGCCATCCCCTGAATAAGGAGAGTCCCATGAATC 796 37 100.0 38 ..................................... GTCAGTTACGAGCGATAGCAACATTGAAGTTCGTTTTC 721 37 100.0 32 ..................................... TATGATGAATCGCGAATCGCCGCCCCTGGTGG 652 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 98.2 36 GTTTCAACGACCATCCCCACTAGGGGTGGGTTGAAAG # Left flank : AAGAATTAGCGATCGCTGCCTATCATGCCCGCCGCAATGTTTGATTGACAACCCCACCCGAACCTTGATAATAGAATAGAGCAATAGCGCCGCAGCTCATGCTTTCATTAGCCGCTGAGTTGTGAAAAATTTGGGTTAGTTTGACTATTGAAAGATAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCCCGAAGCTGCTATCCCTTGAGGATAGGAATCAGGTGCGCTCCCAGTAATAAGGGTGTGGGTTTACCGCAGTGGTGGCTATCGAATCACCTCCGAGCAAGGAGGAATCCACTTTAATTCTTTTTTTGACGGGTCAAAGCGGGTGCAAAAATCCCAGTGAGCCGTCAAAAGCTTAAAAACCTTGTCTAGTATTGACTTCAGGAATTTCGGCAACCAACAATTTTCTATTTTTAGGGAGATTGAGCAGGAATTTTCGGGAGCCGTCAAAAATGCTCCCAAAAGGCAGCACGGATAAGGAGTCTAGGTGGGAAGA # Right flank : CTCCCTTCCATGTCTGAGGCTCAAAATTTTAGGGTGGATTGAAAGGCGCACATCCCTCACACTATCTAGATAGATAGTTCCTGCAACAATGACATTAATTTGTCACTGCTACTTCAGGAACCTTTATGTGTCTCAACGACACATAATTCGTCACCACGACAGCAATCTGGTAGCAATGGCAATTAATCAGTCATCGTACAACAGTGACACTAATTTGTTATCAGTGACACTAATTTGTTATCAGTGACAAATAATTTGTTAATGTACAAATATATGGGCGATACTGGATTTGAACCAGTGACCCCATCCGTGTGAAGGATGTGCGCTACCACTGTGCTAATCGCCCGATCTTTCCAAGTATATCACAGGCATTCACAGCCAACAACCATTATTAATTTTGAAGTCTCTGAGCAATGTTCAATTAACCTAGTTTTCATGGGGTATATGAACATCAAGGAGAAGCAATGCCTGAAAATAGTGGAATAAATATTAATAGTGGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCCACTAGGGGTGGGTTGAAAG # Alternate repeat : GTTTCAACGACCATCCCCACTAGGAGTGGGTTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.20,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 41427-43242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOS010000121.1 Trichocoleus sp. FACHB-69 contig121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 41427 37 75.7 34 .T...........................CAAAGTTA GCGGGACTAGGGGAAGGCGATGGATTAGGAGAAG 41498 35 81.1 35 .T...........................--CA..GT TAGTTTTTATTAAGATTTTCAAAAAGCCAATCATA 41568 35 81.1 36 .T...........................--CA..GT TAGCTCCACCTTTGCGAATTTGAGCAAGGTCAGCTC 41639 37 94.6 30 .T..................................T AAAATTACAGAATCTTCTATCGATAAAATA 41711 37 83.8 43 TT............................G.T.GT. TGCCCCGGCAAAATCACCCCGTTTGCCGCATCGCCGCACTTGA CAA [41740] 41794 35 81.1 35 .T...........................--CA..GT TAGTTATCTAAGTTACGCTGAAATAATGCAAACTG 41864 37 91.9 29 AT................................G.. ATTAAGATCGTCAACGCCAACGACTTCAG CAA,G,A,C [41891,41895,41898,41900] 41936 37 81.1 19 TT...........................G..AG.GG AAAGTAATAGACAACTCTT CAAA [41965] Deletion [41992] 41996 37 100.0 34 ..................................... ATGGGAGCGCACATTTGACGCTCGATTCCCCAGA 42067 37 100.0 35 ..................................... CCAACCCAGTAAAAAAACGGTTGGAGAAATTAGGT 42139 37 100.0 35 ..................................... TCTCTTCAATCATCTAAATCCTCCATTTCAAAAAA 42211 37 100.0 32 ..................................... ACCTAAATGACTTTATAGAGACAGCACCTTGA 42280 37 100.0 38 ..................................... GTTGAATTTCGGGAGGTACTGATTCAAACCGCATCGGC 42355 37 100.0 30 ..................................... TCCCAGACAAACACGCCGCTAACACCGGAA 42422 37 100.0 34 ..................................... CGCGCCAAGGTTGGCAGCATTGTTAGCTATTTCG 42493 37 100.0 33 ..................................... GATTGAGCGCACATAAGCCCATAGCCGCGCCGC 42563 37 97.3 33 .T................................... CTATAATGAGAAAAAACAACAATAGATAATGCC 42633 37 94.6 35 TT................................... TATTAGCTTCAACATTATTCAAAGGAACCTGACCA 42705 37 97.3 34 .T................................... GCTTTAGTAACACCATATTGGGCAGCCAAATCTG 42776 37 97.3 36 .T................................... ACAGCGCTCCGGCGAGAAATACCCACCGCAACCTAA 42849 37 100.0 34 ..................................... AAACCTAAGTTGCTCCGATGATGGAGCGACTCAT 42920 37 100.0 35 ..................................... GAGGTTAGGATATCTATTTTTCCTGCTAAAGTTAC 42992 37 100.0 33 ..................................... ATACCCGGATTGGGTGCTAGACGAAACGTTCTG 43062 37 100.0 34 ..................................... CGCCTCATCTCGGAAGCGGCCGCCGAAATCTACG 43133 37 100.0 36 ..................................... CTAAAAATCTTAGAGTATAGTAGAAAACCTTTATAA 43206 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 26 37 94.5 34 GCCGGAAAACCTCTAAATCCCTATCAGGGATTGAAAC # Left flank : TGGTTTGGAATACTACCAAAGTTTTGCCCCAAGAAAAGTTTCCTGGGCTGCTTCTTAATGCTTTATTTGGTTATACAGATAGGCTTTATCGGGTGCAAGCGATCGCTTACGTTCTTTTTTTAGTCAGCATCGGCGGCATTTATTTGAACAGTTTAAAAGGTCGCCCCAAGGTGGCAGCAGCCCAAGATAAATCAGTCCAAAACACAATCAGTTCCGGACAGGAATAAACTGTTGGTTTTTTGTTCGCTGCTTGCGTCAACCTATAGGTGTTTTTTGAAGGGGTCAATTTTTGCGGCTGAAACACTTATCCCGCTTGGATTTGAGCAAGATGACACCATTCCAGGGATTGGCCCAAACGCTGTAATTCATACTGTGCCTTGCTTTGAGGCGGTTTATGAAAATGCAATCTTGACATCCTGGTGCTTGAAACAGTACATTCACTTTAGGTTGACGTAAACGAACCTCGAAAACTCCATATATCAATGTTTCCAGAACCCGGC # Right flank : CCTCTATTCTCCGACCTCGCGATGGAAACGATAGGGATGCTCATCCGGTAGCGTGTAAAATTAGCAATCGGAAATTTTAGGAATCAGTGCCAACATCTTCTCAAATTCCCAAATTGACGGTAAGTTGACATTGCGGGGGATGGGATGAGACTTTGGCATGAATGCAAATCAAGATTTAATCAGAGCAGCTAAAAAGGGCGACATCAAACGGATACAAGCATTACTCCACCAAGGCGCTGATGTCAATACCACTGATAGAGAAGGCACCACTGCTTTAATGTTTGCCGCCCAAAACGGCAACACCGAAATCGTGCGTGTGTTGCTAGACAAAGGCGCTAATATCAACCTTGCCAGAAAACAGTATGGTCTGACAACCTTGATGTTAGCAGCGGCAGCAAATCAGCTTGACGTGGTGCAAACTTTGGTGGCTAGAGGCGCTGACACGAACGCCAAAAACGAAGATGGGAGTACGGCGCTAATGGTAGCGGCGTTTAAAGGTC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAAACCTCTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [40-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 2963-2764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOS010000013.1 Trichocoleus sp. FACHB-69 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 2962 37 97.3 46 .............G....................... AGCCGCTGATCCACAAAGCCAGCGAAGCGCCAATTAGGAGGAGCAG 2879 37 97.3 42 ..................T.................. TACAAGTCCCGGAATTACTTCAAGCCAAATAAAAGGAGAAAG 2800 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 3 37 98.2 44 GTTTAAACTAAAGCGAATCTCCTTTGGAGATTGAAAC # Left flank : TCTTGGCAGTGTGATCTCCCAACACCCACCCTAAGATCCCCCTGTTTAAAGTGGTCAACTGCCGTCCAGAGCCAGATTTTGTTTTTTTTGAACCAACAAAGGTTTCCAACTCATCAAGTTCGCCCACTTCAGGAATACGTTCAGGCTCATAGGCATCGGGCAGATTTTTTCCCACTTGCTTGACCCAATAAATCACGGTGGTGTGATGGACACCTGTGACTCGCTCAATGCCTCGAAACCCCATGCCATTAACATACATTTTCAAACATAAAGCTTTGATCTCATCGGAATATCCTTGGGGAGCTGTGTAAACATCAATAAACTGACGACCACAATCTACACAAATGTGATGCCTGTTTACCTCGCATCTTACCGTTCTTACGGATATGATTGGAACCGCATTCAGGACATTGCATCAGATTTAGCCTCAATTCATAGCACCATTATGCAACGCCTTAAAACTGTCTTTTAGAAATTAAGGATTAACATTATGCAATGTT # Right flank : CAAACCTGATTCAAAGACCACGCGAGTGGGGAGGAAGGTTCTTAGCTTTTTACCCACGATGATGTGCTTCAGCACTTCCTGCTGAACCTGTAGCTTCTGGTTCTCCTCTGGCTGACTAGTTGCCACTCAAGCTGCGTGGGTTATGTTACCAATCTTGACATCACTACCAATGCTGTGGGTTGAAACACCTGCTTTTTCGTGTGGAGAGGCTCTGAAATAAAGCTTTTTGTCGGAGTGGATCTCTTACACACACTCTACAACTCTTTGTGCAAGAGAAGACCACCCCTCCCACCCTGGCCCTCGCGAAAAAATCACCATCCAAACAGGGGCATTTCCTACAGGAGAGGAATCAAGAGAGGGAGGGAGGCTATTAGATTTAACCCAGACGCCGTCCTTACGCCAGCCGACACGATCGGCAAATTCGGGCCATCGAATATTCAATCCGTTAGGGCTACCCATTTCCTGCCAAATTTGCTGCTGCACACTAAAGCCAAACTTAC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTAAAGCGAATCTCCTTTGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 50339-48581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOS010000027.1 Trichocoleus sp. FACHB-69 contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 50338 37 100.0 38 ..................................... GTTATGTAGGAAGTATTAGAACGGATGAGACTGGATTA 50263 37 100.0 34 ..................................... GCCATTTCTCGGAACTGAGCAGAATGCTTTGATA 50192 37 100.0 34 ..................................... GATAGAAGCAAATGCAGAACTTGATAGACTTAAG 50121 37 100.0 34 ..................................... TATTAAATATCGTGGGAATCATTAACACAGTTGC 50050 37 100.0 35 ..................................... CTATCTTCTTCCCTTCATACTATCATGCCACTACT 49978 37 100.0 38 ..................................... GTGAGCAGCAATCTTAGCGAGAACTGCGTCGCTGATGT 49903 37 100.0 36 ..................................... GCAGAGCTTCGCACCCAAGAAGAGATAGATGCAATA 49830 37 100.0 35 ..................................... GCCTCCAGTAATTCTGGGTCAATCAAATCAATTGG 49758 37 100.0 35 ..................................... GTATGCAAAACGCAAAAATTAATGTTGCCGATAAT 49686 37 100.0 34 ..................................... TTTGGCCCACTGCCAGGCTTCCGACCCTGTCCAC 49615 37 100.0 34 ..................................... CAGAAAGTCATATCGATATTTGATGCCAAATTTT 49544 37 100.0 35 ..................................... GCCAGTATGGTGTATTGGCAGGCTTAACTCAAGCC 49472 37 100.0 33 ..................................... CCAGCAGCAAGCCGCCGATAGCGCCCGCCAGCA 49402 37 100.0 33 ..................................... AAAGAACACATCCGCATGGTTGCTATGCTGCAA 49332 37 100.0 33 ..................................... ACTCCCACCAGCAACGCCGAGGCGATTATTGCC 49262 37 100.0 34 ..................................... GCCAGCATATTGCCATCCTTAAACTCTCCAGCGA 49191 37 100.0 36 ..................................... GAGTGCGGAAAGTTGAATCGCATTCTGAGTTTCAGT 49118 37 100.0 35 ..................................... GATACCTGGCGCATCATTCCAAGATACGGGTCGGA 49046 37 100.0 34 ..................................... TATGGAAACTGCTAGAGCAAATAGCTTTGGATGT 48975 37 100.0 34 ..................................... AAACTCAATAGATGCTGTCACCTTGCCATCATCG 48904 37 100.0 32 ..................................... AAAAAGGTAAGTCCCTCAAGAATAATTCTTCT 48835 37 97.3 34 ....................T................ ATACAAGAAAAAAGATTTAGCTTTTCCCTTGAAA 48764 37 100.0 37 ..................................... ATTAGCGAAACGCCAGATATTGACAAAGCTCATGACT 48690 37 100.0 32 ..................................... ACGAGCAACTTAGCGATCGCTAAAATTGTGTA 48621 37 81.1 0 .C..................GG.CT..CC........ | TTAA [48600] ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 99.1 35 GTCGGAAAACTCTATAATCCCTATCAGGGATTGAAAC # Left flank : GGACAGTCGGCGCACTAAGATTCATAAGATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTGTTTGAGTGCGACTTGACTACTACGCAGTATGCTAAATTGCGATCGCGTCTGGCGAAGATGATTAAGCCAGAGCAAGACAGCATTCGCTTTTATTTCCTCTGTGGTTGCTGTCAGCCGAAGATTGAGCGCATCGGTGGCGAAATTCCAATGGATACTACTGTGTTTTTTGCTTGATGCTTGCGTCAACCAGTAGGTGTTTTTTTGAGGGGTTCGATTTTTTTGGCTCAAACGTTTATCTCGTCTAGATTTGAATGCGATCGCTCCCTATCAGAGGTTGACGCAAGCAAGCCCTGTAACCGTTACTAGAAGCGGTTTTGAGGAAATTTTGAAAATTCAGCGTTTGACAAGCCGATCTCTGAAATGGTACATTGACTCTAGATTTACGCAAACCAACCTTGAAAACTACATATATCAAGGCTTTCATACCCCGGCG # Right flank : TTGATTTCAATTCACATCTTGGACTATTCTCAATAAGTTCCAAAGTCCGCCAGAGATTTTAAATAACTATCACCAAGTATTTTAAAAGGTGCGATCGCATTTTCAGCTAATCGCACCTTCTGGACTATTCCACTGTCACCGATTTTGCCAAATTCCTTGGCTGATCCACATCCAAACCGCGACGCGCTGCAATGTGATAAGCCAATAACTGCAACGGAATCACCGTCAAAATCGGCGAAAGCAACTCTTCCACAGCCGGAACAGGTAACAAATCGTCAAACGTTTCCGCCGCCTCCGGGTCATTCATCGGTGTCACACCAATCAAACGGGAATCCCGCGCCTTAGCTTCTTGGGCGTTTGAGAGAACCTTTTCGTACACATTACCCGGCATAGCGATCGCCACCACAGGAACTTTAGCATCCAACAGCGCAATCGGCCCGTGCTTCATCTCCCCAGCCGGATAACCTTCCGCGTGGATATAGCTAATTTCCTTCAGTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAACTCTATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //