Array 1 181968-179807 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGZ01000004.1 Klebsiella pneumoniae strain VRES0196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181967 29 100.0 32 ............................. GCCGACATGCTGGGCGCGATCACAACGGTTAA 181906 29 100.0 32 ............................. GGCGCGGTGTGGTATTGGGTGAAACTGGACGA 181845 29 100.0 32 ............................. GCACTTTACCTTCGAGGTCGTTCCCTTCGAGG 181784 29 100.0 32 ............................. ATGTATGGATCGAGCCAGGCGCAACCACGAAC 181723 29 100.0 32 ............................. CCAGGGCTTTCGGACCGTCAGGAGCAAATCAA 181662 29 100.0 32 ............................. TAAACGGCACAAGCGGCACCTGCGGCCAGGTG 181601 29 100.0 32 ............................. CGTGTCGGTCATGGCGATGCTGGGCGGCGATA 181540 29 100.0 32 ............................. CGCCTGGGGGGATCGCGGTGAGTGATTCATTT 181479 29 100.0 32 ............................. CGCCTCAACAAATGCGACTTCATAGCCTGCTG 181418 29 100.0 32 ............................. GCTCGGTGTGGCCTAAATCAATTCGCGGATCC 181357 29 96.6 32 ............................C CTTGCATACGTGTTACCCTCCATAACCTCACA 181296 29 100.0 32 ............................. CGTCGCCTGGCCGTCTGGTAAGTCCGGTTTTA 181235 29 100.0 32 ............................. CAGATATCGGCACCGCGAGGTTCTGAGTCGTA 181174 29 100.0 32 ............................. AGATCGAATAGTCGTAGTTTGTTTTACGGCAG 181113 29 100.0 32 ............................. CTGGAACGGACCCTGAGCGCCTTTGGGGGAAA 181052 29 100.0 32 ............................. ATTTCTCCGGTTGCCCTGGGTTCCCGGGGCAT 180991 29 100.0 32 ............................. GTGCTGGCCTTGAGCTTTTCAGCAATACGTCC 180930 29 100.0 32 ............................. TGCAGACGCGGCACTTTTACCCACGCTTGAGC 180869 29 100.0 32 ............................. ATATTCCGAGCGTTGCCAGCCTGCTGCGCAAT 180808 29 100.0 32 ............................. GCGGCGGCGTTAGAGCGCGCGCCAGCGTTTTC 180747 29 100.0 32 ............................. ACGGCATCTGCGAAATTCATGTTGCTAAATAC 180686 29 100.0 32 ............................. GCTGCGTATAAAGGCTGCAGACCGGAGAGAGG 180625 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 180564 29 100.0 32 ............................. CGTTATTTTAAAAGCTGACGGCGAAGTGGTGG 180503 29 96.6 32 ............................A GCGCACCCGAACCATTACGGGGCTTGCCATTC 180442 29 100.0 32 ............................. GCCGAGTTCGTCAATGCTATGAATTTTATAAC 180381 29 100.0 32 ............................. CCGGACAACGCGGTCAGTACAGATTTCATTGG 180320 29 100.0 32 ............................. GGCAGCGAGGCGCAGATCCCGCAGCTTTACCA 180259 29 100.0 32 ............................. TTCGGCCAATAACCGACTATGTGAGGGACTTT 180198 29 100.0 32 ............................. CCCGATAAATTCACTCTGTGTCATACGGTGAT 180137 29 100.0 32 ............................. GCATCGACGCCCGTATCGTTATCGACAAAATA 180076 29 100.0 32 ............................. ACACGTCGTTAGGTGTTCCGTACTGGGAGAAA 180015 29 100.0 32 ............................. CCAGGCGACCGTATCTGGGTGCGTGAAACGTG 179954 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 179893 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 179835 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGTGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 71674-71946 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGZ01000011.1 Klebsiella pneumoniae strain VRES0196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71674 29 100.0 32 ............................. AGTAGCGCGTCAGCATCTCCAGGTCGTCCTTA 71735 29 100.0 32 ............................. GAGTACACGGAGGTGAAGCAATGATTACCGGT 71796 29 96.6 31 ............................A ATAGAAAAACTGGCCGAATATGAGCAGCCAC 71856 29 100.0 32 ............................. GATTTTAGCGGATACACCAAAACTCGCCAAAA 71917 29 100.0 0 ............................. | T [71944] ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTTCCCCTGCGTGCGGGGGTTATCGG # Left flank : GGGGGGCGGCGATCAGGTTTTTACTCAAAATGGGTTTTACGGTCGGCCTTGTAGGGCATCCCGCTGTAGGTAAGTCATACCTGCTCGCCCGGACATTGCCAGAAGGTTTTATTGACGGTCGAGAACTGGTGGCGAAGAACAACTGGGAAACGCCGGTGCCATTCCCTTCCGACAAGATCCCGTCCGGGCCTGTAGGCATTGATGACGGAAATGTGTTCGGGAATGAAGCTTTGTTATCGGCAGCGGCGACCCTGAAAAAATGCGGCGTTGTGTTTACTGCTCAACGCCTGAAAAATGCAGAGAGCCTCGCGACAAGTTTAATGGCGCGGCGTGTGCTGATTTTTTATATCGGTGAGTATGAGTATTTTAAGTTTGAAGTTGCGGCACACTATGATCGGCGCAGGAAATCCTGAACCTGCGGAGGTGATTTTTACGCCTCAGAATCTGGTGGAAAATGAATGAATAGAATTTGCATTTGTAATCAATAGTATATAGTTAGA # Right flank : GGCTATATCGAACGCGTAACTGGGAAGTGATATTCAGAAGAAAACATTCGCTCGCAAAATACCTATAGCTAAAACCGGTTCGCCGGTTTTTTTTTGTGCCTGCGGTATTCGGCATATCTTTTGCGGGAAGGATAATAGATTCCTGCGAAACTATTTGAATAAGGTGACAATAATGGCTCAGGTTCAGAGAGGTAAAACGGTTCCCGTTCGGCCATCAGCGACGTATTTCAGCTATAGCCCCGACGACGGGTATGAGGAGCATGACTCCCCGGAGAAGGCAAAAGCTGCGGCAGACGCTGCAATTCATGCTTATCGGGGTGAAGCATGTGATGGCTGGCCTGATGAAGTGACCGGCGTTACGTGGGGTGTGGTGGCACAACGAGCGGCAAAGTTTGGCGAGCGTAAGCGCACTAATGAAGACGCGCATCTTTCTCCAGAAATTCAAACGGTCTGTGACTACTATCTTGCGCCGGAAGTGACCGTACCAGCCTCACTCCCCT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 109057-109571 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGZ01000011.1 Klebsiella pneumoniae strain VRES0196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 109057 28 100.0 33 ............................ GCTTTGTTAATCTTCAGGAGCCTGGCAGCCTGA 109118 26 89.3 38 ...........--...T........... GGCCAGACGCCCAACGCACTCTCGCCAGCTAAGCCTCA 109182 26 89.3 33 ...........--...T........... GGGAACAACGGACTGAGAATAACGCATAATGGC 109241 28 96.4 33 ....G....................... GTTCCTGTTTGGTTTCTCGATTATTTCCACCTT 109302 26 82.1 33 ...........--..TT.........T. GCTTGTCCGCAATCCGGCGTTTCATCGCCGTTA 109361 28 89.3 33 ..........G..T...A.......... AGGATGGATGTCCTGCGAAATTACAGCGTGACA 109422 28 96.4 33 ............T............... ATAGCAATGAACTGTATCACGATTGCCACCAAA 109483 28 100.0 33 ............................ GAGCTGCATAGTTATATCCTGTGTTATTAACTA 109544 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 9 28 93.6 34 GTGTTTCCCCTGCGTGCGGGGGTTATCG # Left flank : TAAAGACACAAAGGCGGATTTGCAGAAAAAAGTTAACGAACTGGATGAAAAAATTCAGTCTCGTAAGGATGAAAAATCCGAAGCCCGTGAGTCCATTCGTCGTCCTATTGACCCCTATGAAGCATTCATTGCCGGGGCTGAACTGAATCACCGAATGAGCATTAAAAATGCCACTGACGAAGAAGCTGGCCTGTTTATCTCTGCGCTTGTTCGTTTCGCTTCTGAACCACGTCTCGGCAGTCATGCGAATCACAACTGCGGGCTGGTGGAAGCAAACTGGAGCGTCACGACATGGAAGCCGGGTGAACTCACGCCAGTCACCCTCGGCGAGATCAGTATTAGCCCTAGCGGTGTAAAAATCGAAGGTGAAGAGCTGTCCGCTATGGTCGCTGCTTTTGCAAAGGCAGATGGATTTGATTTTAAAGCCCGGTGATGCATAATTTCTCGGTAGGAAAAATATGAACTATTTTTCCTATTTATATCAATGCAATATGATTAGA # Right flank : GGCATTTTACGCGATGGTTGAAGAAGCTTGTTGAATGTTTCCCCTGCGTGGGGTTATCGAGAGACGCAAACACGGCACTACAGCAACGAGAGGTATTTTCCCTTCTTCGCGGGGTTAACGATGTTGTGGGCGAAGGAATATGCCATCAATAGCATTCCCCTTCTGGGGGTTAACGGGCCGTAAGAAATGCAAGTATTGATACATCCCCTTTTTTGGGGTAAACGCATGGTAAAAATGAATAGGATTTTTTAGCGAGAAAATCAGAATAGGATTTAGCAAAACAGTTTTATTGCTACAAATACCCTTGTTGGTTAAAATACATACTGTATAAACCAACAGGGGTATCCGTTATGGATTTAAGAAAGACATTTGAACAACTTACCGACGAACTGCTTGCGCTGAAAAAGTTGATCAGCGAAAGCTCGCCGTTGTTTGCTCGTGTCTCGGTAATCCCCCCGGTTTTGCGCGGCGCGGAGAATGAGCCTGTTAATGAGATTGTT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGCGGGGGTTATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //