Array 1 3539238-3537951 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_021040.1 Roseburia intestinalis M50/1, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   3539237	    36	  86.1	    29	T..C.G...T...C......................	CGCTAGGATGTGATCTTGATACCGTGATT 	A,T [3539222,3539227]
   3539170	    36	 100.0	    30	....................................	AAACGGTATTTTCTTAAGTATAAACATGAT	
   3539104	    36	 100.0	    30	....................................	CTTCGACTTTGCCGCTTACTCTGCTGGTGT	
   3539038	    36	 100.0	    30	....................................	CCGGACACGATGAACGCCGGACACAATGCA	
   3538972	    36	 100.0	    30	....................................	CCATCAATTTTTCTTCTGTATCATCATCCG	
   3538906	    36	 100.0	    30	....................................	GGTATCTCCGTAAATATAAACGGTTGTAAG	
   3538840	    36	 100.0	    29	....................................	TGATAGATTGAACCCTCAACAAGTCTAGT 	
   3538775	    36	 100.0	    30	....................................	AAGCAACACGGATAGGGGTTTGTCGCACTT	
   3538709	    36	 100.0	    30	....................................	CATGGCAATTTTGTTTATTACATCACGATA	
   3538643	    36	 100.0	    30	....................................	ACAATGAATTGAATTTTTCAATGGCTGATC	
   3538577	    36	 100.0	    30	....................................	TAGCGATCATAACACCATTAGCCATTAAAT	
   3538511	    36	 100.0	    30	....................................	CCGCCGCACTCATAGGCTTTTGAAATGTGC	
   3538445	    36	 100.0	    30	....................................	CAAACTGTAAAATCTTTGTTTTCTACAAGT	
   3538379	    36	 100.0	    30	....................................	ACAGCATTGATATCCATTGATAAATTAGAT	
   3538313	    36	 100.0	    30	....................................	ATAAACAAGCCATAATTAGGTTTGCTTTCC	
   3538247	    36	 100.0	    29	....................................	GAAAAAATTTTTTGGAAAAACTATTACAG 	
   3538182	    36	 100.0	    29	....................................	AAATGACGGTTTTCAGTATGCATTTATTT 	
   3538117	    36	 100.0	    30	....................................	TCTTGCTGCAAGATACCAGACTCACGGTAA	
   3538051	    36	 100.0	    29	....................................	TATATGATAGATCAGGCCGAGGCCGCTAT 	
   3537986	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        20	    36	  99.3	    30	GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT	                              	       

# Left flank :   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCGCCGTAGATCCGCACTCACATTTCTATTTCGGTATCCAAAATTTCTGTTAAATTTTTCTGTTAAATTTTTTCAAAAAATTGTTGACAAATTACTTTTCCCATAGTATGATATCAAATGTGTCTGGCAGACAGATACAAAACAATTTACATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTTAAAAGCTACAATACAATTTCATATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGTCGCGGGTTCGAGTCCCGTCTCGCGCTCTTCTGTTGAGAAACAGGAAACTTTGATTTACAAGGTTTCCTGTTTTTTGTTGTAGTGTAAAGCTTGATTACGGTTTTTCCGTAATTTCAATATACT
# Right flank :  AGGGAGCACAAATCCCCACGAACTACAGGGATTCGTGGGGATTTCATCTAAAAAAAAATCTTTAATTTGGAAATTAAATTCTATCGAAAATCTTCTTTTTTCAAAAAACATCCATTAATTCTATCGATTCAGGGGTATCCTCAAATGTTTTTGTTCCCAACATGACTTCCATAGATTCATACTGCTTTTCTGTTAAAACCAATGCACGTACAGATCCTTTTATAGGCAGATTTTGTTTTAAACGCTGCTTATGCATCGCAACTGCATCCATCCCATTGCATATTCTGGAATATACAGACCACTGCACCATATTGTAGCCATCTTTCAATAAAAATTTACGAAATTTCGCGGCATCCTTTTTCTCTTTTGCAGTTACTACCGGCAGATCAAAAAACACTAACATTCTCATAAACTTATTCATAGCTATGTACCTGTAATTGCATCAGTTCCGGCAACTCCAAATCTGATCTTTTTCCCTGCAGAGCACTACTGTAACTTGC

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.30,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.78,4.77   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//