Array 1 104219-103518 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJMQ01000010.1 Escherichia coli strain MOD1-EC293 MOD1-EC293_10_length_165149_cov_49.6175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 104218 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 104157 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 104096 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 104035 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 103974 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 103913 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 103852 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 103791 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 103730 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 103668 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 103607 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 103546 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACTGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121335-119720 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJMQ01000010.1 Escherichia coli strain MOD1-EC293 MOD1-EC293_10_length_165149_cov_49.6175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121334 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 121273 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 121212 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 121151 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 121090 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 121029 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 120968 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 120907 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 120846 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 120785 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 120724 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 120663 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 120602 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 120541 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 120480 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 120419 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 120358 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 120297 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 120236 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 120175 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 120114 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 120053 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 119992 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 119931 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 119870 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 119809 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 119748 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //