Array 1 123690-125662 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRH01000003.1 Marichromatium gracile strain DSM 203 scaffold0003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 123690 32 100.0 34 ................................ ACGAGCTGTATCAGCGACGCGCGCCGGATGATCT 123756 32 100.0 35 ................................ CGGCAACGCTCATCACTCTGGAAGCAATAGCCCCC 123823 32 100.0 36 ................................ ACTATGGTGGATAATGCAATGATCACCATGACACCA 123891 32 100.0 35 ................................ ACCCGGCAGAATTGAGCGCCCCTCAGGCGCAGCCG 123958 32 100.0 35 ................................ CACCATTACGAGACCCTGATTATCGAGTATGCCAT 124025 32 100.0 35 ................................ GCGTGCATCGTCGTCGGCGACGTGCGGGACAAGCG 124092 32 100.0 34 ................................ GAGATCGACGTCGGCCAGTTGCAGCATTCCGGCC 124158 32 100.0 35 ................................ ACCGTGCCCGTGGATGAAACGGTCGCGATCGGCCT 124225 32 100.0 36 ................................ CGAGCGTCTGACGGCGCATGCCTCGATCAGTGTAGC 124293 32 100.0 34 ................................ AATTAACCCCGGTGAGCGTCGTGCGTTGAAGCAT 124359 32 100.0 36 ................................ TACGGGGCGCTGGAGACCAGCCCCGCCCGCCACGTC 124427 32 100.0 35 ................................ TGCGAGATCGCGGCCAGCGCTGTGGCCACCGGCTG 124494 32 100.0 35 ................................ CTCTCGTCGTCGTCGGATAGCAGCTCGCGCAGGAC 124561 32 100.0 35 ................................ GATTACTCGTGGCGCATGCCGCGCATCGACCGCCT 124628 32 100.0 35 ................................ CCGAATGGGCACGAGACCAGCGCCGAGGCAATCGC 124695 32 100.0 34 ................................ GCCGGTGCGGCGCCCGGCGGCATCCCGGGAATGG 124761 32 100.0 35 ................................ CGACGAACTGCTCGGGCAGAGCGCCGAGCCAGGAC 124828 32 100.0 34 ................................ GCCAGTTGCGGGTGGCCGTGGTTGGCGGTGGCGG 124894 32 100.0 36 ................................ GACGAAATTCCCCACCTCGATGGCGGTGGCGGTGGC 124962 32 100.0 34 ................................ CTTACTCACGGTCGCGAGGAAGTGCTCGCGGTGC 125028 32 100.0 35 ................................ GCTTAGCCCGCCGCCACCACCACCGCCAATTCCGC 125095 32 100.0 34 ................................ ATTGGGGCGTATTGCCTGCGGTGCCTGAATCAGA 125161 32 100.0 34 ................................ AATGCCACTGGCGAATACGAAGCTGATAGTTACC 125227 32 100.0 35 ................................ ATCGAAGCGCAAGAGAATTTTCTGGCTTCGCCCCG 125294 32 100.0 34 ................................ GTCGATCTCGCCCTCGGCTCGACCCAGGAAGGCG 125360 32 100.0 37 ................................ GCGACGAGAGGGAGTTGCAAGTGATCCGACAGCTACG 125429 32 100.0 35 ................................ AGACCTGGTGCCGAAGGCTTCCAGGATGCCGGCCA 125496 32 100.0 35 ................................ CTTATCCGCCGACTGCCATTCGTGGGCTGACGCGA 125563 32 100.0 36 ................................ ACCCATTGAACTGGCGCCCTGGGCGCTGTGAGGAGG 125631 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 30 32 100.0 35 GTCGCGCCCAATACGGGCGCGTGGATTGAAAC # Left flank : GCCCTGTCTGTGGAGGTGAATCCACCATGATGGTGTTGGTCAGCTACGACGTCAGTACACGTGAACCGGAAGGGCCGAAGCGGCTGCGGCAGGTGGCCAAGGCATGCCTCGATTATGGGCAGCGTGTTCAGTTCTCGGTCTTCGAGATCGAGGTCGAGCCGGGGCAGTGGGCCCTGCTCAAACAACGGCTGCTGGATCTGATCGACCCACAGCAGGACAGCCTGCGTTTCTACTACCTCGGCAAGCACTGGCAACGCCGTGTCGAACACATCGGTGCAAAGGAGACGCTCGACCTTCATGGCCCCTTGATCCTCTAGCGGGAAAAACGCGAACTACAAGTGACCGGAAAATCCCCGGGAGGTTCGCAAGTTTTTATCTTTTTGATTTTTTTAGCCTTTTTGTCTTTGCTCGATCTCCGAACTTGGCTAATCGAAGATTTTTCGCCGGTTCGCGAAATTGGCTGAAGTGTCTTTTGCATTTCAGCGGGTTACGATAATGGA # Right flank : CTGGCTGCGCCACCTGATCGGTGCGCCGACGGGCGCGTGGATTGAAGCCGGGCGGTCAGTGTGGTTGATGTGTTGAGTGCGTGGGGCGCCTTAAACGGACGGCGCGAAACATGCCTATATGCCGAAAATCAGTAGGCGCTGCTGTTGGTTCGCAGTGCTCGCGGTGTTCGCGATGGACTGTGTGTTCCGCACCGCACAGCTAGTTGGTTTGGCGATCTGTCTCGTGCTCGTCTGCGACATACCGTCTGGATCCCTGCGGTGTCGGCGGAGTACCATCGGTCGCGCCCTTGCCGGAGCGGCGCGCGCGAGCGTGTCGGGACTGGGACTGCTCCGGGGTCTCTCCGTCGCGGCTGCGGCGGTCGCGCGTGACTCGCGGGGACCGGCTGCGGCTGGCGGGAGTGCCGCGATCTATCCTGAAGCCACCACCCCGACAAGCAGAGACCACATGCCTACGATCGGAACCCCTTTCTCCCCCAACGCGACCAAGGTCCTGCTTTGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCAATACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : NA // Array 1 52317-54031 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRH01000013.1 Marichromatium gracile strain DSM 203 scaffold0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 52317 37 100.0 36 ..................................... TAATAACTGGTGGTTTGGATGGTGGAGTATCCTGGT 52390 37 100.0 36 ..................................... TCTCAGGGGGATGGAGATGCGGCGATCACCCTGCAT 52463 37 100.0 35 ..................................... AGGTTCCCGAGTCGCTGCTGGGGGCGACCGAGCGG 52535 37 100.0 36 ..................................... ACAGGATCCCGCAATCCTGTAAAATACAAACCATCG 52608 37 100.0 36 ..................................... TGGAGCGGCGACTTGCGCTGGATCATGTGGTGTACC 52681 37 100.0 35 ..................................... AGAGCACCGGCTATGTCGTAGGCCCTGGATCTCTG 52753 37 100.0 35 ..................................... GAGGGCGTGATTGGGGCGGTCTTGTCGGCATACTC 52825 37 100.0 36 ..................................... ATTAGCGCCTGGGCGTTTGCGTGCATCGCGTGGTGT 52898 37 100.0 36 ..................................... CCATTGCTGGTGCTGGGGGGAACTCAGTGCTCCAAG 52971 37 100.0 36 ..................................... CCTCGGTAGAACCATGTCTCGGTGGTTCCTTGGCAC 53044 37 100.0 35 ..................................... CGGATCACGTAGGTCTTGTCGACTTTGCTGCGGAC 53116 37 100.0 36 ..................................... ATGATGTGGAGCACTTCCGTTTCGGATGAGTCGCGC 53189 37 100.0 36 ..................................... CGTCTGGCGCTTGTGCGTATCCGGTAAACCAGCCGC 53262 37 100.0 37 ..................................... CGCGCCAGGGTAAGCGCGGCCTCTTCGCGGCCCGCGG 53336 37 100.0 35 ..................................... CCGATGTCGGTGACCTTCAGCCCGGCGTCGCGGAG 53408 37 100.0 38 ..................................... ATGTGGACATGCTGCGCCTGCTGCGGGCGACCATGCGC 53483 37 100.0 36 ..................................... TCGGGTACATGCGGCTGGAGGTGTACACCACCGGGG 53556 37 100.0 37 ..................................... CGCCTCCGGGTATGTGACGAGCAGCAGCCAATCGGCT 53630 37 100.0 37 ..................................... CCGACCGCCTCCATCTTGGGATCGTCGATCCCGGCGC 53704 37 100.0 35 ..................................... TTGTCCGCGTAGGCGACCTCTACCGCGTAGACAGC 53776 37 100.0 35 ..................................... AGGCGGAACGGCGTGCTGCCGTCAGTCGCCGCGTG 53848 37 97.3 38 ....................................T GCGCGGATCGCCACCGAGGCGCGCTCGCGAATCCGGCG 53923 37 100.0 36 ..................................... GCAGGGATCGCTGCCGGGTAGAGATGGGCGAGCACG 53996 36 94.6 0 ..............C...-.................. | ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 99.7 36 GCCGCAATGCTCAATCCATTACAACAAGGATTGAAAC # Left flank : CCGCCAGGGTGCCCCAGGGGAAGTCACGCCCCAGCACCCGGTAGACGCCGGTCGAGATCCAGAAGCGCGACAACGCCCCGAGCGCGCCGCCCCCGGCGATCGCCACAAGTTGCAACACGGTATCTTCCCGCCAAAAGGGATAAGTCTACTATGGACGTCCGGGCCTTTGCCCGGGCGAACGCCCCGCCCACCCTGGCCACTGCCGCACATCCGAAGCGCACACACAGAGGACACCGATCGCACCGACTTGATATTATCGGGCCACGGCAATACCACTGCCCGCAGCGACCTCGACTCAGACTGCTGAGCAAAAAATATCACCGACCCTCAACGCCGCTGACGCAACCTTCTGATAAAAAAGACATAAAATCAAAAGCGTCAATGTCAGCCAGCGAGAAAACAGGGCATACATCGGTGCAAAACATCTATTTTTCGCCACCCAAGAGCCTCGGCAGAAAAGACCAAGTGCTTGTTTCAAAATGCTTTTTAGGGAATTTGCG # Right flank : CCTTGGATGCGCCAAACGCTGTTTTGTTGCGATGAGAGGGTGAGTAACGGGCAACTCAACCTGCGAGATGACATAGCGATGTAGGTTGGGTTGCTGTTTTTCAGCAACCCAACATCGGTCGATGGCGCCAGCACCAGCCAGATCGATCTCAATACATCGAGTCAGCAGTGTTCGAGCAATACGCTGAAATCCCCCGCCAGATAACCCTCACGCACCGTCATGGTCGCATTCAAGGTATCAGCGAGCTGTTGGATCTCGGCGGGCCGGCGACAGTTGTAGATCAGCGAGGTGTCGCGTCCCTTGAGCAGGTTGAATACGAAACCGCGACGGCTGGCGGCGAGACAGTTGCGGATGAAGCTCTGGGTCTCATCCCAGGTGAGGATGTTCATGGCGCCGCTGCAGACGTAGTAATCGGCCTCGGGCAGCGGATCCTGGAGCACGTCGCACTGGCGGATCTCGCAGCCGGTGCGCGCGCGCGCCGTCTCGATCATCGGCGCCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGCTCAATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 13813-15488 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRH01000027.1 Marichromatium gracile strain DSM 203 scaffold0027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13813 29 100.0 32 ............................. TGGCAGGACCATCATAGAGATCGACCGTGATG 13874 29 96.6 32 ............................G CTTGCCCACTTGCGCTCCCATTTACGGACGGC 13935 29 100.0 32 ............................. TTGGCGGCAACCCCAGCGAAATCGAATCGCTC 13996 29 100.0 32 ............................. GGGAAGGTCACGCGCGTTGCAGTCACACCATT 14057 29 100.0 32 ............................. CGATCTGCCTTCTTGACCCATTCGACTCGAAC 14118 29 100.0 32 ............................. TCGATCTCGTTCAATTTCAGGCGCAACTAGGA 14179 29 100.0 32 ............................. AGCGCCGGAATGCGGGAGATGAAATCAGGCGC 14240 29 100.0 32 ............................. TGTGAGTGTCCCGAGGCCCAGCCCTGGAATGA 14301 29 100.0 32 ............................. CGATACCCGCACTCGGCCTTGAGGATCTTCTT 14362 29 96.6 32 ............................T GTGACGACTTATGCGCGGTTGGTGCGCGAGGC 14423 29 100.0 32 ............................. GGGGTGCGGGTCAGGGTCATCGATTCGAATGG 14484 29 100.0 32 ............................. AGGTGGCGACACGGGCGGCGACACAGGTGGCG 14545 29 100.0 32 ............................. GGCTGGGGCTGCCGCTGCTACGTCGAGAGCCT 14606 29 100.0 32 ............................. CGGGCCGGCTACACGACCGGCCGCACCGTCCA 14667 29 100.0 32 ............................. GCTGCACTCGTCGCCGGCCTTGAGGTCGGCGC 14728 29 100.0 32 ............................. TACGACACTGGCGCAATCAGCGTGACCTTCTC 14789 29 100.0 32 ............................. CGCGCATAGGTCGTCACGTTCGCCGCGCTCGG 14850 29 100.0 32 ............................. GTCGAATGGTCTGCTGCTCTTGCATCTGGATG 14911 29 100.0 32 ............................. CGTTTTACTTCCGTCTGTCAAGACGAGGCCGA 14972 29 100.0 32 ............................. AGGCTGGCGAAGTCGTGATCCGGTTTTGTGGC 15033 29 100.0 32 ............................. GTGCGGAACCCCAGGCCGTTGATGGCGTTGGT 15094 29 100.0 32 ............................. GTGAATACCCCGATCGAGATGGGTGGTCGTGC 15155 29 100.0 32 ............................. CCGAATGATGAAGGTTCCCCGCCAGTGGACCC 15216 29 100.0 32 ............................. TGGGCACCCGATGCGCGCGTGCAGCTCTGCCA 15277 29 100.0 32 ............................. GGAGTCGAACTGCGCCGCATCGACGATGGTCG 15338 29 100.0 32 ............................. GAGCGCTGGCCGCCGGCCTCGCGGTCGAATCC 15399 29 100.0 32 ............................. ACATCACCCGCCGCCCCCCGTCCGACTCCGGC 15460 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTTTCCCCCGCGCTCGCGGGGATAGGCCC # Left flank : GCCAAGAAGGCGGAAACCGACTCCCAGACAATCGATAGGCTCGTCAGGCGTGAAGCGGCTACCGTGTTCCGCAAACAGGGAGTCATTCCTATGATGATCGAGCGGATCAAACAAGTTATCCGCATGGAGGAAACCGATGCCTCTGGTCATGGTCGTGACTCGTGACGTAGCCGATCGGTATCGAGGGTTCCTGGGATCGCTAATGCTAGAGGTCGCTCCAACGGTCTACATTTCGCCACGAATGAACTCCGGAGTTCGCGTTAGAACCTGGAATGTTCTCAGCAATTGGCACAAGAGCGAACCACAAGGAAGCATCGTTATGGTTTGGCGCGATGTAAGCGCGACAGGTGGAATCGAGATCGCCACGCTCGGCACACCACCGAGGGAGCTAATCGACGTCGATGGCCTGTGGCTAGTGCGCAAATCATCGTAAAAAGGCTCTTTAAAAACAAAGCCCAATCACCGCTTTCGCAATTAATTACAAAGACTTAAGCAAAAGA # Right flank : TGAGGTTCCCCCGAGATTCGCCGCCTACTCGAAGCGTTGCTATGGCACGGACGCGCCCCGCCTGAAGTCATCATCGCCTAGCCTGATTGGCGATAAAGGCATAGGGCTCGTGCGAAAGCTTGCCACTATCGAGTACACGGAGTTGGACCACCGCGAACATGCGCGGCTGTAGCAGTAAGGGTTATGTCTCTCCCCATCGCTCACAGCCCCCCACCTGCCTCCACCCGCCCCGCCCGCAGCAGCGGTTCGAGCTGCTCGGCGGGGAGCGGGCGGCAATAGTAATAGCCCTGGGCGACGGTGCAGTGGTGGGCGAGCAGGAAGCGGCGCTGGGCCTCGGTCTCGACGCCCTCGGCGATGCGTTCGAGGCCGAGGTTCTCGCCGAGGCCGATGATCGCCTTGAGGATGGCGATGGCCTGACGGGGGAGTTCGGGACGCTCGTCGATCTCGGCGAGGAAGGAGCGGTCGATCTTCAGCGAGTTCACCGGCAGGCGGTTGAGATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCTCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 118705-119245 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRH01000005.1 Marichromatium gracile strain DSM 203 scaffold0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 118705 37 100.0 35 ..................................... CACTCATAGCGGGCGACCCCCATACTTGAAGATAT 118777 37 100.0 35 ..................................... TGTGCAGCGGATCACCAAGCGGAAGATTCCCATGG 118849 37 100.0 36 ..................................... CGTGGTGATTCGGTCATCCCCGGTGTCTTTCATGAT 118922 37 100.0 35 ..................................... CCTAGCGCCGTGCCTCGGCGATCAGTTCCTCGGTG 118994 37 100.0 35 ..................................... GTACTTTCTCACCAAAGCCCGGAACTTGGGGTCGT 119066 37 100.0 34 ..................................... TTGGTGCTGTAGAGGATCGCCGCGTTGTTGGTGA 119137 37 94.6 35 ......................G.....A........ CATTAGACCAGCGTCCAGAGTTACTCGCTGATCTT 119209 36 83.8 0 ............A.T......C........G.G.-.. | A [119237] ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 97.3 35 GTCCGAATCAGAGACCCGATCTAAAGGGGATTAAGAC # Left flank : CTGCACCGCTGGCTCATCCACGAGACCTGACCGACGATGGCTCGCAAGCAACTCTTCCTGCTCGCCTATGACATCGCCGATGACGGTCGGCGCAACCGAGTGCACCGCGAGGCCACCGACCTGGGCATCGCGCTGCAATATTCGGTCTTCCTGATCCCGGCGACGGTCGCCGAGATCGATCGGTTCGTTGTACTGATAGGAGGGATCATCGATCAGCGTGCAGACGATATCCGGGTTTACCCCCTGCCTTCCCGACTCGAGGTCTGGCGTCGAGGGCGTCAGTCGCTTCCCGCCGGCATGGCGTTGGAGATGGACGGTCCCTTGGGCGATGCCGTGAGCAGACTTGTCGGGAACCGTGAACTCGATTAAGTTAGAAGACGTTCGAGCCGCCTGTGGAGCCTTCGTCCCTTGCCCTTCTGCACGTCAACTTTTTCTGTCACGAAAAAATTGCGAACCACCCTTGTAGGTGGTTGTTCGGAAAGGCTTTCTGGCAACTGGCA # Right flank : CATCGGCGCAGTGATTGGTGGCACTCTTGCTCGGCTCAGCAACAATAAGAAGCCATAAAAAAACCCGCATCACGCGGGTTTTTTTATGGCTGTTCGGTTAATGATTTCAGATTTAATTTCTGGCTTCCTTTATCATCTCAAAAAATAAATTCATTATTGGCCGGTCGCGGCGGAATTCGAAGATGTCGCGGACATGGATATCAACGGGGGTGCCGTCATCATGATCGATACGAATGACGACCCCGTAGGGGGTTTCCTCCATGCTGATTCTCTCGTTGAAGAACGATTTTTTCAATTTTACGTGTGGAATGGATTTTGTCTTGCTGACTGGAATGTTGCCGTCCGAGAAAAGGAAGAATGAGCTGTTGTAATATTTATTTTCCTGATGATTGTTTGAGTGATCTTTTTTCATTTCGAATCCTTTTTTCTGCTCGTCGTTTTCGATGATTTGGTAATGATTCGATGTCCAAGCTTTTGACTTTGAAAACTTTTGTCTGAGT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATCAGAGACCCGATCTAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 6540-2360 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRH01000045.1 Marichromatium gracile strain DSM 203 scaffold0045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6539 29 100.0 32 ............................. CCACTATGTTCATCGCCGGCCAGGAATACAAG 6478 29 100.0 32 ............................. TCTTTAGGGCTTCAGCTCGTCGACAAGATCGG 6417 29 96.6 32 ............................A GCAGCAGCGTCGTGCCGCGTTGCTGGTCCCAG 6356 29 100.0 33 ............................. CACGGTCGGCGAAGAGGGCCAGGGGTCGCGTCA 6294 29 100.0 32 ............................. CCCTTCGCCGGCCCCTGCCAGGTCACCGTGGT 6233 29 100.0 32 ............................. CGCCTGCCCGACGGCGACACCATCAGCGGCGC 6172 29 100.0 32 ............................. CGTCTGTGCAGCAAGGCATCGCTTGAGACGCG 6111 29 100.0 32 ............................. TCCCGGCGGGTCATCGTCGATGGCGCCGCGCC 6050 29 100.0 32 ............................. CCGTCGAACGCGGTGTTGGGGCGCCCCGGGTT 5989 29 100.0 32 ............................. GCCAACTGTGCTTCGTCAAGTCTGCACTGCCC 5928 29 100.0 32 ............................. TCTCCGGCTCGATCACGCACCACTGAAACAGG 5867 29 100.0 32 ............................. ATCATGACGCCGGCCACACAGATGCACGAAGC 5806 29 100.0 32 ............................. TTTGTGTGCCTGGCCCATACGCGCGCACGGTC 5745 29 100.0 32 ............................. GCTATGCGCGCGCCCGTGCTGGTCCGCGTGAG 5684 29 100.0 32 ............................. GTCGAGGCATTCATCCTTGGTGATCTGGTAGA 5623 29 100.0 32 ............................. GCCTTGTTCGGCGCACTCCTGCTCGAGCGTGG 5562 29 100.0 32 ............................. GTAATCCATCGCTTCTGCTCTGGCGCGTAGTC 5501 29 100.0 32 ............................. TGCGTCCTGGCGGTCTGGTCTGCCTGATCGTC 5440 29 100.0 32 ............................. CAGGCCGTCGCCAACGGTCGACCAAGCGCCGG 5379 29 100.0 32 ............................. CAGTGCTTGAGCGGCGTCAACGTCCATGTCTG 5318 29 100.0 32 ............................. TCGAAAAGGTTGCCGAGCGCCTGGCGCGGTTG 5257 29 100.0 32 ............................. GCGCTATCTGGTGGTGTAACGCTTAAAACGCA 5196 29 100.0 32 ............................. TCCGTTGGCTCCGGTTTCCAGATGCGTCTACG 5135 29 100.0 33 ............................. GACTTTTCGGATTGGCCTTGCGCTGGTCGAAGA 5073 29 100.0 32 ............................. GCTTTGCGCGGCTTGGTGTAGAGCTTGCGTGC 5012 29 100.0 32 ............................. TAATACGGAAGTGATGCGAATGTAATGCGATG 4951 29 100.0 32 ............................. CTCGCGGGCGCGTGTCCATAGCCACGCATATC 4890 29 100.0 32 ............................. GCGCGCTCGCGAACTGCTTTGGGATACGCGCG 4829 29 100.0 32 ............................. GCCATGTCGAACTCGAGGGGGGTGTCGACGTC 4768 29 100.0 32 ............................. GCAGTTCTCCGCGCCGCGCCTTCGCCTTCGCG 4707 29 100.0 32 ............................. GCCTGGGCCGCAGAGCGCGAAGAGCAGATCAG 4646 29 100.0 32 ............................. GCCGGGACGCGGACGTGGCGCGGCTGCGAGAG 4585 29 100.0 32 ............................. GCGCGGACGGATCGGACAATCTCGACGACGGC 4524 29 100.0 32 ............................. GTCGAGCGCTTCACCGGGCTTCGCGTCGGCAG 4463 29 100.0 32 ............................. CAGCGAAAGGCGATCGAATAGGGTAGACATAG 4402 29 100.0 32 ............................. TCGTACAAGCGATTCTTGGCGAACTACGATGA 4341 29 100.0 32 ............................. ACATCCTTTGGCCCGATTTCAGCATGAAGGCT 4280 29 100.0 32 ............................. TCTCGCCCGAGCATGCGGCCTGTTTCCGCGTG 4219 29 100.0 32 ............................. GAGCACCACCAATGACCAACACCACATTCCGA 4158 29 100.0 32 ............................. TTGTCGATCAGCCGGGATCTTCTCGATCAGCC 4097 29 100.0 32 ............................. CGCGCACACGCACACGCGCCGCTCGCGCACGC 4036 29 100.0 32 ............................. ATGCCGTGCCGCCCTGCAATCTCGCGCAGGCT 3975 29 100.0 32 ............................. TTCGGTGCGGTCGGGGTGTTGCGTGTGCCGGT 3914 29 100.0 32 ............................. ATTGCGGCTGATCTGCTGATAGCCGAGCACCG 3853 29 100.0 32 ............................. AAAAAATGGCTGAGGCGTGGCCCGGTCGTGTG 3792 29 100.0 32 ............................. CTCGGCCAGGCGGCGGCGCGTCTTGGCCTCGT 3731 29 100.0 32 ............................. TTCGGTGCGGTCGGGGTGTTGCGTGTGCCGGT 3670 29 100.0 32 ............................. ATTGCGGCTGATCTGCTGATAGCCGAGCACCG 3609 29 100.0 32 ............................. CCTCGCTGACCCGGCGAGGCACAACCCACAAG 3548 29 100.0 32 ............................. TAATGGGCTTTCAGACTACCGTCATTGACGAT 3487 29 100.0 32 ............................. CAGGCTGGCAGACCTGGAGCGAGAGACACACA 3426 29 100.0 33 ............................. CGATGCTTTGTTGCACAGGCGTTTGCGACTCAT 3364 29 100.0 32 ............................. CCATAAACCACCAGGGGTGCACCCCGCACCCC 3303 29 100.0 32 ............................. CTCGAGGTTATCGAGGCCGATCGGCTCGAGAC 3242 29 100.0 32 ............................. GCATTCAACAAGCCGGGCGGGATGTCGTCGTC 3181 29 100.0 32 ............................. GCGTATAACGGCTATCCATACCTAGGATTTCA 3120 29 100.0 32 ............................. CAGGCCGGGCGGGATGTCGTCGTCCTCGCCGG 3059 29 100.0 32 ............................. TTCGCCGACGCACTCTATAGAGGGCCGCACAG 2998 29 100.0 32 ............................. GTCAAGCGGCGCTCTGGCCGCCCTTGCCCTCA 2937 29 100.0 32 ............................. GTGTTAGGCTTCCCTACATGAAAACGACCTGG 2876 29 100.0 32 ............................. CCGCAACTAATGCGCAACCGAGGGAGACCACC 2815 29 100.0 32 ............................. GGCGTCGATTTCCATTCGCCAGGAAGACTTGC 2754 29 100.0 32 ............................. ATCGACAGCTACCAGGGCGACGAATACGTGTC 2693 29 100.0 32 ............................. CCCTGGCATGGCTTCGAGCGCACTTCGACGCA 2632 29 100.0 32 ............................. TAACGACACGCTATTCCGTCCCTGGATCTCGA 2571 29 100.0 32 ............................. TGCGATGTCTACGGTCACGCACTTAATCCGCT 2510 29 100.0 32 ............................. AATAAACACACCGCAACCGTGATCGCGGCCAA 2449 29 100.0 32 ............................. ATGGCGGTGATGCGGCCGGTGACGTCGACGAA 2388 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================= ================== 69 29 99.9 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : AAGCTGATCCCGATGATCGAGGACGTCCTGGCCGCCGGCGAACTCGCGCCACCACCACCGGCGCCGGAAAACATCCCTCCAGCCATCCCCACCCCGGAAGGACTCGGTGATGCTGGTCATCGTCACTGAGAACATCCCACCCCGGCTGCGCGGACGGCTGGCGGTGTGGCTACTGGAGATCCGCGCCGGCGTCTATATCGGCACCCCCTCCAAGCGACTGCGCGAGTTCATCTGGGAGCAGCTCCTCGCCGGCGTCGAAGACGGCAACGCGGTCATGGCCTGGAGCACCAACACCGAGTCCGGCTACGACTTCCGCACCATCGGCGAGAACCGGCGCATCCCCGTCGATTTCGACGGACTCAGACTCGTCAGCTTCCTCCCCCCACCCCCATCGGACCCTTCACGATGATCGAAAAACCAACCCCTTCGATAGACCCCGAAAATCTGGTAGATTTAGAGGCGCGTATTTTTCTTCGCTGAATCATGCAAATACGCGAAGA # Right flank : AACATCCTCCCCTACTTGACCCAGCTCACCACATCACCGCACCACCCGCCAGCGCCGCCACCACCGGTCGCCCCACTCGAACAGGGCGAGGCCGGCGAGGATGGTGAGGCTGCCGAGCCAGATCCTCGGGGTCAGCAGCTCGTCGTTGACGAGGTGGCCGAGGAGCAGGGCGAGCACCGGGGTGATGAGCGGGATCAGCGCTACCCGGCTCGCCTGCATGTGGTGCAGCACGAAGTAGTAGAGGATGAAGCCCAGGGTCGAGCCGAACACCGCCAGGTAGAGGATCGACCAGAGCGCACGCGGCGGTAGCGTCGCCGGCGGCGCGAAGCCCTCGGTCAGCCCCCAGCTCAGCAGGAACAGCGGCACCGCGATCAGCAGCGCGCCGGTGGTGGTCTCGACCGGGTGCAGGCGCGTGCCGATACGCTTGATCCAGACCGCGCTGGCCGAGTGGATCATCACCGCCACCAGCACACCGCCTATCCCCACCAAGGCCTGACCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59871-57718 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRH01000007.1 Marichromatium gracile strain DSM 203 scaffold0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 59870 37 100.0 35 ..................................... CGCTGGGCGGCGACACGGCGGCGCTGGCTCGCGCG 59798 37 100.0 35 ..................................... TAGCCGCGCGCGAATGCCGTCCAGTCGCGCCGGCG 59726 37 100.0 36 ..................................... CGCAGCGGGGTAATCAGCATCGTGCCATCGGGGAAA 59653 37 100.0 36 ..................................... ACCAAGCGCGCGGTGTCCGGGTGCCCGATCGCCGAT 59580 37 100.0 37 ..................................... ATCGCCTCAACCTCGACATCCGGCCGCGCCATGCCGC 59506 37 100.0 36 ..................................... ATCGAGGCGGTCGCCTCGTGGCCGTCGGCTACGGGC 59433 37 100.0 35 ..................................... ACTTTCGAGACTCAAGCCCGGACGATTGTCCGAGC 59361 37 100.0 37 ..................................... TCGAGGATTTCGGCGCGGCCGTGTTGATCGAGAACAT 59287 37 100.0 36 ..................................... AAGGATTGGCCGAGAGCTTGGGTCGGTTCAGTCAGA 59214 37 100.0 36 ..................................... ACCAGGCCGGGATAGCGCGCGGCCAGCGCGGCGCGG 59141 37 100.0 36 ..................................... CAGGCTCACGTCGCCGCCGCGGACATCGCCATTGGC 59068 37 100.0 37 ..................................... CTCGGTGATAGCCATATCAATACCCCCCCACCAGCAG 58994 37 100.0 35 ..................................... GCGGCGAGGCCGCGGCGAAGCTGGATGCGTTGGGC 58922 37 100.0 36 ..................................... CGCGACGCTCGCGAAATAGACGACGCTGCTCGGGAT 58849 37 100.0 35 ..................................... CCCAAGTGACCGCGCCGAACTCGATGCCAACCTGG 58777 37 100.0 37 ..................................... ACACCCTGGGTCGACGCGCCGGCGACCTTGGAAGAGT 58703 37 100.0 35 ..................................... AAATGCTGGCCACCGACTGCACGGGTCAGCGGCTC 58631 37 100.0 36 ..................................... ATTAGTAGTTGCATATCAGACCGCGAGCCTGAAAAA 58558 37 100.0 35 ..................................... CTGAATTGGGCTGCTGTCATTGATGACGGTGTTGT 58486 37 100.0 37 ..................................... ACCAGGATGCGGCGCAGATGGTGGCCGAGGCGGAAAG 58412 37 100.0 35 ..................................... CAGGATGAGCCGCACGGCCCACACTGGGCCAAAAA 58340 37 100.0 36 ..................................... ATCCTCCCTCGCCTTCCAGGCAGCGGTGAAACTGCC 58267 37 100.0 36 ..................................... CGCAACACTCGCGAAATAGACGACGCTGCTCGGGAT 58194 37 100.0 38 ..................................... CTCTTTCACAATGCGGCCCAGACCGAGAGAGAAAACAC 58119 37 100.0 35 ..................................... GAAACTCGAGGTGTGTGGCGCGCCGCCCGTGAAGC 58047 37 100.0 38 ..................................... GCACACATGCTGCTCACGCGCCCGCTCACCGTGGCGAT 57972 37 100.0 35 ..................................... ATGAGGTACCAGCAGACATAGGCGGCTTTCGCCTG 57900 37 97.3 35 ........T............................ GCGACGATGAACTGTCGATGGAGATCGTGCTGATC 57828 37 94.6 37 ...T....T............................ ATGACCGAGAGGCTATGGATGGTCGGGGTCGAGACGA 57754 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ====================================== ================== 30 37 99.6 36 GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Left flank : GCTGTGGCTTGCCGACGGCACCATGGCGCCACTGGACTACAAATACACCCCGCGCCGCGAGCAGGTGTTCAAGACCCATGAAACACAGATCCTGCTGTATGCGATGCTGATCACCGAGACGTATGGGTTGCCGGTCGAGCGTGGGTTCGTCGCCTATATTCGCGACGGCAGCCATCTGATCGAAGTGCCCGTGAGCACGGTGAGGATCACGCAGACCCGGCATCTGATTGACGAGATCTTTGATATCATCGAGACAGGCAGACTACCGGCGCGCACCCGCTCGCCCCTGCGTTGTGAAGACTGCTGTTACAAAAATATCTGCGCTTGATCGCCCGTGTATTGCAAGTCTTTGAATGTTTTGATTTTTTGTGAGTTTTTTCGATGCGGGGAGCGCTTTTTTCAGGTGTTTTTCAGCCGATTCCCACTCTGAAACGCACTTTTAGAGCACTTGTTTTTCAGGGTTATGTAACTGAATTTTATGATTTTTTAGAGAATTTGCG # Right flank : CGGGTGGCATGGTTCCGGACCGGGCGGGCGCTCAACCGCTCGTCTCCCAGATCGGTCGTGATCAACTCGGCGGCGGCCCAAATCATCTCACGCGTTCTGCTCTGCTGATGACTACAAGGCGATCAGGATAGCTGGTGGCGGTAGATAAGTATGTGTAACGAGATGAGTTCAAGAACTAGGCAGTCAAGCGGGTGAAATCGGCTCTCAGCTATTGATCCCCCGTCGAGTTCATGCAACATTGGCAGGCGAGTCAGAGTCGCGACCAGACGGGCGCATGAGACCAACACCTTGAGGGACGAAAAAAGGGAACCTCAGGAGGAAATAGGCATGTTCGGGGCAATGCGGGAACTGGCGTTATTGGAACTGAACCGTCGCTGCGGAGAAACCGCGCTTGGCTTGTCTGAGATCCGTGCGCGACATGGCGAGCAACTTGCTCCACTTCTCGTCGAGGCCGCTGAAAAGGTCGCGCGCGTTTATCTGCTACAAGCAGTTCCGGGTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA //