Array 1 3159-2599 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFCI01000123.1 Bacillus thuringiensis serovar cameroun strain BGSC 4AF1 4AF1_contig000123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3158 32 100.0 35 ................................ TAGTTAACGTGACTACTAGAATAACCATTGAAACA 3091 32 96.9 34 ..............T................. ATTTTCCTTGTGTACATCATTACTTCAGTCGCAA 3025 32 93.8 34 ............G......T............ CAAGATTATAAAGGACGAAATCAAGTTGTTGCTC 2959 32 81.2 33 .........T..G.GA....AG.......... ACTCCTCATTACGTATAAGCCGACAGCTAAACA 2894 31 78.1 34 ....T....T..G.T..-...G.A........ TAGTATCGCTACACTCAGTGGGAATCTCTAGATT 2829 31 75.0 34 C..T....C..GC.-..C......G....... ATATCTTTAGCAACTCCTTACCAAAGCGTAAAAA A [2824] 2763 32 93.8 36 ......T..............G.......... AATGCAGGTGGAACACATTTACACTATGTAGATCTA 2695 32 84.4 33 ...........CC.T....T.......A.... TAACAATTATCAGCGTCTAATCGCTTTCCTAAT 2630 32 75.0 0 .C.A.....G..G...T.C.A..........C | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 86.5 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : TATTTGCAATTGAACTTCGTAAAATGAAAATGGTAAAACAAGCAGAAATAATTGAAAAGGCTTTACGAAATAGGGGCTGTAAAATCTAATACTGATAGCTTAATAAGTTTTCAAACGACCTTTAAAGCCTTATTACATTCTATCCGTAATAAGGCTTTTGTTTTCTATATCGAAATTATACAACTTCATTATCCCTGTAATGAAAATGCGGTTTGAATTTAGTTGTGAATTTGGAATAAAGTCACGATTTTTGTAAAAGAGATGCGAAGTTTTGAACAAAGCTGTGATCCTCTATTTCTTCGATCAAAGAATTTTCAAATGAGTTTTTATCAAAATTTTTTATAAAAAATAACTCCTCCACAAAATTATATCCAACCATTTCGATCAATCTCTTTCAAAATGGATGGGTTTCTTCTTTTATAAAATCAACATTTGTAACACGATTTTAATTGAACTTTATTCCAAACCAACATCCGGAGCCAAACGGTGGGGGAGATCCG # Right flank : CATCTGGGGCTACCTACTGCTTAATCTATAACATTTCATATTTCGACTCTTATCCTTCTCCTGCTCATCTTTCAAATTTTCTCGACGTTTATTCAAATGAAAATAAAAACGCTGAATCCCTTCTCACAGAAGAGGTTTCAGCTTTTTATTTTTTATCATGCCCTTTGCAACAAGATGCAATTATATTTCAGCGTATGCGCATCTTGTAGCTATTATTATGTATGCTATATTCCACAAAATAATTACAAAAAATCTCTGATTCTTTTTATCTGTTTTTATAGTATGCTTCTTTTTTGAGCCATATGCTTCTTTTTTGACTCATCTATGTACGTATAAGTTTAGAAAATTGTGTCCAGACTTACAGATACATAGAAGAAAAAGGAGCGGAGAAAAGATGAAAGGTAATAAACAAAAACGTACAAAATTAGGAAGATGGTTAGATAAAAATGGAATTGAACAAAAGGAATTAGAAACAGCAGCAAAAGTTAGTCGTAGTACCA # Questionable array : NO Score: 6.34 # Score Detail : 1:0, 2:3, 3:3, 4:0.33, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4705-4279 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFCI01000123.1 Bacillus thuringiensis serovar cameroun strain BGSC 4AF1 4AF1_contig000123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 4704 32 100.0 34 ................................ ACTTGTGCAATCCCTTGCTCGTTTGTAGTTGCTT 4638 32 96.9 33 .....................C.......... CATTAGGTGAATAAAAGGCAAAGTCTAATTTAT 4573 32 100.0 34 ................................ TTTTCCGTATGCCCAACGATTGTACGAAGACCAT 4507 32 93.8 34 ............G........C.......... CACGAAAAAAGCTGACTTTTTCCACACACAAAAT 4441 32 100.0 34 ................................ AATTCGTTATCGCCTGAAGCGCAAAAAACAGTGG 4375 32 100.0 33 ................................ TTCTGTAAGTTTGCTTGATTGTCTGCCCTTAAG 4310 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 7 32 98.7 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : TGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGAGCATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATATTAAACGGAACATTGATGAACCCAAAACAATTGATGACTATACCATCTTAATACATGAATTAAATGGTTTAAAAGTTGCGATTATTGATGGACTATAATGAAGAAAATAGCTATCTAATGTTATCTGGTATTCAACATTTTCAATTCTGCAAACGCCAATGGGCTCTCATCCATATTGAACAACAATGGAAAGAAAACGTTAAAACGATTGAAGGGACGTTTCTTCATCAGAAAACTGACCAGCCATTTATTAAGGAAAAACGAGGAAACAAACTTACTGTGCGTGCAATGCCTATAAAATCAAACGAACTTAGAATTACAGGTGTTTGTGATGTAGTAGAGTTTATTAAAGATAATAATGGGATTGAAATATATAGAGGGGAGCTGTTGAAAGCTCCCTTTTCA # Right flank : AGTGATCTGGTGTGGGTTTGAAATAAAGTCGTACCGTTTATAAAAAAGATGTACTGTTTAAAATAAAGTTGTATCGTTTTTAACAAAGTTGCACTATATTGCCCCTTTGGGTTTGTAACGAACTTTTAATTAAAATTTCTTTTAAACTAACAAATACAGTTATTCTAAAAATAATAAAGCCGATTAAAAATTCTTCTTTCACTAACTGGGCAGTTTGTTGAATAAAAAGGAAAAAGAATTGTTTATGTCGAATTATGTTGATATAGAAATAATAAACTGTAAAGGAGAAAATATTATGAGTGAGGCAAAACTTTGGGTTAGAAATATGTATACAGGACCAGGTGGTGGTGCATATACAGGACCAGATGGTGGAATGTATACAGGACCAGGTGGCGGTGCATATACAGGACCGGGTGGTGGAATGTATACAGGACCAGGTGGTGGTGCATATACAGGACCGGGTGGTGGATTATATACAGGACCGGGTGGCGGTGCATATA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //