Array 1 142862-145501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFO010000008.1 Collinsella sp. AGMB00827 AGMB827_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================================================================== ================== 142862 36 72.2 133 .C.CT....T.................A.GTG.T.A GCTGTGAACCGGACGGCTAAGAGATGCTACCTCACGGTCGCTCCAAGCATAAACTTAGGTGCAGACGGCTTCTAGGTTTTGACTCTTGGGCTACTTATTTCTGTTTCAGAATAAGTAGCCCACTTTTACTGGA 143031 36 97.2 31 .C.................................. CTATATGCACTCACAAGCCTTCCTAGGTCTC 143098 36 100.0 30 .................................... TTATCTGTGTGCATATTTGTTTCTCCTAAC 143164 36 100.0 30 .................................... AAGAGCTTAAGTGAAGTTGTTTTCATTTGG 143230 36 97.2 30 ...................................T CCAGCGGTTTTTAGCATCCCAGGTTGCCGC 143296 36 100.0 30 .................................... AAGGAGAGACTAATGAGCAGAGTAGCATTT 143362 36 100.0 29 .................................... GCCCAATCCGCCGCGCCGTTTAACAGTGT 143427 36 100.0 30 .................................... GCGCTCGCTACAACGAGGATGTGGCGCAAA 143493 36 100.0 30 .................................... GAGTTCAGGTATCAATTCCGGTCAAGCGCG 143559 36 97.2 31 ..............................T..... CAAAAAGCAGAGCGAGAAAAGCAACGGCGAA 143626 36 100.0 30 .................................... TCTTTGACCATTTTGATTTTGGCATCTCGC 143692 36 100.0 29 .................................... ACCGGATCATATACACTGCCGCCACGCGA 143757 36 100.0 30 .................................... TCTTCCCAGTTAATCGTTGCAGCCCCATTC 143823 36 100.0 29 .................................... TCGCCAGTATACTCTTTAACGTCGAGGGG 143888 36 100.0 30 .................................... AGGGGTGTCTGGGCATGGAAAAAGCCAAGT 143954 36 100.0 30 .................................... TCGCCGGTGTATTCTTTTACGTAGAGGGGG 144020 36 100.0 30 .................................... GGTTGCATAGTGCAGTCTGTAGGCTATATT 144086 36 100.0 30 .................................... AGCTTGACCCGGCAAGTGCGCTCTATCGCT 144152 36 100.0 29 .................................... CAGAAAGTGATAGGGCTGCGCGCACTCGA 144217 36 100.0 30 .................................... TTGAACGCCAAGTGGCAACGTACCGCTTGC 144283 36 100.0 29 .................................... CAACCTCACAGCCGCTCCCAGTATAAACT 144348 36 100.0 31 .................................... CTCGAGCGTGAGGGTTATGAGATAAAAGTTT 144415 36 100.0 30 .................................... CCTCCTTCATGATGTCTTAGTCATTGTTCT 144481 36 100.0 29 .................................... TGCCAATTCGACGCAGGATTGATTTGTTA 144546 36 100.0 30 .................................... GTTATTGAGCGGCTGAACATCCGACATGCG 144612 36 100.0 29 .................................... CAGTGAGGAGGCGACATGGGTCTCTTTGA 144677 36 100.0 30 .................................... TAGGCAAGCGAGTCAAAGACCTCGCTCATA 144743 36 100.0 29 .................................... TTAACAACCCGGTCTTGCTTGTCGATCGC 144808 36 100.0 29 .................................... AAAGTAAACGTGAGCTTGCCGTCAACCGA 144873 36 100.0 30 .................................... GGACATGGTGGGGCTCCCTTCGTGGTGGTT 144939 36 100.0 30 .................................... AGATCGATTTAACGGCAAAATCCCCGACAT 145005 36 100.0 30 .................................... TCCCGAACGGGATACCTGGCGCGTGCGTGG 145071 36 100.0 30 .................................... CAACCTCACGGCCGCTCCCAGTATAAACTT 145137 36 100.0 30 .................................... AGCCAAACAGCGCGTCCGGTGTTGAGGCGG 145203 36 100.0 30 .................................... TGTTCGACTTGCTCAAAAAAGAAATTGATT 145269 36 100.0 29 .................................... CCGCTTTCTCGATGCATCCGTATGCGCTT 145334 36 100.0 30 .................................... CGGGCAGTCATTGTTAGGGCGCGTCGCCTT 145400 36 100.0 30 .................................... AGCTCGATTTAACGGCAAAATCCCCGACAT 145466 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================================================================================================== ================== 39 36 99.1 33 GTTTCATTACCAGTCAGAACGACACTGCTCCAAAAC # Left flank : CTTGCGTGAGCAGCGCTCAGTTAAGCCTTGACCGAAGATCCATGCCTGAGCGCTACCCATGTTTTGTCACGCCATTTGGTTCCAGCGGCCTCCACCGCACCAAAACTGCAAGATACCGCTCGACCTGAACATCAACTATATGTGGCACATATTCCTGCAGTACAAGATCTTGACCTGGCATAATCGAGCCCCTTCACAAATTTGAGAAGCTCTGTAATAGATTTTCCGATAGTCTCGTTATAGATTTTCCGATATCAAGCTGTAGCAGTATGTCATGAGCCCCGCTCATCGTGAGACTACATGCGCTACGCTTGCTTGCTGCTTGGGGAGCTTGAGGGCATCCTCGTTGAGCGGCTTGAACCATGCGTAGCAAAGACATAGAAAGCTGTCTGTTTGAGCGGATCGCTCTGCTGCGGCGGTCAGAGCACGTGGAGACAACCAGATGTTCGCGCAATCTTGGTTAAAGCACAGAAGCTGAAGTATATGCGCTCGAAGCATCA # Right flank : CCATTGGAGCAAAATCTTCCCTGCAAAGAAGATGGACGTTCTGTCTGGCTCGACTTAAGCGACTCAAGAAGTTGCTGGTCAATCACTATTTTAGATTCCTGAATACCACACCCTTGTTCAATTTCAGGCTCCATCAGTAATACCGAAATTTTAAGAAAAAGCGCGTGATGATAGAACTCAAGGAGTTCTTTTTCACTTAAATAAAGCTTCAAACCGAAAAAGACTAAGGCTTTCTTGAGCCGCATATCATAAGCAAAGTCTAAAAATCTATGCAAATTATCAAGGTACGTAGCGCTCTGGTCATGCTGAACTGCACATCCGAACGCTTTAAGATAACGCTTCACGTCCCATTCTATATCGAACTGATAACACCCATTAATCTGATGTGTCAAACACAGAATAAGACTCTGGAGCTCGCGTCCCATTGCTTCAAACCGCATACGGCTATCTTCATCTTCCATAAGGAGATTTTGAATATGATCGTGTAACTGGCCAGTTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATTACCAGTCAGAACGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //