Array 1 479857-481290 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026983.1 Pectobacterium parmentieri strain IFB5604 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 479857 29 100.0 32 ............................. TGAATAAATAACAGAAAACTTTCGAAAACGAG 479918 29 100.0 32 ............................. GGATTAATTTTCATTGAGGATTAAACAATGGC 479979 29 100.0 32 ............................. CAGATCGTTAGTATTGGAAAAGAAATAGCTAT 480040 29 100.0 32 ............................. TATCTACTGAAACGACAAACCCGATTTCAGTG 480101 29 100.0 32 ............................. AATTTTCAACTCTTATGTCATTTGTTACTGGT 480162 29 100.0 32 ............................. CATTTACCCGACAGGAATAAATAATATGGCGA 480223 29 100.0 32 ............................. CAACTTGCTTAGCTAAATGCGCTAGCTCGTCG 480284 29 100.0 32 ............................. CTACGGTAAATCCATGATTAGCCGCGCGGACA 480345 29 100.0 32 ............................. CAATTGCTGGCAGAAACCAAATCCGGACGCCA 480406 29 100.0 32 ............................. CCCCCTGTAATGCGCGTCAATCTCGCTTTCCG 480467 29 100.0 32 ............................. ATAATCATTACGTCTCGCTTGGCATATTCTAT 480528 29 100.0 32 ............................. TCCGGGTATGCACATAGTCATTTTCTCCTGTG 480589 29 100.0 33 ............................. CATTCATCAGGCAGCGTGCGCGGCAGCTCTACT 480651 29 100.0 32 ............................. ATTCAATTTCCGCACTGATCGCTGAGGTCGTG 480712 29 100.0 32 ............................. GCGAGGATGGCAGTGATGCCCATACGCCGCCC 480773 29 100.0 32 ............................. GGCTAACGCGCACCTATTTTTCTACACCGTCA 480834 29 100.0 32 ............................. GTGTTCATTGCGTTGTAGCTCCTTTGGATAGT 480895 29 100.0 32 ............................. GAACGTAGACCTGTCGCCGTTAATCCATCCAG 480956 29 100.0 32 ............................. ATTGTTATGGGTTAACAGTAGAGGATTTGGGC 481017 29 100.0 32 ............................. TGCGCCTGAATTGGCTTTAAGCGGTGTTGCGA 481078 29 100.0 32 ............................. TACATAATCACAGTCGGCGTACAGCAACGCAT 481139 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 481201 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 481262 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTTATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 483067-483766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026983.1 Pectobacterium parmentieri strain IFB5604 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 483067 29 100.0 32 ............................. ACGCCCCTGATTTGAGCGAATCATGCTGATTC 483128 29 100.0 32 ............................. CCGTGCTCAATCGGTATTGCGTGCGTGTTCTC 483189 29 100.0 32 ............................. GAGGAATCAAAGGCATCTGTCGCGCTGCATAA 483250 29 100.0 32 ............................. ATCACCTGTTAGCGGCTGCTTTTCAGGATCTA 483311 29 100.0 32 ............................. GCTCGCTGTTCGTGGTTGGTGCGAGGCCAAAA 483372 29 100.0 32 ............................. TTAATAAAAAAAGAGCAAGTGAGGGGATACCC 483433 29 100.0 32 ............................. ATAATATAAAAACATTGAGAGGCTATGATGTA 483494 29 100.0 32 ............................. CCCCGCAATTACACTTATGCGCCGATCTGGAG 483555 29 100.0 32 ............................. TACGGATGATTTAGCGAAATTAACAACAATTA 483616 29 100.0 32 ............................. CTGTGCTCAGTGCGTCGAGAAATACCGCTGAT 483677 29 100.0 32 ............................. ATTGGGGTTATCTGAAAGAACGGCCAGCCTAA 483738 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3795382-3796970 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026983.1 Pectobacterium parmentieri strain IFB5604 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3795382 28 100.0 32 ............................ ATCAATGAGGTTACGTAACCAGACATATCGAA 3795442 28 100.0 32 ............................ TAAACTAAAATGAAGCGGTGAATATTATGAAA 3795502 28 100.0 32 ............................ TAGATATAAAATCAATGAATGAAGTCCCATCA 3795562 28 100.0 32 ............................ GCAGAGCTAGCCTACGATGAGTATCTGCGTGC 3795622 28 100.0 32 ............................ ATCTAGGCTTAATTGCGGTTTGAACACTACGC 3795682 28 100.0 32 ............................ ACACCGATCGGCGGCATCACCGCCGTCATCAA 3795742 28 100.0 32 ............................ CACCCATCCGTGATATAATCCCCATCATAACC 3795802 28 100.0 32 ............................ AGAGGTTAGATTGACGAACTCGCCATTTAAAT 3795862 28 100.0 32 ............................ ATCAACGAAACCCTCGCAATATTCATCACTTC 3795922 28 100.0 32 ............................ TGAGCCAGCAATCAGCAACCTACGCGGCAAGC 3795982 28 100.0 32 ............................ GGGTGTAAATGCCGAAACAGCCCCCGCAGTTA 3796042 28 100.0 32 ............................ GCGAAATCCCACCGCTCAAATAAAAAAGGCTA 3796102 28 100.0 32 ............................ GCCCGGTGCCTGCGGCGGTGCCAGTACCACAC 3796162 28 100.0 32 ............................ GAATGGCCCAACTACAGCATATGCAGTTCCAG 3796222 28 100.0 32 ............................ TGGATCAACAGCGCCGAGTATCGACCAATCAT 3796282 28 100.0 32 ............................ TAAATGAAACAGAGGGTGTATTTACTGAGCCA 3796342 28 100.0 32 ............................ TTTGCAGTGTATGACCAGTTAGCAACAGAACT 3796402 28 100.0 32 ............................ GTTCAGCCATCTTCTTTCTCCTGTTTCAGTAA 3796462 28 100.0 32 ............................ AACTCCCCCCGGCGGTCGAGTGACTTGCTCTA 3796522 28 100.0 32 ............................ TCATCGACCACGTCGCAGCCCTTGAGCAGCAG 3796582 28 100.0 32 ............................ GCGCCCAAGCAATGTCGGAACGACGCCAAAAA 3796642 28 100.0 32 ............................ AGACGACGCCGACGAGGTAAAGCACATCATTC 3796702 28 100.0 32 ............................ AAGCCAGCCGTATTGAACAGCACTGATCCCAC 3796762 28 100.0 32 ............................ AAATCGGGATTGCTGAAATCCAGAAATCAATC 3796822 28 100.0 32 ............................ ATCTGCATCAAAATAGTTAGTACTGGTATATC 3796882 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 3796942 28 85.7 0 A...........GC..........A... | G [3796967] ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAAAACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAATCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3815059-3820729 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026983.1 Pectobacterium parmentieri strain IFB5604 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3815059 28 100.0 33 ............................ AGTTCCCGCTGTGGAATAAAGCCGCTGGTAAGG 3815120 28 100.0 32 ............................ ATTGCGCAATAGCATTCCGCCAGAAGCCCTCA 3815180 28 100.0 32 ............................ TCACCAAACAACAGCATAAAATCACAGGAGAA 3815240 28 100.0 32 ............................ TGAGGCCTAGAAGTAATAACAAGTCAGGGCTC 3815300 28 100.0 32 ............................ TGAATTGATGAAAAAATCACATTACATCATGA 3815360 28 100.0 32 ............................ TACATAAAGGAAGCTGACAAACGAAATGCAAT 3815420 28 100.0 32 ............................ CTTCTTGTCGTAAACCTGTTGTTCCCTCGCTT 3815480 28 100.0 32 ............................ TATGGAACACCGATTGCCGGAGGAATGAACGG 3815540 28 100.0 32 ............................ AACAATGACGATGGAGCTTGAAGGTGGGATTG 3815600 28 100.0 33 ............................ TGCGCTTGATGAGATTTATCATTTCCGGAGTGT 3815661 28 100.0 32 ............................ AGAGGTCATCACGCCTGAAATGTTTAGAGCGA 3815721 28 100.0 32 ............................ TCTACTAGACTTTTGTTTTGTCGATACATTGT 3815781 28 100.0 32 ............................ TTTACGAAGGTACTCCCCAGCAATCTCAGCTA 3815841 28 100.0 32 ............................ AACAACTCCGGTAGGTAAGTCTCCAAATATTG 3815901 28 100.0 32 ............................ TGATAAGCCCCGACGATAACGCGGGTTGCCGC 3815961 28 100.0 32 ............................ TATAAAACCAGAACTAGCAAACCCGATATTTC 3816021 28 100.0 32 ............................ CTCTGGCGGCGTTTCTGACGGCCACATAATAA 3816081 28 100.0 32 ............................ GTTCCGGCAACACCAGCCGCGCCGATCATTGC 3816141 28 100.0 32 ............................ AGCGTGTCAGCAAATGAAATATTGAGATTGCG 3816201 28 100.0 32 ............................ AACTCTGGCAAGGTCGAAGACTTCAATGACTA 3816261 28 100.0 32 ............................ GAACGGCAATTACGCGAAAACAACCCCGTTCC 3816321 28 100.0 32 ............................ TGCAATACGCACACAAGATCATCGTTTGTATC 3816381 28 100.0 32 ............................ CGGCCGTGGCGTAATTTCTGCCGCGCCGTTGT 3816441 28 100.0 32 ............................ TTTTCCACGCTATCGATCGCAGCTTCAATTAC 3816501 28 100.0 32 ............................ GTGGTGATAAATCAAAAGATCATCCGACACCA 3816561 28 100.0 32 ............................ TCTGCCGCATTGAGAAAATATTCACTGAGGAA 3816621 28 100.0 32 ............................ ATCAGCACCCGTTAGCTCTGTTCGGTTTTTCA 3816681 28 100.0 32 ............................ GCCACTCATCAGCATAAAGGGGAGTAAATGAG 3816741 28 100.0 32 ............................ CGCAACGAAATAGCTTGGCGACACGTCAGCAC 3816801 28 100.0 32 ............................ AGCGAAACGATCCCCCTCACGCGCGTTAACGT 3816861 28 100.0 32 ............................ ACGCTGGATTACGCAAAGTAATGCGTTTCTAG 3816921 28 100.0 32 ............................ AGTAGCATCACGCCATACAGCGCCATCCCACC 3816981 28 100.0 32 ............................ CAGTGCAATCATCAGCAGCAAGTGAGCCGATA 3817041 28 100.0 32 ............................ ATTACGAGACTCTCCGTAAATATATTGCCCCC 3817101 28 100.0 32 ............................ TGAGCAAAAGGCATCAACTGAACAACAAAATA 3817161 28 100.0 32 ............................ ACGCTGGATTACGCAAAGTAATGCGTTTCTAG 3817221 28 100.0 32 ............................ TGCAATACGCACACAAGATCATCGTTTGTATC 3817281 28 100.0 32 ............................ AGATTGAAGGCAATGGATCCAGAAGAAGCACT 3817341 28 100.0 32 ............................ AAGAATGAAAACGCGGTCAGGGTGAACGCTTA 3817401 28 100.0 32 ............................ CGAATTCGTCTACCACAGTTTCGGTTAGACTG 3817461 28 100.0 32 ............................ GCTGGCGCGGGGAAGTATGACTCAGTCGTCCG 3817521 28 100.0 32 ............................ GATAATAACAAACTTAGGCATGTTATTTATCC 3817581 28 100.0 32 ............................ CGCATTTCGGTGATGACCCCGTGAAAGTTTTC 3817641 28 100.0 32 ............................ GCGTCATGGAGAGCCTGAAAAAAGATGGTTTT 3817701 28 100.0 33 ............................ CGCTTGCGCAGAAGTCCAATAAAAATTGGTCGA 3817762 28 100.0 32 ............................ CGTCGCTGTCCCGCTGTGTTAGCTATGACCCG 3817822 28 100.0 32 ............................ GTTGGGCTACAGCACATGAGCAAGCTAGGAAC 3817882 28 100.0 32 ............................ ACTAACACTCCAATAATCGGTGGGGAGCAGAT 3817942 28 100.0 32 ............................ GCCAGATTATCCAGTTACGCGACCAAGAAACC 3818002 28 100.0 32 ............................ GCACCCAGATTGTTGGTTGGCGCTTGGCATTC 3818062 28 100.0 32 ............................ TAACTGGTGGCAATACTCGATCTTGTGGATGC 3818122 28 100.0 32 ............................ AGCACAGAGGCGGCAAAGCTTATATCCAGCCT 3818182 28 100.0 32 ............................ AGATAGCGCGGATATCAAACCGAATCCAGCTA 3818242 28 100.0 32 ............................ AAGCAATGTCGGAACGACGCCAAAAAAAGGCG 3818302 28 100.0 32 ............................ ATCACATCGGTTATCGATAGTGAGTCACTTGC 3818362 28 100.0 32 ............................ AGAACACAAAAAATCGACAGCGAATTCAGGTA 3818422 28 100.0 32 ............................ TCGCAATAGCGGGGCTTATTTTTGGAGATGAA 3818482 28 100.0 32 ............................ GCGCATGTGTCGTCGGCTACGAAGGTCAATCA 3818542 28 100.0 32 ............................ TTCTCTGGTGAGACCATTCCACCATTCAGCCA 3818602 28 100.0 32 ............................ TGAGTGGGCTACATTTACGCACTATCCCTGGC 3818662 28 100.0 32 ............................ AGCAACGTTAGATACAGCGCAGACAGTTACCA 3818722 28 100.0 32 ............................ TCGCAAAAATATCTTGTTTCGCTATTTCGCGG 3818782 28 100.0 32 ............................ CGATGCGATGCCGTTCGCACAGAACCGGCTGA 3818842 28 100.0 32 ............................ AGTGTGCGTAAGCGGAGAAGTTCCCCACCTTT 3818902 28 100.0 32 ............................ AGCCATTTTATGACAGGAACAGCCATAGAATT 3818962 28 100.0 32 ............................ AGCGCATCCTCAAGCGTCGGAACTGGGTCAAT 3819022 28 100.0 32 ............................ TGATAATCAACCGGTGTTCCACTAAACATAAA 3819082 28 100.0 32 ............................ AGTCCGACAAACAGCACCACCCGTTCAACCTC 3819142 28 100.0 32 ............................ ATTTGCCCTGCACTCTCTAGCCATCGATACAT 3819202 28 100.0 32 ............................ AGCAGAGAAGACCTTAAATCTCTTCACATCAT 3819262 28 100.0 32 ............................ TACGGGCAGAGCTGATCGCCAAGTTTGGCCGC 3819322 28 100.0 32 ............................ GCACAGGGCGGCGCGAATGTTTCCCGCGAACT 3819382 28 100.0 32 ............................ AACTAAATCCAGAATTCGCTTTAAATATTTGG 3819442 28 100.0 32 ............................ GGGTTAAATGTCACAGCGAGATTATACGTACC 3819502 28 100.0 32 ............................ GAATTTGCTGCATCAGGCAACAGCATATCAAA 3819562 28 100.0 32 ............................ AATATCCCGATCCTGCTCGTGCTGGTGAAACA 3819622 28 96.4 32 .............T.............. CGCTTGCTGTTTTGTACCTGATGGCATCAGGA 3819682 28 96.4 32 .............T.............. AGTACGTGAAAGATAACGCCCCACCACTGCCT 3819742 28 96.4 32 .............T.............. TCTATACACTTGAAACTGATTACCCAAATCCA 3819802 28 96.4 32 .............T.............. AAAGCTTACCGGAATCGAGTTTTGACCAATGA 3819862 28 96.4 32 .............T.............. ATATAGGCTCAATGATGAATTGTTAGATACCC 3819922 28 96.4 32 .............T.............. TCAATCGTCCCGTCAATCCACCCCTCATACTG 3819982 28 96.4 32 .............T.............. AGCCTGCTAACGATGCGATGGGCGATCTGACC 3820042 28 96.4 32 .............T.............. GGGGAAATTAATCCTTTCTGAGGTAAAGAAAG 3820102 28 96.4 32 .............T.............. GTATAGGCTCAATGATGAATTGTTAGATACCC 3820162 28 96.4 32 .............T.............. ACGCTACAGGTTCTTTCGCCGCCCTGTCATAA 3820222 28 96.4 32 .............T.............. CGATACACGAAAACCCAACGGTGATGATGGCC 3820282 28 96.4 32 .............T.............. CACTTAACGCAGTCGCTATCGCAGCAACCGGC 3820342 28 96.4 32 .............T.............. TCAATACGCTACAGCAGACAGTCGCGACACTG 3820402 28 96.4 32 .............T.............. GCCAGGCGAGGGAGCTGCACCGGACAGCGGGT 3820462 28 100.0 32 ............................ ACCTGATAGAAGTTCATGCTTGTGGAAAGAAT 3820522 28 100.0 32 ............................ TCTAGCCAGTTATGAATTTCAACCGACTTTGA 3820582 28 100.0 32 ............................ ACTGTTATTTCATACGGCACATCAGGTGGCAG 3820642 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 3820702 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 95 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAATTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGCTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAATTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGCGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //