Array 1 118267-122787 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKM01000003.1 Akkermansia muciniphila strain BIOML-A44 scaffold3_size503895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 118267 33 100.0 34 ................................. AGGAGAATTGTTGTAACTGCTTAATGGTTATACA 118334 33 100.0 34 ................................. ACCCGTAGGTAAAATAGACCAGACCGCCGTTACA 118401 33 100.0 34 ................................. GATATATTTGCATGGGACGTTGCCCCCGCCCTCG 118468 33 100.0 34 ................................. ATCCGCAATGTTAAAGGCTCTACGGGCGGCGTAG 118535 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 118602 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCTTCCCATGTGTGC 118669 33 100.0 34 ................................. CTTTCTTTTAGGGGGTTATGCGGGGGTGATTCCC 118736 33 100.0 34 ................................. AGAAGGGCCGGGGTTAAACCCGGCTGACTAGCTT 118803 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 118870 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCCTGCCACATGTGC 118937 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 119004 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 119071 33 100.0 34 ................................. CCCGGTAGGTAAAATAGACCAGACCGCCGTTACA 119138 33 100.0 33 ................................. TGAGACGTCATAGTTAACGCCCTGCCACATGTG 119204 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTTGCCC 119271 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGTGTGATAAG 119338 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 119405 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 119472 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 119539 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 119606 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 119673 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 119740 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 119806 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 119873 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 119940 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 120007 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 120075 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 120142 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 120209 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 120277 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 120342 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 120410 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 120476 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 120542 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 120609 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 120676 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 120743 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 120810 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 120877 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 120943 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 121010 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 121077 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 121144 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 121211 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 121278 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 121345 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 121412 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 121479 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 121546 33 100.0 35 ................................. TCCTATCGAACGCACGTTGCCACCATTGACCGAGC 121614 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 121681 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 121749 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 121815 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 121882 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 121950 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 122017 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 122084 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 122151 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 122219 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 122286 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 122352 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 122419 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 122486 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 122553 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 122619 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 122686 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [122705] 122755 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 68 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CCTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 281804-284235 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKM01000002.1 Akkermansia muciniphila strain BIOML-A44 scaffold2_size383866, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 281804 31 100.0 34 ............................... TTTTAGTTTAACTTATTTTATTACCTTGTCAACT 281869 31 100.0 34 ............................... AACGTTTTTGGTAGTCACAATGTGGAATCCGTTG 281934 31 100.0 33 ............................... TATCTTGTTGTCAAATGTTTTTTGTTTTTGTAT 281998 31 100.0 34 ............................... ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 282063 31 100.0 33 ............................... CTATTGTTTAATGTTTAGTGTTTTATTGTTTGG 282127 31 100.0 33 ............................... CATGTCATGCCGTTTTCGTTGGTTTTCAGTGGA 282191 31 100.0 35 ............................... ATGATTTAGTTTCCTTTCTTTTAGGGGGTTATGCG 282257 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 282322 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 282387 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 282451 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 282516 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 282581 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 282646 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 282711 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 282776 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 282841 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 282905 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 282970 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 283035 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 283100 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 283165 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 283230 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 283295 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 283360 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 283425 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 283490 31 100.0 34 ............................... TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA 283555 31 100.0 34 ............................... TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG 283620 31 100.0 34 ............................... AGCATCTAAAATATGTGCGTAAGCTTCGACACGG 283685 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 283750 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 283815 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 283880 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 283945 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 284010 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 284075 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 284140 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 284205 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 38 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //