Array 1 506541-505906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBBO010000004.1 Clostridium botulinum strain DFPST0016 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================== ================== 506540 28 96.4 37 ..............T............. ATTGGTTGTAAATACCTAATTTATTCCCAGAAGATAC 506475 28 100.0 38 ............................ GCATTAAATAAAACTATAAAAGAAGCAACAAAAATAAA 506409 28 100.0 37 ............................ GCTTTGATGAAAAGCAACTATACAAATGTAAACATAC 506344 28 100.0 40 ............................ GCGTATTTAATTAAATTAATTACCTATAAATGGATAATTC 506276 28 96.4 39 ..............T............. ACGTCTCTCCCAACAAAAGCACATAGCTTTAGTTAAGTC 506209 28 96.4 36 .....................G...... ATAGAATATTTAATATCCGAATATAAAGAAAACAAA 506145 28 85.7 118 ............A.T..A.....A.... GTAGTTTTCATACCATACATAAGCTTAAAACATTAAATATCTAATTATTTAATGAAACTCCTTCTCGTTCCCTCGAACGAGTAAGCGACTCACACCAAATCACAGATTTGGGTTCCCT 505999 28 89.3 38 GC.................C........ ACGTGAAAAATAATGTTGGATAATACAGCGAAAATAAG 505933 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================================================================================================== ================== 9 28 96.0 48 ATTTAAATACATCTCATGTTAATGTTCA # Left flank : CTGAAATAGAAGAACATCAAAAGAAATATTCAGAGGAAGTAAAAAATAAATATGAAAACACCTCTGCTTATAAGGAAAGTAATGAAAAAACTTCTAAATATACAAAAGAAGATTGGAATAATATAATGAAAGATTGGGATATTATTTATAAAAAACTAGCAAATCTTATGGACAAAAATCCAGATGATGAGGAAGTTCAAGAATATATTCACCAATTTAGGGAGCATATTTCAAAAAACTTTTATGATTGTACCCCTGAAATATTTAGGGGTCTTGGGGAACTTTATGTTAATGATGAAAGATTTACGAATAATATAGATAAATATACAGTTGGTCTTTCTAAATTTTTAAGGGAAGCTATTAATGTTTATTGTGACAATATAAAATAATAATTATATGCTATTTTAAATATTATCTAAAATAGCTAGTATTTATTACACAAAAATAAGGTGATTCAAAATAGATTTAATTTATTTTGAATCACCTTATTCTACATGCTG # Right flank : ATCATAGTAAAATAGCCATTTCTCAATTCTAAGAATAGCATATAGCCTTTAATTTTACAAGGTTTCAAAGAAATTTTTCCAACCGTTTGTCATTTTTTATAAAGACATAGATAAAGCTTATCTTAAGGCTTATATTTCAATACCTAGAATAGAATTTAAAATTAAATGTGGTTGGAAAATTCTTTTACTTATAATTAGATTAATTAGTTACTAAAATTAATTTTATTTTATTTTTAAAGGTATTCCACAGGTTACTAAATAAACCTCATCACTCAAAGAAGCTATAAATTTATTTATAATACCTTGAAAGTCTCTAAATATCCTACCTAATTTATAGGCTGGAACAATGCTATAACCTACTTCATTAGTAACTAATATTATGTTTTTATTTTCTTCTTTTACTGATATTATTAGATCATAAAACTCTTTTTTTATCCCCTCTAAAATTTCATCTAATTGTTCTTCTTTAATATTTTCATAATCTATTTTTTTATGAAACA # Questionable array : NO Score: 4.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.99, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCA # Alternate repeat : ATTTAAATACATCTTATGTTAATGTTCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 524943-524518 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBBO010000001.1 Clostridium botulinum strain DFPST0016 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 524942 30 80.0 34 TA.A..T..AT................... CATACAGAAAGATTATTTATAGTATCTTCTATGT 524878 30 100.0 36 .............................. GTTGTAGTTTGCTCATAAACAGTTACCATTTGTCCA 524812 30 96.7 37 ...............G.............. TTGCTTTTAATGCCAAAGCCATAGCTTTGTTACTATC 524745 30 93.3 36 ........A.......G............. GCAGTTTTCCCAAAAGCAACAATATTAAGAAATGCA 524679 30 93.3 36 ........A......G.............. AGAACTCTACAACTAACAGTATATTTTCTACAATTC 524613 30 96.7 36 ................G............. AATTTATAACTTTGATACTCAACCATGTGCATAAAT 524547 30 80.0 0 ...............G.....CGC....GC | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 91.4 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : ACGATGGAACAGGTTGGGTCGATTGTCTCCGTTGTCGTAAGATACTAAGAGCCTAGATAAAAGAAAAAAGATTATTTAAACAAAAAGAACCCCAATAAATAGAGTTCTTTTTTGTATGAGATTTTCTATATATTGGTGCTATGTTTTGGTCTATTTTTATTATATCCAATACATGGATATTTTAATCAAAGCTTTTCTATTTACCTAAAATATGTTAGGTTAAAACAGTATTGGATATAGAAGAAATTAAATAAATTTGTAAATAAAAACTCTAGATTATTTCTAGAGTTTTTTATAATATAGGAAATTAAAAATAATAATTGGATATAATAGTAAATAAAAAGAAGAGCAATATTCTATCATTCTTCTTTTGACGTCAAAAATACGTCAAAAATTATATTCTATTTTTGACGTATTTTATCTATAATAAAATTTATTAGAATACTTATAAAGCTAGTAATTAAGCAGTTTTGTCTTATAAATTACTTTTATTTTTTATA # Right flank : AGAGAACCCAAAGTTGCAATTTGGAGTGATTTGTTTACTTCTTGCAGGGGAGAAGTAGGAGCTTCATTAATTTAATTTTTCAAGGTATAATAAATTTATAAACCTATTTTAGACATTGAAATATAAGGATTAGAATAGGACTTTATTTTGTATTTACAAAAAAGCAAAATCACTTGGAAAACTTTCTGCAAAACCTTGCAAAATCAATGGGTGTATGATATTCTTTAAAATAAGGAATGGCTATTTTACTATGATTGAACAGTAACATAGGATGTATTTAAATAGTTGTAATTGCAATAACAGCATAGCTGTAGCTCGTTGAATAGTAACATGAGATGTATTTAAATGCGACAGTTCTGTTATATTGTTCTTCTGCAGCTTGATTGAACAATAACATGAGATCTATTTAAGTAGGGAGCCCAAATCTCTGATTTGACGTGAGTCGCTTACTCCTTCGAGAATGAAAGAAGGAGTTTCATTAATGAAGTATAGCTTATATC # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 580428-580647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBBO010000001.1 Clostridium botulinum strain DFPST0016 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 580428 29 100.0 34 ............................. CTAAATAGTCTGGAACAACAATATAATGAATTAA 580491 29 100.0 35 ............................. TTCCTTATTGATTCAAAGATGCTTCTTTGTTTCTG 580555 29 96.6 35 ....G........................ CAAACAAAAACATTTAAGGAATGTTTTCTAACAAA 580619 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= =================================== ================== 4 29 98.3 35 ATTTAAATACATCTCATGTTAATGTTCAA # Left flank : AGTTTCTATTTTATCTATAAATTCTTTACTTAATCCCCTAATATTAAAAATATACAACCTATCTTTTTTATAAAATTTATCTCTTTCTATAGGATAAAAACTATTAAACACATAATTTTTATACTGTTTCTTTGGATGTATTTTTTTTAAATCGTTATCCAAAAGCATACTTTTATTTATGTTTTTCCCTATTATATATCCACAATCTTCAAAATATATGTCTTTTTTTAACATTACTGTTGCAATCAGTTCCCAAAATTCCATTTATACACCTCTTTATACAAATTTATCTATATTATACCATACACCCTTTAGTTAATATAACTGATTATTCTACTTATATTTTAAAAATATTATTATTTTTATTAATAATAAGTTAATTACTCATCATATTCCATTCTAAAACTTCGCATAAAATAAAAGCCTTAGATTATTCTAAGACTTTTAATGATTCTTATTATTCAACATATGGCTAATACTTTAGAAAATGTATTAAATAC # Right flank : ACCATAGTAAAATAGCCATTCCTTATTTTTAAGAATATCATACAACCATTAATTTCACAAGATTTTAAAGAAAGTTTTCCAAGTAGTTTTGCTTTTTTACAAATATAAAATAAAAACCTACCATAAGCCTTATATGTCAACGCTCAAAATAGGTTTTAAAATTTATTTTGGCTGGAAAAATTCAGTTAGTAGAACTCCTTCTCGCTTCCTCAAATGAGTAAGTACCTCACACTAAATCTCAGATTTATATTTACTACTTAAATACATCTAACTTTACAATATAATTGGATTGCCCAATAAAAAATCGCAAATTCAATCTCTTGAATAATGCGATTTTTTACGTTTATTATTATAGTAAAATAGTTCCCTTTGCCAAAATAGCTACCTCTCCAGACACTAGTATTTCTTTTTCAGAAATGCTCATAGAAACCTTAATTTTACTAGGTCTGCCGACAAATCTTCCTTGATTTATTATAATCTCATGACCTACATTAAAAATA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //