Array 1 30732-32503 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDB01000042.1 Providencia rettgeri strain GMW175_S1 33_contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30732 28 100.0 32 ............................ ATCAACAAGCTGCTTATCGAGCATAAAAGATT 30792 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 30853 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 30914 28 100.0 32 ............................ ATCCTGACTTAAAAAAATTTAACGATGATTTA 30974 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 31035 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 31095 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 31155 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 31215 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 31275 28 100.0 32 ............................ AGTACGCCTTGGCGCTTTTGCTCTCACTTCAT 31335 28 100.0 32 ............................ AAGCTAGCATCAAGTAAGATACTGACCGTAAT 31395 28 100.0 32 ............................ TCACAGGAATAGAAATCGAAATCGGTTCACCC 31455 28 100.0 33 ............................ GTTGGCATTTCTTTTAGTTCGACTTCGGAACGA 31516 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 31576 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 31636 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 31696 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 31756 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 31816 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 31876 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 31936 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 31996 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 32056 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 32116 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 32176 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 32236 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 32296 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 32356 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 32416 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 32476 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.0 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 41141-42131 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDB01000042.1 Providencia rettgeri strain GMW175_S1 33_contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 41141 28 100.0 32 ............................ CATAACTTCAATCTGTTCTGCTCGAACATCTA 41201 28 100.0 33 ............................ TAGAGCAAAAAATATGCAATTAGCTAAATTAGA 41262 28 100.0 32 ............................ CGTATGCACTTGCTGTTTCGAAGTGATTACTA 41322 28 100.0 32 ............................ TGTGCTTTTGCTGCTTCCACTTGTTTAACATT 41382 28 100.0 32 ............................ GCACCAACTTACAAAGCCGTACCTTTACCACT 41442 28 100.0 32 ............................ ATAAAAACCTGTCGTTGCTTGCCCCGGTAAAC 41502 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 41562 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 41622 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 41682 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 41743 28 100.0 32 ............................ GCTATATCCTTGTAGTACTGGAACTTTATTAC 41803 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 41863 28 96.4 32 ..........A................. AGAACACTTTAACCGTATCGCTATCAATCGAT 41923 28 100.0 32 ............................ CCCATGTATAAACTCACGGCCTAATAACTTAG 41983 28 100.0 32 ............................ TGTCGAAATTCAAAACTGTCAAAAGTCTTATA 42043 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 42103 28 89.3 0 ...T......A.........T....... | G [42129] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATGATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAATCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //