Array 1 119390-120929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNDU010000016.1 Phocaeicola vulgatus strain D43t1_170807_F8 NODE_16_length_121721_cov_32.3331, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 119390 33 100.0 32 ................................. CTAAAAATATGGTGACTATCCTTGGTGAAAAA 119455 33 97.0 32 ................................T GAATAAGTTTAAATCTTTAATGGCTGCATGAT 119520 33 100.0 33 ................................. TCCGAGCTATGATAGTGGGGGATTACGCGAAAT 119586 33 97.0 33 ................................T AACCCGTCCGTACCGATGTCAGGTGAATTTGTA 119652 33 97.0 32 ................................T TTTCCCAGTGCATACAATCAGTTTGAGATGCT 119717 33 97.0 33 ................................T GTGTGCATAGCACAACCATCACGACAAAGCCCG 119783 33 100.0 32 ................................. AGGTAAGCTCCAAAGCAAGGAGGCATTATGTT 119848 33 100.0 32 ................................. TAATCCCCGGTAAACCCGGAGTTACGCAACAG 119913 33 97.0 32 ................................C TCAAATGTCTTGTGCGAAAAGATATTTATTTT 119978 33 97.0 31 ................................T ATCACAGTAACCGGCATTAATTGCCGGTTAT 120042 33 100.0 33 ................................. TCCTTGAATACCCATACAGTAATATATCGCAGA 120108 33 100.0 34 ................................. GTAACGATTGTTTCAGGGACACCACCATCACCCA 120175 33 97.0 33 ................................C TTTGGAGCGAAAAACTGACTCAATTGAAGAGCT 120241 33 100.0 33 ................................. TCTCTTATTGGTTATCGTAATACAACGCTTGGG 120307 33 97.0 33 ................................T GGAATATATCCCCAGGGAGTATTGAACAAACGG 120373 33 97.0 33 ................................T TTGTTCATTTCCTTTTACTGAATTCCATTGACG 120439 33 97.0 31 ................................C TTCTTGGGAAGCAGCGCGAGCAGCACGTCCT 120503 33 97.0 33 ................................G GAAAACAACTAAATCAACATCTAATTCTCCATT 120569 33 97.0 32 ................................T TTACTCTCTGTAATCTTTATTATTGACCTAGA 120634 33 97.0 33 ................................G ATTATGCACCCTCGTCAAACGGGGCAAGGGATT 120700 33 100.0 31 ................................. TATTCTGAACACATTGCAAATGTACAAAAAG 120764 33 97.0 32 ................................T GGGAAGCTTGCGCCGGATACATTATGGACGTT 120829 33 100.0 33 ................................. ATGACGAGGTGAATACGTGTATAGACAACCATA 120895 33 93.9 0 ....................A.........G.. | TA [120914] ========== ====== ====== ====== ================================= ================================== ================== 24 33 98.0 32 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //