Array 1 100575-100247 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012071.1 Selenomonas sp. oral taxon 478 strain F0592 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 100574 37 100.0 36 ..................................... ATTCTCTACGCCGAAAAGACCGAGAGCGAGATTATA GTG [100547] 100498 37 97.3 35 .T................................... ATGAGGTTGCGAACAACCCTGCGGAACTGCCGGCG 100426 37 100.0 34 ..................................... CATCGCTTTCTCCACATCTTTACGAGTGAAAAAA 100355 37 100.0 35 ..................................... GGTCTTCTGTTTTTCTTTTTCATGGAGAAAACCTC 100283 37 86.5 0 ...............................GAGCG. | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 96.8 35 GCTGCACCACCCACAAAGCCGCGTGCGGCATTGAAAC # Left flank : CACCACCCACAAAGCCGCGTGCGGCATTGAAACTCGAAGTTGCGGGCACGAACTTCGCCCAACAGTGCGGCTGCACCACCCACAAAGCCGCGTGCGGCATTGAAACCAGGAAGAATACACCCGAATGGGTTTGAAAACTTTGGTTGCACCACCCACAAAGCCGCGTGCGGCATGAGCGCCCCTATCGGCTCGCTGCGCTCGCCACTTACTGACCTGTCCGAGAAGCAAGCCCATAGGGCACAGCTGAACGGGAAACAGGTCGTATGGGAAAACGTCCCAAGAACACGAGTAAAACGAAGTGTGATTGGCAGACGTTGACCGCTCCCCCGCATCGGCGGGGGAAGCTAATATTGCGTGATTCTGCGAGAAAACGGAGCCTAACCAAGCCTCCCCTGCGTGAGCGGGGGAGGGGGACCGTGAAGCGGTGGTGGGGGCGAAAGGGAATAGCCGCGTGCGGCATTGAAACCTCCTCGTGCCATTTCGGCAACTCTTGATACGTT # Right flank : CCCTATCGGCTCGCTGCGCTCGCCACTTACTGACCTGTCTGAGAAGCAAGCCCATAGGGCACAGCTGAACGGGAAACAGGTCGTATGGGAAAACGTCCCAAGAACACGAGTAAAACGAAGTGTGATTGGCAGACGTTGACCGCTCCCCCGCATCGGCGGGGGAAGCTGATATTGCGTGATTCTGCGAGAAAACGGCGCGTAACCAAGCCTCCCCTGCGCGAGCGGGGGAGGGGGACCGCGAAGCGGTGGTGGGGGCGAAAGGGAATAGCCGCGTACAGCGTCCTATGTGGAGGCGTTTGCCCAGAAGCTTCAACAAGATCTGTGAGATGTCGTTGTCAATATCGCCGGAATGAGCTGCATCGTTCCGGCTTTTTGCTGCGCGAATTTCTTCTCCTCAGAGCGGCAGCCGCTTTTTTCGTTTCGTGTGATACGGGAAGCAGGTTGAAATGCGAATGCGAATTGTGGTAAAATAGGAAAGTCTAATGACTGGCAGGAGGAAT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCACCACCCACAAAGCCGCGTGCGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 101868-100897 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012071.1 Selenomonas sp. oral taxon 478 strain F0592 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 101867 37 100.0 34 ..................................... GTATCAGGGACGGCGCGGTGAAGCTCAAGGCGAT 101796 37 100.0 33 ..................................... CAAAACGCGGGATAAGGGACGCGAGTGCGCCGT 101726 37 100.0 35 ..................................... GGCACAGTGGGTCAACGTGGGGCACGTGATCCCCG 101654 37 100.0 36 ..................................... TTCTTCAACGTCTCATCGTCCGCACCCTCGACCCTC 101581 37 100.0 34 ..................................... AAAACGGCTCGCGCGGTTTCGAAATCCTCCTTGC 101510 37 100.0 35 ..................................... CGCAAACTTCACGTGAGATAGATGAGGGCTTATTT 101438 37 100.0 35 ..................................... TTCGTGATGTGGCAGTAATGGCAGCGCGTGGTGAG 101366 37 100.0 34 ..................................... AGCTTTTCTTTACAGACGCAAAGGATATGATAGA 101295 37 100.0 37 ..................................... TCGAAGTCGAGGTGGAGGAATCCGCGCGCCCGATGGG 101221 37 100.0 34 ..................................... CTTTGCCTCGCACCATAGGCTCGTCGGCGAACAG 101150 37 100.0 35 ..................................... CTCAATCTCGCCAACAAACAGCGACACCGAGTGTT 101078 37 100.0 36 ..................................... TCGAAGTTGCGGGCACGAACTTCGCCCAACAGTGCG 101005 37 100.0 36 ..................................... CAGGAAGAATACACCCGAATGGGTTTGAAAACTTTG 100932 36 86.5 0 .T.............................-..GCG | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 99.0 35 GCTGCACCACCCACAAAGCCGCGTGCGGCATTGAAAC # Left flank : AGAAGGATGGCTGTCGTTTGAACGACGATGCCCGTCATATTTGGTATGAACGCTATGAGGGATATATGGAGAAGGACTATCAGGAGTATGAAGGGAAGACGCCGCGTGCCTACATTGATTCCTATGTAGAGGCGTTTGCACAGAAGCTTCAACATGATCTGTGAGATATTGTTGTCGATAGAGCCGGAGCGAGTTGCATCGTTCCGGCTTTTTACGTGGGGCAAACACTTGTTATTTGGCGTAGTCTCTGCTATGATATAGACGGTGCAGAGAACGAAATGGAAAGTCGTGGGGATGTGCCGCAAAGCCGCATAACACCGTCGAGACTTTCCAATTTGCTCATGGGCGTGCTAGGTGCTGATCGCGCAAGGGATTGCGCCGGAGAGAGCAGCTGAACAGGAACAGATATTTTACATATTTTCCGTCAGACATCTCAAATTTCCGGAGACTTTCCAAAAGGGCTTTTTCTCCCTAGGGGGAAAAGGGCTGAGAGCGATGAG # Right flank : CCCCTATCGGCTCGCTGCGCTCGCCACTTACTGACCTGTCCGAGAAGCAAGCCCATAGGGCACAGCTGAACGGGAAACAGGTCGTATGGGAAAACGTCCCAAGAACACGAGTAAAACGAAGTGTGATTGGCAGACGTTGACCGCTCCCCCGCATCGGCGGGGGAAGCTAATATTGCGTGATTCTGCGAGAAAACGGAGCCTAACCAAGCCTCCCCTGCGTGAGCGGGGGAGGGGGACCGTGAAGCGGTGGTGGGGGCGAAAGGGAATAGCCGCGTGCGGCATTGAAACCTCCTCGTGCCATTTCGGCAACTCTTGATACGTTGCTGCACCACCCACAAAGCCGCGTGGTGCGGCATTGAAACATTCTCTACGCCGAAAAGACCGAGAGCGAGATTATAGTTGCACCACCCACAAAGCCGCGTGCGGCATTGAAACATGAGGTTGCGAACAACCCTGCGGAACTGCCGGCGGCTGCACCACCCACAAAGCCGCGTGCGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCACCACCCACAAAGCCGCGTGCGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 3 104930-103794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012071.1 Selenomonas sp. oral taxon 478 strain F0592 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================================================================================================================================================================================= ================== 104929 35 97.1 37 ..........G........................ TATACGTTAACCTCGTGGGGACAGAGGTTAACATAGC 104857 35 100.0 37 ................................... TTATCTACAGAAAACTCTGTAGAAAGGCATTTCTTGT 104785 35 100.0 37 ................................... AACTCCTTGCGCACGAAACACATAGTCTCGGCGATGT 104713 35 100.0 34 ................................... CTTTTTGTCCTCTTAGCCGTAAAGAGGACATGGC 104644 35 100.0 37 ................................... TCAACGAGCCCGTACTCCCCCTTCAGGAATGTGATGT 104572 35 97.1 39 .........T......................... AAGCTGACCGAGAGCAGGTCAAGGTCTTTGTCGAAAGGT 104498 35 100.0 37 ................................... CAGCCCCTTGATCTCGTCCGCGACCATCATGTGCGGC 104426 35 97.1 35 .........................A......... TATAAAGCTCGTCTTTGACGAGTTCCCGAACGGGT 104356 34 88.6 209 .............................-..GCG CCCCCATCGGCTCGCTGCGCTCGCCACCTCCCCCGCATCGGCGGGGGAAGCTGATATTGCGTGATTTTACGAGAAAACGGCGCGTAACCAAGCCTCCCCTGCGCGAGCGGGGGAGGGGGACCGCGAAGCGGTGGTGGGGGCGAAAGGGAATAGCCGCGTGCGGCATTGAAACAACGTAAGCAGACATAATCGAATCCCTCCTCGTGCGC 104113 35 100.0 37 ................................... ATCCTTTTTGTCCTCTTAGCCGTAAAGAGGACATGGC 104041 35 97.1 36 .........T......................... CTGCCACAGAGACCTGTGCGCGAGCCACAACTCCGT 103970 35 97.1 36 .................T................. CCTTGCACAGCGGCTCGAACTTCATGACCTTCTGGT 103899 35 100.0 36 ................................... AAGTTCCCGACAGGGATGAGGTCGCTAACTTCGAGT 103828 34 94.3 0 .............................-..G.. | C [103796] ========== ====== ====== ====== =================================== ================================================================================================================================================================================================================= ================== 14 35 97.7 50 TGCACCACCCACAAAGCCGCGTGCGGCATTGAAAC # Left flank : ACCACCCACAAAGCCGCGTGCGGCATTGAAACAACACATGTCCTCGTCTAAAAATCTTACCAATGTAGCTGCACCACCCACAAAGCCGCGTGCGGCATTGAAACAACTCCAATCAAAAGATTGGAATATCGGCATGCTGTTGCACCACCCACAAAGCCGCGTGCGGCATGAGCGCCCCTATCGGCTCGCTGTGCTCGTCACTTACTGACCTGTCCGAGAAGCAAGCCCATAGGGCACAGCTGAACGGGAAGCAGGTCGTATGGGAAAACGTCCCAAGAACACGAGTAAAACGAAGTGTGATTGGCAGACGTTGACCGCTCCCCCGCATCGGCGGGGGAAGCTAATATTGCGTGATTCTGCGAGAAAACGGCGCGTAACCAAGCCTCCCCTGCGCGAGCGGGGGAGGGGGACCACGAAGCGGTGGTGGGGGCGAAAGGGAATAGCCGCGTGCGGCATTGAAACAGCTCCCGAACAGGCGTAAATGTCCGCTCGAACGTCGC # Right flank : CCCTATCGGCTCGCTGCGCTCGCCACTTACTGACCTGTCCGAGAAGCAAGCCCATAGGGCACAGCTGAACGGGAAACAGGTCGTATGGGAAAACGTCCCAAGAACACGAGTAAAACGAAGTGTGATTGGCAGACGTTGACCGCTCCCCCGCACCGGCGGGGGAAGCTAAAATACCGTAGTCCTTCACGCTGGACGGACTTTTGCAGCCCCCAGCGTCCTGCGCATCGGGGCGAGAAGCCGAGATGCCGTAAATGAAAAGCCTCCCATGCGCGAGCGGGGGAGGGGGACCGCGAAGCGGTGGTGGGGGCGAAAGGGAATAGCTACATGCGGTGATCTGCTATGAAATACATCATTTGCTATGACATCAAGGAGAATGCAATTCGTGCTCGTGTTGTAAAATGCCTTGAGGCATGGGCTCTGCGCATCCAGTTCAGTGTGTTTTCCGGCAATTTTTCGACTGCCGAAGTTCGAGCGGTGCAGGAGGAGTTGCTGCATATCAT # Questionable array : NO Score: 4.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:-1.33, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCACCACCCACAAAGCCGCGTGCGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 4 105652-105256 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012071.1 Selenomonas sp. oral taxon 478 strain F0592 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 105651 37 100.0 34 ..................................... TACGGGCGGCTGCATGACCCCTCGCATTTATGAG 105580 37 100.0 35 ..................................... CTTATGGCGAGCATCAAACTCGATAGAGCGAACAA 105508 37 100.0 37 ..................................... GAAGATTGTATTCGGCTCAGAAGCAGGGAGGTCTGTA 105434 37 100.0 35 ..................................... AACACATGTCCTCGTCTAAAAATCTTACCAATGTA 105362 37 100.0 34 ..................................... AACTCCAATCAAAAGATTGGAATATCGGCATGCT 105291 36 86.5 0 .T.............................-..GCG | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 97.8 35 GCTGCACCACCCACAAAGCCGCGTGCGGCATTGAAAC # Left flank : GTCCGAACGAGGTGGAAAACCGGACGCAGAGTGGTGCTCTGTGGAGGATTTTCCGCCGAAGTGCGGGCAAAAAAGATGCGTCAAGATGGTTGTACCGAATTTATCAGTGCTTCCTAAAGTAAAGGACGCAGTGGAAGGGCTGCTTACAGCGATATCGCCGACATAATGCCAAGGGGGGTGCTGCACGAAGGCTATAGAGTGCAGCGCCCTCTTTGCATGGGCAAACACTTGTCATTTGGCGTAGTCTCTGCTATGATATAGACGGTGCAAAGAACGAAATGGAACGTCGTGGAGATGTGCCGCAAAGCCGCATAACACCGTCGAGACTTTCCAATTTGCTCATGGGCGTGCTAGGTGCTGATCGCGCAAGGGATTGCGCCGGAGAGAGCAGCTGAACAGGAACAGATATTTTACATATTTTCCGTCAGAACTCTCAAATTTCCGGAGACTTTCCAAAAGGGCTTTTTCTCCCTAGGTGGACAAGAGCTGCGAGCGACGAA # Right flank : CCCCTATCGGCTCGCTGTGCTCGTCACTTACTGACCTGTCCGAGAAGCAAGCCCATAGGGCACAGCTGAACGGGAAGCAGGTCGTATGGGAAAACGTCCCAAGAACACGAGTAAAACGAAGTGTGATTGGCAGACGTTGACCGCTCCCCCGCATCGGCGGGGGAAGCTAATATTGCGTGATTCTGCGAGAAAACGGCGCGTAACCAAGCCTCCCCTGCGCGAGCGGGGGAGGGGGACCACGAAGCGGTGGTGGGGGCGAAAGGGAATAGCCGCGTGCGGCATTGAAACAGCTCCCGAACAGGCGTAAATGTCCGCTCGAACGTCGCTGCACCACCCGCAAAGCCGCGTGCGGCATTGAAACTATACGTTAACCTCGTGGGGACAGAGGTTAACATAGCTGCACCACCCACAAAGCCGCGTGCGGCATTGAAACTTATCTACAGAAAACTCTGTAGAAAGGCATTTCTTGTTGCACCACCCACAAAGCCGCGTGCGGCATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCACCACCCACAAAGCCGCGTGCGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 5 1062841-1063238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012071.1 Selenomonas sp. oral taxon 478 strain F0592 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 1062841 35 100.0 36 ................................... TTCTCCTTCCTATGTGTCAATGCACATAGCATCTCA 1062912 35 100.0 36 ................................... CTTGAAACCATGAGTTTCAAGGCTTATCTGGTGTTT 1062983 35 100.0 38 ................................... CTTCTGGGCTTTCGCCCTTGACCTTTATCTTGATTGTA 1063056 35 100.0 40 ................................... GTGTTGATAATCTCAAAGCAGATGTCATAGGTCGGACGGT 1063131 35 97.1 38 ..................................G CCTTGCATTCTTCGTGCATGGAGTTACAAACCCTATAA 1063204 35 88.6 0 T...............................GCG | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 97.6 38 ATTTAAGAACCAGAACCCCGCAAGGGGACGGAAAC # Left flank : GCTGCTCCGGAGGAGACGGCTGCCCCCGAGGCACCGGCAGAGGAGCCCGCACCTGCCGCAGAGGAGCCTGCCCCTGAGGCACCGGCAGAGGACGAGGCCAAGGACGCAGAGCGCGCGAACGAGGATCGTCATCGCCGCTTTCTCCTCGGCAAGAAGGCGACGCGCACCATCAAGATGGACAACGGTGTCGTCATCGTCGAGGCGGGCGCGGACATCACCGAGGAAGTCCTGCAAAAGGCGAAGCTCGGCAACAAGTTCATCGAGCTCTCGATGAGCGCACAGTAAATGACATGGATGCGGCGGGGCGATTGCCCTGCCGTGTTTTCTCTTGAAATCTTGCGGAGAATCCCGTGCGCGGGAGAGGAATCCGCGCCGCGCGAGATAGGACGGGGCATACAGCAGATTTTCAAACAAACGGACGCTGCTTTTCGCTCCCGCAACACCTCCGCGCCGCGAAATGGCATTTTCATCCAGATACCGCAAGGCCTCGCACGGCGAGG # Right flank : GTACCTCCAGCCTCTCCCATAGAGATGGTCGTCATGAATATGTAAGAGCGACCATCAAAGATCGCCGTCCACTTTGTCCTGCCATAATGGCAGGACTTTTTCATTTTCTGTGGAAATTACAATATTAAATAATAATGAAAGGAGATGAGTCTATGGAAGATCTGTGTGAGCGGATCGAACGTGCGGCACTGCTGCGTGCCGCACGCATTCTCGCCGAGCGCGCACATCCCCACGCACCGGATGCGGGGGCGGCGTTCCTCAGGGATCTCTGTGCGGGGGATACGGCACTCCTGCATGCCGCCTGTCCAGCAGAGGGCGGCTGTGACATCGGATGGCTCCTCGATGCGGCAGAGCGCATTGCCATGGGGACTGCCCCTGCCGCAGAGCCCGCGGACGACACGCCATCCGTTCATCTGGAGAGCGTGTTCAATCGATTCGGGCGCACTGATGGACGAAAGGAGGGCTTCCCCGTCGGCTGCCTGACCGACGATGCCGCACTG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAGAACCAGAACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 1072113-1072858 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012071.1 Selenomonas sp. oral taxon 478 strain F0592 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 1072113 23 100.0 50 ....................... GAAATTCTCTTCTCCATCTGCGCAACAAGCCAGTCGTAATTTCAAAACCA 1072186 23 100.0 48 ....................... AAACCATCAGCGTTTTTCACGCTTTCAGGGATGCTCATTTCAAAACCA 1072257 23 100.0 49 ....................... TCACAGTAAACCACCAATTCCTTTCTGATCAGGGGTGATTTCAAAACCA 1072329 23 100.0 51 ....................... CCGTAGACATAATACAAGGAAGACTTGTTCTGCGTCGGCATTTCAAAACCA 1072403 23 100.0 49 ....................... AGTCCGATGAAGCCCATGCTCAGTGAACCGTTCCGAAATTTCAAAACCA 1072475 23 100.0 50 ....................... ATCTCCTCTTCCCCAAGAAGATCTTCAAGACGCCCATCATTTCAAAACCA 1072548 23 95.7 49 ........T.............. TTGATATCGTGTGGTGTTACGTTGATGATCATGATATATTTCAAAACCA 1072620 23 100.0 47 ....................... CTAGAACGTCACGCCGTCCATCGTCAGAACGAACGATTTCAAAACCA 1072690 23 100.0 51 ....................... TGCCAAACTTCGATAGGTTGGATAGTCCAGAGTTTCATAATTTCAAAACCA 1072764 23 100.0 49 ....................... TTTCATTTTTTCACCTCCTTTCAGAAAACCAACAAGAATTTCAAAACCA 1072836 23 95.7 0 .....................C. | ========== ====== ====== ====== ======================= =================================================== ================== 11 23 99.2 49 TATCCCCGCAAGGGGACGGAAAC # Left flank : GATACAACGAACTCATCGAGCGAACAACACGCCTCATCGACCCGCACACCGACTCCCTGCGCATCTACCTCCTCGCAAACCACACCTCCGTCCGCTCGTGGGGCGTTGGCGACCGCCACATCGAGGACGTCATCATATTTTAGGGAAACACTGATAAAACAGTCTCTCAGATTGGCGTAGATTTTTTCGTCCGAACGAGGTGGAAAACCGGACGCAGAGTGGTGCTCTGTGGAGGATTTTCCGCCGAAGTGCGGGCAAAAAAGATGCGTCAAGATGGTTGTACCGAATTTATCAGTGCTTCCTTAGGCGGCGGGATTGCGCACATCAGCCCACTGTGCTATACTGGGAGTGAGATCCCCGCCGCACTTAGAGCCGTGGGACATACAGCGGCTTTTAGAACGCAGTGTCGCCGTGAAAGAGAGGGAAAATACATCCGCGCCGCAAAACGGCATATTGAGCTAGGCACAGCAAGGCATCCCGCCGCAAGGATTTCAAAACCA # Right flank : CCACGCACCGAGCCAATCAGCCACACGAAAAGAGCAGCCACATCTCTGGCTGCTCTTTTCGTATTGTCCTTATTAACGTGGTTTTTCTCTTCCCGCGAATATCATCAAAGAAGATGACGTGAAGCGATCTTTTTTGATCGGTCGTATCCGCGAAATCCTATTTTCTTTCGTAAGTGGTATACTATAGGTCGGAGGGGCTCTTTATTAAGACGATGACGACAGGGAGATAAGAATATGAAAAAGAAAATTTTACTGATTGCCTGTATTACTGCGTTAGCGGCCGTTTTCCTCTTGCCGCTTGTCCAGAGCTCGATGGGGAAGACGGATTTTATACGGGAAGTGCTTGCTAAAAATGATGGATTTGCCGCAGAGGGCAGCGGGACAACCGGCGGGGCTGCTGCCGTAGAGGACAATATTTTCCGCGTGACCAATAGGCAGGAGTTTATTGCCGCATTGGGGAATCGCAAAAATACGGAACCTAGGATTTTGATGATTTATGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 1978676-1984649 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012071.1 Selenomonas sp. oral taxon 478 strain F0592 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1978676 31 100.0 36 ............................... GACATTCGCCGCGATATGACTCAACGTCATATCAGT 1978743 31 100.0 35 ............................... AAAATAGGCATAAGAAGTATTTTGACAGGAAGGGT 1978809 31 100.0 36 ............................... AAGGCGTGGTAGGTAGTGATATACCTACCACATGGT 1978876 31 100.0 35 ............................... CGAAAAGATGTCCTATGGTATCGCTACACTGAGGT 1978942 31 100.0 36 ............................... ATGAGATGATGCACGGAATCCGATACCGCGACCAGT 1979009 31 100.0 36 ............................... CTAGGTGGTAGGTATATCACTACCTACCACGCCTGT 1979076 31 100.0 36 ............................... CATTATATAGGGAATTTCTGAAACATGAGATTGAGT 1979143 31 100.0 36 ............................... ACGTCTGCCGATTGTGACATGACCAAGATGATGAGT 1979210 31 100.0 36 ............................... ATAAAGAAAAGGAGAAAAACATCATGCAGAACAAGT 1979277 31 100.0 35 ............................... ATTAACTGGATTAACGAGTGTGATATGAACTACGT 1979343 31 100.0 35 ............................... ATAGTATAATTTTCCCTTCTTTTTTTTGCCGCTGT 1979409 31 100.0 35 ............................... CACGTGAAACATTAAAACAATATTAGAGGTATCGT 1979475 31 100.0 35 ............................... GCAGGATTTAACGGCGGGCGAAAAAAGAGAGGAGT 1979541 31 100.0 37 ............................... ATGAAAACCATATCCCTCATCAACAAAAAGGGCGGGT 1979609 31 100.0 36 ............................... CCCCACGCCGCACGGCTTCCGTGTTCTTGCAAAAGT 1979676 31 100.0 36 ............................... GATTCCCAACAAGCCCTCCATAATTGGAGCAGTGGT 1979743 31 100.0 36 ............................... CAATATTCATCATCTATGTTGCGCACTCTCATATGT 1979810 31 100.0 37 ............................... AAGGAGAGGGAACGTACAACAGAACCCGTCAATGAGT 1979878 31 100.0 36 ............................... AGTTATTGATAATTGTAGCATTCGATTCTCAAAAGT 1979945 31 100.0 35 ............................... CGAGGTGAGGAAAGGCACGTCATATAAACCTTTGT 1980011 31 100.0 35 ............................... ACGAAAGACTATGTAACAAAAGCGGAATTGATCGT 1980077 31 100.0 35 ............................... TTCGTTGTCGATAAGGATAAAAACAAAAATCTGGT 1980143 31 100.0 35 ............................... GACCTCCCGAAGATTGGTAACTTCGGCGTAGATGT 1980209 31 100.0 36 ............................... ATCAAATAACTTTCTCCTTTCAATCCCCCCATTGGT 1980276 31 100.0 36 ............................... CGCCTCGAGGCGTGTCATGGCAACGGCGAGACAGGT 1980343 31 100.0 35 ............................... GCTTTGCCCTCGACCTTCGCCTCCTCGATCGCCGT 1980409 31 100.0 35 ............................... ACCGTCGAGCAGTCGAATCTGAGCCTTGGCGCTGT 1980475 31 100.0 35 ............................... TTTTGTAACGTCAAATATTTTTGCTGATTTCTCGT 1980541 31 100.0 35 ............................... TAAGGACCTCTGGGACTACGAAAACGTTATGAGGT 1980607 31 100.0 35 ............................... GCGCCCATCTTGAGCGCAAGAATGACCTCTGGAGT 1980673 31 100.0 36 ............................... TCCTGCCATTCGCAAGACAGGCAGCTATAAAAGCGT 1980740 31 100.0 35 ............................... GCTCACTATACCTTGTTTAGATGCCAAAAAGCCGT 1980806 31 100.0 36 ............................... AAGAAAGTAACTATGGATGAACTGGTTGAAAAGGGT 1980873 31 100.0 36 ............................... TCGAATATTGAGCAGCAGTCCCTCGAATTCGTGAGT 1980940 31 100.0 35 ............................... TGCGAAAGCGTATGGGAAAGCCCCGCCGCCGCCGT 1981006 31 100.0 38 ............................... AAAAAATACGAGGTTTGGAGTGCGAAGGTGGACGAGGT 1981075 31 96.8 36 ..............A................ TATGAGCCAATCGGGATGGACATCGAAACCAAGCGT 1981142 31 100.0 36 ............................... CGATTGACCGCGCGCACATCGTCGGCCACGGAGAGT 1981209 31 100.0 37 ............................... TGCGTCCATACGGTCTTACGGTGCTTGATGTCAAAGT 1981277 31 100.0 35 ............................... CGCCTCGGAGCAGACGGCGGCGGAAAAGCCCGCGT 1981343 31 100.0 36 ............................... GATACGCCCTCAAGCCCTCCTGGAAGCCCCAGCGGT 1981410 31 100.0 35 ............................... GAAAATATTGGACGGCGATCAACCAATAACGGTGT 1981476 31 100.0 36 ............................... ACTATCACGCGTTGCATACTCAATGCACCCCGCAGT 1981543 31 100.0 35 ............................... ACGTGAAACATTAAGCAATCATGTTGCGCATATGT 1981609 31 100.0 37 ............................... TTGAGATAGAAGAATCCGTCTCCTCCGCGCTTGTAGT 1981677 31 100.0 36 ............................... AAATTCTCGGCGTCCAATCGTGACGTGACCGAGAGT 1981744 31 100.0 37 ............................... AATGCTCTTTTGCGTTGTCTGTACTCTCATTTTGTGT 1981812 31 100.0 37 ............................... TCAAGCGTCACAAGACCGCCCTGCACCTCGCTACAGT 1981880 31 100.0 35 ............................... TCCCGCGAGGACGGCACGCGTTGCTACATCTACGT 1981946 31 100.0 36 ............................... CCTTCCATATATAAGGAATTTCGGAAAATGAAGAGT 1982013 31 100.0 35 ............................... ATCCCGCCCGTGCCCTTGAGCACGAGATAAGCGGT 1982079 31 100.0 36 ............................... ACTCAGACCGTTACATGGGGCATCGACTATCAGGGT 1982146 31 100.0 36 ............................... TGCTATATAATGGTAGGTTTTTGATCAATTTTTGGT 1982213 31 100.0 35 ............................... ATCAGACCGCAGCGGATAAACAAGAGAGCCGTCGT 1982279 31 100.0 36 ............................... TGCGTATTTGAGCGCATCTCATGCGGCGATACTCGT 1982346 31 100.0 36 ............................... AACCTGCATCCGATACGTCGTGTTCGGCTGCAGAGT 1982413 31 100.0 36 ............................... GTGTCAAAGAGCATGGAAAACGCCCCCGACATGCGT 1982480 31 100.0 35 ............................... AGCCCCTTTTCGTCAACCGCAAGATGAAGTGTGGT 1982546 31 100.0 36 ............................... AGGAATACAAAGAGGTATGCAATGCGAAAGCAGCGT 1982613 31 100.0 37 ............................... ATGGAGGAAATTCTGACGGCAAGAAAGGAGCATCTGT 1982681 31 100.0 36 ............................... TTGTGTATTTTTGAGGTATCATCTCAAGTACACGGT 1982748 31 100.0 36 ............................... TGCGGTTTTGCGCCCATATTTCGCTAGATTACGGGT 1982815 31 100.0 36 ............................... AGCTTGCGGATCTCCTCGAACGGAACACCCATCGGT 1982882 31 100.0 36 ............................... TATCCCCGTGGAGGACATTGAGTCGATGGTTAGCGT 1982949 31 100.0 35 ............................... TTACCAAACAAGAAGCAGATAATTTAAGACTAGGT 1983015 31 100.0 36 ............................... GCCGAAAATGCGGCGATAGGTCTGCCCGTCATCAGT 1983082 31 100.0 35 ............................... ATGAGTGACTCGCCTTCGATTTTGTCCTCTGAAGT 1983148 31 100.0 36 ............................... TATCATTTTCCCGCATGGTATCATTATCGCCGAGGT 1983215 31 100.0 35 ............................... ATCATCATCTCGGTCACATCACAATCGGGAGGCGT 1983281 31 100.0 36 ............................... GGCTGGAACGCCGACTTCTACGCCCTTCCCCGTGGT 1983348 31 100.0 36 ............................... GTCATAGCAAGGTGCAGGAGAGCAAGAATGGGAAGT 1983415 31 100.0 36 ............................... ACGCCCTTCCAACGGTGCGGGGCTTGTGCGTCACGT 1983482 31 100.0 36 ............................... TCATCATACTCCTCAGGGCTGCACTGCTCCAAGAGT 1983549 31 96.8 36 ...........T................... TACGCGAGTGAGTGGGGGCTTTTTGCAAAAGACCGT 1983616 31 96.8 35 ...........T................... AGATTCTCCAGCACCGAGATGTATTTGGCAGGAGT 1983682 31 96.8 36 ...........T................... TTCTCCCGCGCCGCATGAGGTAACGCAGGATCGTGT 1983749 31 96.8 36 ...........T................... GCCCGCATGGCGCGGATGCATCAGGCTCTTCCTCGT 1983816 31 96.8 36 ...........T................... AGAAGAGCACAGGCAAATAAGGAGGACATGAACCGT 1983883 31 93.5 36 ...........T.........A......... ATGAGCGTTTGGACGTAGTGGATCGCTACATCGGGT 1983950 31 96.8 36 ...........T................... CCGGCATCGGCGCGGCGAGTTGCATCCGTGCGTGGT 1984017 31 96.8 35 ...........T................... GTAGTTGACGCTGTAATGAGGCTCTGCAGTCGGGT 1984083 31 96.8 37 ...........T................... ATCGCCTCCTTGGCGCAATCAGGGCAATACCGCTGGT 1984151 31 96.8 36 ...........T................... ATGTATTTTGCGTAGGTACTCTTATTGATCTGCAGT 1984218 31 100.0 35 ............................... TTCCGGTAGTCAACGTTATATCGATTCCGTACAGT 1984284 31 100.0 34 ............................... GGGTAACGTCTGGCTGTGGTCACGCGTCAAGGGG 1984349 31 100.0 35 ............................... TCCTCAATGCGCTGGATGAAAAATCCGTCGCTGGT 1984415 31 96.8 38 ........A...................... GCCAACGGAACAAAAATCTGGGTGGAGTGAGATCATGT 1984484 31 96.8 37 ...........T................... TACGAGAAGGGCATCACGGCAATCCAGCGGGCACAGT 1984552 31 96.8 36 ........A...................... TGCTCGAGCGTCAGTTCATTTTGCAGCGCAAACTGT 1984619 31 96.8 0 .............A................. | ========== ====== ====== ====== =============================== ====================================== ================== 90 31 99.4 36 CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : GCCTATCCGTCGTTTCTGTGGAAGTAGGGACTTGCAATGTACGTCTTGATCACCTATGATATTCGTACTGTTGATGCTGATGGGCGTAGAAGGCTGCGGCAGGTCGCCCGCAAATGCAGAGCTTATGGACAGCGTGTGCAGAACTCTGTCTTCGAATGTAAGGTCGACCCGACCCAGTGTAAGCAGCTGGAACTGGCGTTGCTTGATATCATTGATCTGCAGGAAGACAGCCTTCGGTTTTACTACCTTGGTAAAGACAAAGGGCCGAAAGTGACGCATTATGGCGTGAAAGAATCCTACGATTTGGAAGCAGCTATTATCATCTGAGCATTTTATATGAGTGCGAAGGTGAAGTGAACAGAAAATGATATAAAAAAACCTAGGTGCTAGCAGCACACGATAGGAGCGTTTGCTGCTCAGGCATCGAGAAAATCATATTTGTGGCGAGTAATACCCATAAATATGTGGCAAAAGAGGGAAGTCGTAACTTCTTTTGCTGT # Right flank : CTGAAAAATTAGGGGAGCGAATTGTCAAGTCAAGTGCAACTTTTCCTTATAGGATACTTTTTTCACTTGGAATTGAAAAAACTACTGCCTTGTGTCAAAATTGGGTGAGAGTATAGCAATGCAGGGAGGAGTGCAGCAATGACAAATTGGGGTCGGTTAGAGGAAATCGAGGAATAAGCTATGGCAAACTGACTGGTGGGAGGTGTCTGCATGAATTCGGCAGAGAAAGATCTTATTGAATTTCGTTTAACAAGTTACTGCTACGGACCGGATAAATTTCCCACACTAACTGTGGAAATATATATTAATGGCGAGAATTTTCGTGATAAAGTCCGTGACGTAGAACGTCCTTTTGCTGAGGCTGAAGGTAATCCAGGCATAGCAGGTCATGCCACAATAACCCCAAAAGAACTATATGAATCCTTGCATAATGACTATTTGGAATTTGACAGCGTATCTATTTTTGGATGCGGCTGCGGAGTCGTTGACTGTTGGCCGCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //