Array 1 243757-242740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMHV010000001.1 Enterococcus saccharolyticus strain U1902783-1 NODE_1_length_320802_cov_36.019587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 243756 32 100.0 35 ................................ TATCATTTTAACTTACATAAAAATAAAAAAAGGAT 243689 32 100.0 35 ................................ CATCAAATATTGAATAGCTTCTTTTGTCATTGTCA 243622 32 100.0 34 ................................ GCTAACTTAAATCTTTGGGTGTATTTGTAAGCAA 243556 32 100.0 33 ................................ ATGTATGAATTAGACGACCCAGAAGAATGGCGT 243491 32 100.0 34 ................................ AAGCTTGTTATCGAAGCAGTGAGTAGGTTAAAAG 243425 32 100.0 35 ................................ CTTGAGCGTCAGTATCAACGACAAGAATTTTTGCT 243358 32 100.0 35 ................................ ATGTTATTTCCTTCTTTCGTTTATAATTTTTATTT 243291 32 100.0 34 ................................ AGACCTCAAAAACCCAAAGAAAAAACGTAAAAAG 243225 32 100.0 35 ................................ AAAACAAGTCTGTCATCATGTGTATGTCCATGTGC 243158 32 100.0 34 ................................ GTTAACCTCATCTTCTTTAAATTTTATGATTATC 243092 32 100.0 35 ................................ AAGAGTTACTTATTGATTATTGGAATGACGAAGTT 243025 32 100.0 35 ................................ ACGGAAAGCAACTCCGACAGCATTCAACAACTCTA 242958 32 96.9 33 ...........................A.... ATGTTATACTATTATCGCAAATGCAATAATAGT 242893 32 100.0 33 ................................ CCCAGTGATTTTATCGACTTCGGCAGCTTTACT 242828 32 96.9 25 ...........................A.... ATGACAATGGATGCTCATAGACGTA Deletion [242772] 242771 32 78.1 0 ...A..TGT.........AT........T... | ========== ====== ====== ====== ================================ =================================== ================== 16 32 98.2 34 GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Left flank : CCACCATTCTTTTGGAAGTAGGTGATTCATTTTGTTAGTATTAGTAACGTATGATGTCAGTACATCAAGTATTGGTGGTCAAAAAAGATTGCGAAAAGTCTCTAAAGTCTGCCAAAACTATGGACAAAGAGTTCAGAACTCTGTTTTTGAATGTGTTGTTGATGCAGCACAATATGAAGTTATGAAAAATGAATTGATAAAGTTAATCGATAATGCACATGACAGCTTACGATTTTATCGATTGGGTAACAACTATAAATCAAAAGTGGAACACATAGGAGCGAAAGAATCTTTAGATATTGAAGCCCCATTAATTTTTTAGTGCGAATCCTATGCTCCCATAAAATCCCTAGGAGATTCGCACCGTAAAAATCTATTAAAATTAAAAAACGATGAGGAAAATAAATACGAACATATCTATTTTTTTAAATTAATCAGATATATTTGGGCGATTCTCATCAAAAACAAGTCGTTTTCGGCTTGTTTTTCTTATAATCGCC # Right flank : AAAAAAGATAGCGAAAGTTGCTAACAATTGATCTTAGTTAGTCGCGCTCTTTAAAAACTCATAAATCGAATACCCAACGCACCATGGCGATAATTGCTGTGAGTAAATAATAAATATACGTTAAAACACCACGCTATTATATACATCTCGACAAACAATAACTATAGAAATGAAACCATATATTTTAAAAGTTAAACCAACAAATTAACACTGAGGAGTGATTGTATTGAATAACGAACGTTCATTAGCATCGATGCAAGAAGAGGTAGATGCTTATATTCAACAATTTAAAACTGGGTACTTTGGACCGTTGTCTCAAATGGCTCGTTTGACAGAAGAAGTTGGCGAATTGGCTCGGGAAGTCAATCATTATTATGGTGAAAAACCAAAGAAATCCACTGAGGCAGCCAATACGGTTGCTGAGGAATTGGGAGATGTCCTATTTGTTACGATGATTATGGCCAATTCGTTAGATATTGATTTAACAGAGGTCTTTGAAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 317015-313978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMHV010000001.1 Enterococcus saccharolyticus strain U1902783-1 NODE_1_length_320802_cov_36.019587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 317014 32 100.0 35 ................................ CGCAAAATTTAGTGGATTTAATGCAAGCGAACAAC 316947 32 100.0 34 ................................ CCCATTTTATTGAAGGGAATGAATACTTTTAAAT 316881 32 100.0 36 ................................ ATATTCAAAAGATACTTTTAAGTATCTTTAATAAAA 316813 32 100.0 34 ................................ ATATAACCCCCACCCCAAAAGAAAGGAGGATTTA 316747 32 100.0 36 ................................ TTCGATTAGTCCTAAAATCCCAGCCATAGTTGTTTC 316679 32 100.0 33 ................................ CAATTTAAACGATATTAAGCACGCAATAAAGAA 316614 32 100.0 36 ................................ ATTTATTTTTGGGTCTAGTGTATAACCTGTTTCAAC 316546 32 100.0 35 ................................ TATGTTTAAACTATACCGCACTTAAAGTACGGTGT 316479 32 100.0 34 ................................ TGGAAAAGTAACTTTATTACCTTACTGGAAACTA 316413 32 100.0 37 ................................ ATAGCCAACTCCTATAGGTCATCTTCCAAATCATCAT 316344 32 100.0 34 ................................ CGAAGACATTACTAGAGATAGAATTGCAAATGTC 316278 32 100.0 34 ................................ AATTATAAGCCGAAACGGTCTAGATATTTACTTT 316212 32 100.0 34 ................................ AACAGCTGAAAGATAACGACTATGCACCACAAGG 316146 32 100.0 34 ................................ TGGCGAAGCTCGTAAGTGGCAAATCATTGCGTTA 316080 32 100.0 34 ................................ AAATGTTAATGTGTGTACATACTTATTTGGCTTT 316014 32 100.0 33 ................................ CAGGACCAGCTTCACCCTGGATATTTCCTAAGA 315949 32 100.0 34 ................................ GCCAGTTAATTTTAAGAATCCACCAAGCATTTTT 315883 32 100.0 35 ................................ CTTGAGAACGCTCAAGCAAAGCATCTACATCTACA 315816 32 100.0 34 ................................ TAGTAGAAAATCCTTTAGAAATGATTTCGATTGA 315750 32 100.0 35 ................................ ATCATCCCAACTTGTATAAACGACTGTAGCACCAT 315683 32 100.0 34 ................................ AAAGCCACTGCCGAGGCTAGACCCCGAGCGTATG 315617 32 100.0 34 ................................ ATCGACAGATAAAACGAAATAAAACGGCTTAGAA 315551 32 100.0 34 ................................ TTGTCTTCGTCGGTCATAATCGCACGCTCATAGC 315485 32 100.0 37 ................................ TGCTTTGCTTGAGCGTTCTCAAGAAATGGCATGGGAT 315416 32 100.0 34 ................................ AGCGCCCTCTATAGTGTCGTTAGAAGTATCTCTT 315350 32 100.0 34 ................................ ACATTACCGCCAACCAATGAATTATTGATTATCT 315284 32 100.0 33 ................................ GTCCATTAGTTGGTCTGCAACGAGTTCCTTATT 315219 32 100.0 35 ................................ TGCTGACGCTGTACATTTTCGTCTTGTTGCTCTCG 315152 32 100.0 35 ................................ AAATTGTCAAGAAGTGCTACTTATGACGATTGGAT 315085 32 100.0 35 ................................ AAACGATATAAAAGGTTTAAATGACGATGTTGTTT 315018 32 100.0 34 ................................ TATAGTGATAAAAAACTGCGAAGCTTATTGTTTA 314952 32 100.0 35 ................................ TCAATATCTCACTGACTGCAATCCGACGTTTGCCA 314885 32 100.0 35 ................................ ACTGAAAATCAGTGGATTGCATACTATGAAACGCA 314818 32 100.0 36 ................................ CAGATTGTTATCAGTCATAACGAAACACCAGATATT 314750 32 100.0 34 ................................ TTTCTTTTTAACAAATACATAGACCGCACTCACT 314684 32 100.0 36 ................................ GTTGAACCGTTGGTTGTAGCTATACAAGATGTGTTT 314616 32 100.0 34 ................................ TGCTTGCATTGTGTATTCCAATTTACCATTTTCT 314550 32 100.0 36 ................................ TACGGTTGTTATTGGTGTTGCCTAGAACGATTCTAA 314482 32 100.0 35 ................................ GGATGTTGAAGTTATTGTTCCAAGGGGAAAAAAAC 314415 32 100.0 36 ................................ AATTGTTTCGGCTCTAGTGAAAAGTCCTCCATTAAG 314347 32 100.0 35 ................................ TCGATATTGTCTAATCTGTTGTTAATATTTGTAAT 314280 32 100.0 37 ................................ ATGGCGTAGTAACTCCCTGATGCTGGCGGACAAGAGC 314211 32 100.0 38 ................................ AGTATCTTGAAGTTCCCATTGCGATCCATCCACTCAGG 314141 32 100.0 35 ................................ CGGTAAAGTAATCAGAAAAAGTTTTAATGGATAGG 314074 32 100.0 33 ................................ ATTTGGAAACATCCATAATTTTTGAAAGGTCAC 314009 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 46 32 100.0 35 GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Left flank : ATCATAATAAAAAGACTGGATTTCAATCCTATTTTCTAACATTTGAATCAGGCGCTAGAATTGAACTGGCATCAAAACAATTTCTATCGAATCGAGTGGTCGATGCTCTAGGATACACACATGTGGCAATTTCAGTTGGTAGTAAAGAAAAAGTTGATGAATTTGTTGAACAATTTATAAAAGATGGATATCCATTGTTGAATGGTCCTCGGACAACAGGAGATGGCTATTATGAGGCTGTTATCCAAGACCCTGAAGGAAATTTAATTGAGCTAACGGTTTAAGTAAGGCTTAATATTTAGTATTGAATGAAAAAATATTAGTGCGAACCCCAAGCTCACAGAAAAACCCTAGGGGATTCGCACCAAATAAAAGCACAAAAATGATAAAATGATGAGAAAAAATACGATTAAATATGATTTTTCAACTAAAAATCTATCTAATTGGGCGATTATCATCATAAAAAAGTTGAATTTTACTTTTTTTCCTAAAAAATCGCC # Right flank : ATTAAAGGATCAAAACTTATCTCGTATTGTTGCACTCTATAGAAAATAAAAAACGAACTGTCCTATTTAAGACAGTTCGTTTTTTAAACTCTGATTATTCTGCGAGATTGCTCATGACAAAATCAGTTAATTGTTTAGAAATTTGTTCTTTTTGTTCACTTAGTTCTTGCATAATATATGCTTCTAAAACACCAGTCACACCGTAAGCTAGAATTTGTATTTTGAACGCATCGATATGTTTGGCGAAAATTTGTTCTTTTTTCTTCAATTGCTCCATTGTGAATAGGAGCAATTTATTTCTAAAAGAATATGAACCATGGCTACGGAATAATCGACGAAATAGGGCATGGTGCTCATCGAAAAATAAGAACCATTCATAGGCTGAATCCTGCATGCCAGAAGTTTTCATTTTTTCACAACGTTGATCAAGTTCTTCTAAATAGTTATCAATAATGGTATCCATTAAATCATATTTATCAACATAATGTAGATAGAATGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 140217-137981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMHV010000009.1 Enterococcus saccharolyticus strain U1902783-1 NODE_9_length_158994_cov_36.132218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 140216 32 100.0 35 ................................ TAATGGGATTGACCTAGTCAATAATAATAGTGCAA 140149 32 100.0 35 ................................ CAACGTCTACACAATGCAAGTGGAGTGGGCGGTGA 140082 32 100.0 36 ................................ TTTAAAGACCCACGTAGCTTTACAGCGCAACAGAGA 140014 32 100.0 35 ................................ CTAGTTATCATGTATAGTTATATACAGATAGAGAT 139947 32 100.0 37 ................................ ATCAACATGGTGATCAATAGAATTCCGTAGTCTAGCC 139878 32 100.0 33 ................................ GAAAAGACACTGACAGAATCGGGCAAAACAATA 139813 32 100.0 35 ................................ TTTTCCACAATCGGTGATGAAAACGATGATACTAT 139746 32 100.0 34 ................................ ACGACAGCATCCGAAAGCTGACTTTGAATGTATT 139680 32 100.0 35 ................................ GTAACAAACAGACGCAAATGGAAACAATCGATGGT 139613 32 100.0 35 ................................ ATAAATTGTTTACATCTATCGCCGAACAACAACTT 139546 32 100.0 35 ................................ ATAAATTGTTTACATCTATCGCCGAACAACAACTT 139479 32 100.0 35 ................................ CGTCCAAAGTAATTGATTCCGGCAACGTTCCATTT 139412 32 100.0 35 ................................ CGAAATAAGTCAGTCTTATTGTTTCATATCCATCT 139345 32 100.0 35 ................................ CGTTTGCTAGAGCCTAAAGAAACAAGTGATGGTTG 139278 32 100.0 34 ................................ TCGAAAAAGTATCTTATTTAATAACAGAATTAAA 139212 32 100.0 34 ................................ AGTCCACCCCTCATCAGTTTTTACAATTAAATCC 139146 32 100.0 33 ................................ CAAGCGCATATGGAACGACACAGATAAGCTAGC 139081 32 100.0 35 ................................ TTTAACCGTCTAACCACCGTGGTGCGGTCAATATC 139014 32 100.0 35 ................................ TTCCTTGGTATTATACGCATTTGTATATGACCAAT 138947 32 100.0 35 ................................ TTATTGTACGGGCTACGAGAATAAGATCTAAAAGT 138880 32 100.0 34 ................................ AGCTACGAAAATATAGACAACATAAACATACATT 138814 32 100.0 36 ................................ AAGTGCAAGGGTCATCTGTTATCAGCAAAGACGGTA 138746 32 100.0 36 ................................ TAAAGGGTTAATGCAAGTAATTGACCCTACTTTTAG 138678 32 100.0 36 ................................ AAGGGTGGTTCGAATGAATAAACGCCAACGAAGAAT 138610 32 100.0 33 ................................ AGGAGAGGCGGTGAGGCATTAGGTATGGTTGAA 138545 32 100.0 34 ................................ AATTGTTAATGGCTCTGATAGAGGGTTTTTTATC 138479 32 100.0 34 ................................ TAAAATTATCGACTATCTAAACGAAAAAACAGAC 138413 32 100.0 35 ................................ TTGCTTTTAATGTATGGTCTGGCGTAACAGCCAAC 138346 32 100.0 36 ................................ ATTTTTTGACACTATCATAATAACACGGGAATTGTG 138278 32 100.0 36 ................................ CTGATAAATTTAGAGGGAAAAAGATTTCAAAAACAC 138210 32 100.0 35 ................................ ATACCGTCAACATCCCAGTAGAAGCCCGCAAGGAA 138143 32 100.0 33 ................................ AAATATAGATGATGAAGATGAACAAGATATTGT 138078 32 100.0 35 ................................ TGCATTAATTCGGCATCATCTACCACCAGCCCTTC 138011 31 90.6 0 ..................-..C.C........ | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 99.7 35 GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Left flank : TAGATACAGAAATGACTTCTAAAGTAGCAGATTTTTTTGTAAAGGAAGATATCGAAGCACGGATAGCGGAACTCTATCAACAAATTGATGATGCTTTAGAAAACGGTGACCAAGCCCAATTTTTATCCCTGTCTTCAGAAGTGAATCAATTATTGGAACAAAAAGCGTTAGTATTGGATTAATGTTAGACAAAGTCAGAAACTATTGGTTTTTGACTTTTTTCTTTTTAAAGAAATCATTACGTGCAAAGTAGCAGAATTGATTGTATAGTAATAATATAGAGTAGTTGAGAGAAACGAACTATTCAATATTTTATTACGCGGTGCGAACCTCATGCTCCCAGAAAACCCCTAGGAGATTCGCACCGAAAAAAAGAGGTAAAATGAAAAAATGATGAGAGAATAAATACGATTATATTTTTATTATCAGAAAAAAATATAATTGGGCGATGTTCATCAAAAATAAGTAGGGTTTTTGACTTGTTTTACGAAAAAATCGCC # Right flank : TACTTAGGAGTATGCTCTATAAATCATGAACTAAAATATTAGCTAGTAGATACTACAAACTTATGAAAAAACTTCTATTTTATATGAGCATGCGTACTCCTTACAACCAAGGAGGTCTTTATAAGTTTCCGGTACTGTGATTTTTTGACTGCATGTCATTGTAGTATCGTAACACTCGTATCTTAAAAACAAGACTTTCACTAGTCAATCAATTGAAAATGTGCTAAAGTATATTAGACGAATAATAGGCAGGAGGTTCCAAACGTGTATAACTTTATATTAGGAACAGTTATTGTACTTTCAATTATTTTAATTATCGCAATCATGATGCAGCCAAGTAAGCAAAATAGTGCAGCAAGTGCATTTACTGGTGGTGCAGATCAACTTTTTGGTAAACAAAAAGCACGTGGGTTTGAAGCTGTCATGCAACGAGCAACAGCTATCTTGGGTGCTGTTTGGTTAGTATTACTATTTGTATTAGTATTACTATCATCGACTAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3317-1250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMHV010000007.1 Enterococcus saccharolyticus strain U1902783-1 NODE_7_length_163245_cov_32.188152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 3316 33 100.0 34 ................................. AATTAGAGCAAAATTCTTTTGATGGTAATTCCTA 3249 33 100.0 35 ................................. TCTTATACTGTTCAAATGTTGCCATATTGTATCCA 3181 33 100.0 36 ................................. AATCAAGATATTCAAGAGAAGTCGGAAAAGTTTTTT 3112 33 100.0 35 ................................. AGTTCCACGGTTTGGAGAAGATATGAATTTACGAT 3044 33 100.0 34 ................................. TACAATCACCAGGTAACAAACAAGATACTGCAGC 2977 33 100.0 36 ................................. AAGGGTGGTTCGAATGAATAAACGACAACGAAGAAT 2908 33 100.0 35 ................................. CTGTTTACAAAATCGAGAAGGGGAAGTTTGAGTTG 2840 33 100.0 35 ................................. GGACAAGCTTTAAACGTAGCTATACCAGGTATGAT 2772 33 100.0 36 ................................. GGCATCACTAAAAGCTTGCTTGGCACCGTCCCACAT 2703 33 100.0 35 ................................. AAGAATTGATATCCCAACTCGAATTGGTAGAAGAC 2635 33 100.0 34 ................................. AAATAAAAGAAAAGGTGGTAAGTATGGTGATTAT 2568 33 100.0 34 ................................. ACTCCATTCAATATATTGCGGAAACGCAACCGTG 2501 33 100.0 35 ................................. ATCAAGGTGCGTTTGGAAACAAATGGTGCAAGTTT 2433 33 100.0 35 ................................. AGCGTCTTTTTGTAACTGTAGATAGTCTTTTTTAG 2365 33 100.0 33 ................................. TTTAAATGAGGACTTGAAGAAAAAACAAACCAA 2299 33 100.0 33 ................................. CCAACTATTGAAAATCATTTGTACTTGTTCAAC 2233 33 100.0 35 ................................. CTCGTGACCGAAAAGAATTCGATGTAGTTCTTACT 2165 33 100.0 34 ................................. CAGATACCAGAAGCAATTGAGGCGAATATTTTAG 2098 33 100.0 34 ................................. TAAAATTATCGACTATCTAAACGAAAAAACAGAC 2031 33 100.0 34 ................................. CTTGAGAACGTCAAAGGATTGCTCAATCACGAAG 1964 33 100.0 35 ................................. AGCAGCTTCCTCCACCCATACAGCAACGATGTTTC 1896 33 100.0 34 ................................. GTTTGAAACAGGTATGGGAATGATGCCGGAAGTT 1829 33 100.0 35 ................................. CAAGTAAATTATACACCTAGTGATATAGCTATTTT 1761 33 100.0 35 ................................. TTAATTCCATCTGTCACAGGGTCAATAGCCATTTT 1693 33 100.0 36 ................................. TATCAAAAGTAGTTAAGTTGCTTTTAGGGAAAGAAC 1624 33 100.0 36 ................................. TGATGATGGCTCATTACCGTTTAATAAATCATTTAA 1555 33 100.0 36 ................................. CACCATGATTAGGGCATAAGCTAGTCCGATATACTC 1486 33 100.0 36 ................................. TTTTTTACTCCTCAATCAGCATTGCTTTATGACCTG 1417 33 100.0 34 ................................. ACCAACACCACTAATCATCATTTTCTGTTATAGA 1350 33 100.0 35 ................................. TGTGATTAGTTCAGAAACTGTATTGACCGAATTTA 1282 33 90.9 0 ...........C.......A..C.......... | ========== ====== ====== ====== ================================= ==================================== ================== 31 33 99.7 35 GTTACAACCTGTATAGGTTGTATGGATTGAAAT # Left flank : ATAGCCATGACCATCGTGGCATTAGTTGTGCTATGGAAGTATTTGCTACATAAAAATATCATTAGTATTATATGGAAAAGCATGACATATGAATCGGCTCCTTATAAAAGTGAGCGTATGATTGTATAATATCTGGTATAGCGATATTGGTTGGTATCACGGGTTATATAATGAACGAACGTCATTTCTCTGCCAAGAACGGTCAGTAACAGAGATGTTCTAATATGAAGCCCTAATCATTAATTCAGACCAGCTATCACATGGGACTAATTATTAAGATGAAATTTTAAGTTACTTGCTTCAAAAAATAGATAAAATTGCTGCTCCATTTAGTGCGAACCCCAAGTGAACAGAAAAACACTAGGAGATTCGCACCACAATAAAGCAGTAAAATGAAAAAACAATGAGAAAAATCTGCTATATGTCATTGAATTAATAAATTAGATAGTGATTATTTCAGTAAAGAGCATTTTTATTCCTTTTTATTTGTAATAATCGCA # Right flank : ATCGGTACGTGCTTGCATTTTCGAAATGTAACATCCAATATAGTTAATTTATGCAGTACACGTGATTTCTCTAATATTTAATTACAGACTTAACTCTAATCAAAAAAACGAACTCTATTTAACATAAAGTTCGTTTTTTATTTTTTGAATTTTATAAATAAAAGCTTTTTTGTTTTAAATGTTTCGCTGTAATTGTCGATAAATGGCTTTCAATTAGTTCAAAATCACTTTCAGATAATTTCTCGTTAATAGAGATAATCGGAATTAAAAAGCCTAAGTTAGAAGGAGGTTGTGTGGTGTCTTCAAAAGAAGTGGTGCTGAGGATGAGATCGGCAGTGTCAATTTCTGAAGTGAAAGAAATCATATATTTGTTCTGAAATTTGGCAGAGATTCTGAATTGAAGATATTCAGTATACAAAAGCGTGCAATCAGAATGAATATATATATTAACTTTTGGCAGAAATATTTCTTTCGGAACTAAATGAAAGCATAACAGCAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACCTGTATAGGTTGTATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 11518-12012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMHV010000019.1 Enterococcus saccharolyticus strain U1902783-1 NODE_19_length_25086_cov_31.475420, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 11518 32 100.0 34 ................................ TCCTATGTAAGTGGTAAAAGTAATTTAGATTTGC 11584 32 100.0 35 ................................ AATTCGATATCTTTACTCATGACTTTTTCCTCCTA 11651 32 100.0 33 ................................ CAAATTGAGGTATGGGTTAATGATAATGGTAGC 11716 32 100.0 34 ................................ TTATGCTCGTAAATATGCAATGAATGGACTGTAT 11782 32 100.0 34 ................................ CAACATAGCGTTTTGTTCGGCTACTTTGTTTTGA 11848 32 100.0 36 ................................ TTGTAAGTGGCGATGGAGACGTTACAGATGAAGAAG 11916 32 100.0 33 ................................ AATCGGGGATTTTAGTTCCCACACCATCTTTAG 11981 32 87.5 0 .......................A...AC..G | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 98.4 34 GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Left flank : AGAAAGTGAATAAGCCCTTTAACCAACTACAAGTTCATTCTATTAAACGTAAGTATCATATACATAGTGAGTTTTTCGAAAGAGCGATGTTGGATTTATTGTAAACGATTGTACTTTCAGTTAGGTGATAACTCCTCTATTTTATCTAAATAAACTTACTAGATTTATAACAAACATAGAAAATATTGAGATTTCGAAAAATATCATATTAAAACATTTATAAAACTTAGCCATTCCCTTATAATATATATGAGTTTGTTTATTTGGATAAATTAATTGTTACTATAATTGTATAAGAACTGCTTATTCTAGTTTCCAGTGAGTGCGAATGTGATGCTCCCAGAAAATACCTAGGAGATTCGCACCAAAAATAGACACTAAAATGAGATAATGATGAGTAAACAAATACAATTATATTCGTTTTGTAATAAAAAAATATAATTGGGCGAGGTTCATCGAAAATAAGTAGAAGTTTTTTCTTATTTTACTAAAAAATCGCC # Right flank : GCGTATAAAAAGCGACTATAGGAAGCATCCATTTGGATTTTGTCTATAGTCGCTTTTTTGATTATTCGTCGTATCTTTTTCTTTTAGTAGAGCTAGGGATTTTAAGTGCGTCACGATATTTCGCAACGGTTCTTCGGGAAACTTCAATACCTTCGTCATTTAATAATGTCACCAGTTTTTGATCCGATAACGGCTTCTTCTTATCTTCACTATCTACTAATTGTTTCAATCGATTTTTCACGTCATTGGTTGAACGGTCTACGCCTTCTTCAGAACTTAATTTTTGGCTAAAAAAACTTTTTAATTCAAATACACCAAAATCAGTTTCTAGATATTTCCCATTCACTGCACGACTCACCGTTGATTCATGAATGTCTAATACTTCTGAAATATCTTTTAAAATAAGTGGTTTAATAGGGTGTTCTTTTTGTAAAAAGAAGTCTTGCTGACGTTTAACGATTTCTTTACCGACATTATAGATTGTGTCTCCTCGTTGTTCG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCTTTATGAGTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 14682-13827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMHV010000019.1 Enterococcus saccharolyticus strain U1902783-1 NODE_19_length_25086_cov_31.475420, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 14681 34 100.0 33 .................................. TTTCTATGTTTGATGATGCAGATGATGAAGAAC 14614 34 100.0 35 .................................. TTCTAATGCTGCGATTTCACTTTCTCGCGCTCCAG 14545 34 100.0 34 .................................. ATAATGCCATTTGTACGACGACCAGCCGAACCAC 14477 34 100.0 33 .................................. TATCGTTTTTTGCACCTTTAAAACAGCGGTAAA 14410 34 100.0 36 .................................. AAAATGTAGAGCAAATCAACGTGAAAGTTCGTGCCA 14340 34 100.0 34 .................................. GATACTTAGCCAAAGAAATGCAAGCTAATATGCG 14272 34 100.0 34 .................................. GCTAAAATATTAGACGAGCAACGCGCCAGCAACG 14204 34 100.0 34 .................................. CTCGACCTGGCGCTCAAAACGTGCTTTTTCCTCT 14136 34 100.0 36 .................................. AGTTGGAGGCTAGTAAATAATGCAATCAGAACAATC 14066 34 100.0 35 .................................. CGAGATATTAATAACGACAAATATATTATATCAAA 13997 34 100.0 35 .................................. AAGTAAATTGTCATTGATACGACTAATTTCCTTAT 13928 34 100.0 34 .................................. TTGTAAACGGTGATACAGAAGCTACTCTCAAACG 13860 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ==================================== ================== 13 34 100.0 34 GTTATGCTCTTGTAGGGAGCATATGGATTGAAAT # Left flank : TGGTTTAGTAAGACAGCTATTTTGAATTGGGTACCAACTATGCCAACGGAATCGTTTGATTTTACAGTATTTATTAGTATTTCTCTTATCGGTTGTCTATTGATGATAATTGGCTTTTATGGTTATCGCAAAAGAGATCTGCTTGAGGGAGAATAAAGAGGAAAACCATTAGCTTGCTAGTGGTTTTTTCATGCTGTTGTACGAAAGATGCTTCAATATTTAAAAATATAGCGTTAACATGTTTATAAAAATTGTGTATTCCTTTATACTATGGATAGAAAATAGTCTATGTCATTGATTCGATTTTCTTACTTAAGTGTCTAGTGCGAATGTGATGCTCCCAGAAAATCCCTAGAAGACTCGCACCAAAAATAAACGTTTAAATGAAAAAGTGATGAGTAAGTAGTTGCGATTATATTCGATTTATAATTAAAAGATATGGTTGAGCGATGCATATCGAAAATAAGTAGAAGTTTTCCTTTATTTACTTGAAAATCGCA # Right flank : TTCGAATAATGCACCGTGATTTTTTCAATTCGCTTATACTCTTGTATAAGTGCAACCGAGTTATTCGGGCGAAGAAAGAAATATATCCATCATTTCAATCCATGCACTCATAAAGAGTATATTGATTGCACAGTCATGTGTTCTCGTTTATTTACCACAACAAAAGGGAGCGAACTAATTTAATTAGCTCGCTCCCTGTTTTTTAACTTACTTTTCTTTTGGAATTGTTAATTGATTACACTCAATACGCAATCCGATACCATTTTGCGCTTTTCTAATAATTGAAGTATACTGTAATCAACTGAAAGTACGCATCCTAAGGGAATCGAACCCCTGTCTTGAGAACCGGAATCTCACGTGATATCCACTACACTAAGGATGCTGAATACTTTACATAGTTTAGCGGACTTTTAGAAAAAAAACAAGGAGAAATATATATGAAATTTCAACAGCAGTTTTCTCAACAACAAAAACAAACACAAAAACTAGCAATGACTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATGCTCTTGTAGGGAGCATATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //