Array 1 26928-27095 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV837142.1 Staphylococcus sp. HMSC061G12 Scaffold587, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26928 36 100.0 30 .................................... CAGAAGGTATCACATATGTTCATGTTTATA 26994 36 100.0 30 .................................... ATCCAGGTATTGTAGCCCAACAATTAATCA 27060 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCGAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATACAAATGATTACTGAAGGGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGCTCAGTTTTAGAGGTTAATCCTGTAATATCCAACTATACTCTCGGTGATATAATTGTTTTCAATGATTTAGATCTTTATGTAGTTGTTGCATTTTTAAAGTACTGCAAATTAGAGTGTCAACTAGATATTGATCGAACAAAAATTTCTTCAGCATTATCGGCTTATCTATTTTCTTGACTATGATTAAATTATATAATTGTGCTAGAG # Right flank : CAAATACGTCATACGTGTAGAGCGCGTGCAGGTTTTAGTACTCTGTAGTTTTAGGTATAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACTCTGTAGTTTTAGGTATAAGTGATTCCAGTTATTAATGCAGTAGTTTCCTTTGTGAGTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTCGGCTGCAGGCGTGGGCTATGCAGTTTACAGTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTCGAGCAATAGTATTAGTAAGATGCAAGTTAGTTTTAGTACTCTGTAGTTTTAGGTATAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 27253-27484 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV837142.1 Staphylococcus sp. HMSC061G12 Scaffold587, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27253 36 86.1 30 NNNNN............................... CAGTTATTAATGCAGTAGTTTCCTTTGTGA 27319 36 100.0 29 .................................... GGCTGCAGGCGTGGGCTATGCAGTTTACA 27384 36 100.0 29 .................................... GAGCAATAGTATTAGTAAGATGCAAGTTA 27449 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.8 30 GTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTC # Left flank : CTATACTCTCGGTGATATAATTGTTTTCAATGATTTAGATCTTTATGTAGTTGTTGCATTTTTAAAGTACTGCAAATTAGAGTGTCAACTAGATATTGATCGAACAAAAATTTCTTCAGCATTATCGGCTTATCTATTTTCTTGACTATGATTAAATTATATAATTGTGCTAGAGGTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTCCAGAAGGTATCACATATGTTCATGTTTATAGTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTCATCCAGGTATTGTAGCCCAACAATTAATCAGTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTCAAATACGTCATACGTGTAGAGCGCGTGCAGGTTTTAGTACTCTGTAGTTTTAGGTATAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTACTCTGTAGTTTTAGGTAT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 27957-28124 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV837142.1 Staphylococcus sp. HMSC061G12 Scaffold587, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27957 36 91.7 30 NNN................................. ACGATTTTTGCGAGGTTTTAGGCAATGTTT 28023 36 100.0 30 .................................... GCATTCTATGCACATATATCGGAGAAATGG 28089 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTC # Left flank : ACTCTGTAGTTTTAGGTATAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CATGGATTGAACGTACATGGTGCGATAATGGGTTTTAGTACTCTGTAGTTTTAGGTATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTACTCTGTAGTTTTAGGTATAAGTGATTCTGTAACTGATGTAGCACATCATCATAGCTGTTTTAGTACTCTGTAATTTTTAAGTAGCTCCGGCTGCTTTATTTAGTTCATTTACGAATATTCCGCAAAGTTTGTTTAGTTACTGTAAATAGGGTTTTTAAAGAAGGCAAGTTTGGTTACGTTAAAGATGAGTAAACTAGATAAACTTAGGAGGCCTATAATGAGAAAAATCGGTATCTTTTTAACAACGTTAGTTGCGGTAGCATTAATTTTTACTGGAATTGAAGACATTGTGAAAGGTGCAGAAGCTCAAGCAGCTAAAGCAGTTACGGGTGAAG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.70%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //