Array 1 173336-173696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROS010000001.1 Listeria booriae strain FSL L7-1825 NODE_1_length_707701_cov_14.488785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 173336 30 100.0 36 .............................. ATAATTACAAACCACATTTTACTTTCCTACCCGGTC 173402 30 100.0 36 .............................. GCCGCATTACTTGCGGATAAGGGCGAGGGTGAATTA 173468 30 100.0 36 .............................. TTAAGATTCACTCCTCATATCCAGCTAAGAATTTAA 173534 30 100.0 36 .............................. TCTTGATACTCGAAAACGTACTCCGCGTCACGAGAA 173600 30 93.3 37 .................A...........C ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATT 173667 29 83.3 0 ..C.........A....A..-...C..... | G [173694] ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGGGGATTTTCCTCGGGTTTTTCTTTGTGGGTAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGCCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTAAAGCGTTGGTGTGGCTAGATTTGAGACCGTTTTTGGAGGTTGGGTTGTAAGGTTCGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGCACCT # Right flank : TAGATTGCCCACAGATGAAGTGTTTCTATCCATTTTTTATAGAATAAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGTACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATTTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCAACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 344541-342946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROS010000004.1 Listeria booriae strain FSL L7-1825 NODE_4_length_445315_cov_17.862779, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 344540 30 100.0 36 .............................. AAATTATAGTAAGAGAAAGACACGTCCACGTCATCG 344474 30 100.0 34 .............................. CGTGAAATCGTCGAATTTATTTGGAAACGTTTAG 344410 30 100.0 36 .............................. CGAGGTGGAATGCGTAAGATGAATTTTATGCAACGT 344344 30 100.0 36 .............................. AAATTCCTTGTGACCCGCATCAAGTCGGAATTAAAA 344278 30 100.0 35 .............................. ACGAAACTTTATACTTTGCCGCGATACCGCTCAAC 344213 30 100.0 35 .............................. TTGGCAATACAGTTCAAAAGGTAAAGTGGCTGGTA 344148 30 100.0 33 .............................. GTGACACCTTACTTACCATTGCTGAGGTATATT 344085 30 100.0 35 .............................. CCACTTGTGGCGGTAGTACTTGAACTTGAATCAGA 344020 30 100.0 34 .............................. TTTCAAGAGAAATATCCAGAGTATCGAGAATTAT 343956 30 100.0 35 .............................. ACGGCCACAAAGCTAACGGCGTTAACACCCATAAC 343891 30 100.0 36 .............................. TAGAGTGTGCGGCATCTAACAATTGAGCCTTCATAA 343825 30 100.0 37 .............................. ATCCCTTCTTAGCCTCATCGCTTTTAGCCATCTTAAC 343758 30 100.0 37 .............................. AAGTTAATTCAGATACTCGTAACACACAGCTCCCAAG 343691 30 100.0 36 .............................. AGCATAGTTATTTAGCTTTATACGCCCCTCGATAGA 343625 30 100.0 35 .............................. TTCTTTACAGAGTATTCAATTGGTAATTTGTCAGA 343560 30 100.0 35 .............................. TTCACTTCCACAACAACTTGTGCTTGCGCAACCTG 343495 30 100.0 36 .............................. ATTGTATTTTTACATTTTCTTGTTGGGCCTTTTCCA 343429 30 100.0 34 .............................. AGAGTACGAAAATAAATTCATCCATGATACAACG 343365 30 100.0 37 .............................. AACGTACAATTTTCTGGGGTGCAGTTGAACTGGCTGG 343298 30 100.0 36 .............................. ACGACTGGAGCAAATGGTAAAGTAACAGTTTCTGAT 343232 30 100.0 36 .............................. CCAGTATGTCTGTAATGGAGCTCCTGCAAGAGTATT T [343220] 343165 30 90.0 35 TG...........C................ CAGACAGATGCGGCGGCGGCTGAGTTTGAACGCTT 343100 30 100.0 37 .............................. TTGTCTTCGCCTAATGAACCGAAGAGCGCACTTGTTG 343033 30 83.3 27 CG...........C...A......C..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [342977] 342976 30 73.3 0 .C....TC.......C.A.....CA...C. | G [342966] ========== ====== ====== ====== ============================== ===================================== ================== 25 30 97.9 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGACAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGGTAGAAAAATCTGTCGACCTCTAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTATTTTTGAAGTTCGGCTTGTAAGATTTGAGAGCGAGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGACTGCTTTGGCAGACAATCTCTCAGTCTACCAAGCAATGTTCGTAGCCAATAGACTCTACTTTCCAGCCCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTCCCCATTTGGGTTATGAAGTAAAGCATAGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 66783-67074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROS010000009.1 Listeria booriae strain FSL L7-1825 NODE_9_length_115030_cov_14.093377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 66783 30 100.0 35 .............................. TTTGGAATACCTACTTTCCACACTGGAAAACCAAA 66848 30 100.0 35 .............................. AGTCTACAGGAAATTAAAAAATGACGGTACGCGTC 66913 30 100.0 37 .............................. TCACGATAACACAGGCCATTTTCACAATCGAGCGTGA 66980 30 100.0 35 .............................. GAAATAGAATCTGTCTGCGGTGATATATTATCTTC 67045 30 80.0 0 .............C...A.....CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.0 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCTGTCGGTTTTGCCGGCACAACCAAGTCAGTGTTTGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCATAGGGGGAGAAGGGGGGGAGGATGGTTTTCGAGAGGTATAAAAAAATAAACAGATGCAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGCTCCTTTAACAAATACAACGGTGTAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 70322-70609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROS010000009.1 Listeria booriae strain FSL L7-1825 NODE_9_length_115030_cov_14.093377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 70322 28 100.0 39 ............................ ATTCCCTCCTTTCGTCTGTTTCGAAGCTTTTTTTCCTGA 70389 28 100.0 39 ............................ ATTTAAAGTAAATCGCCTGGTATTGCTAATACATCGGGG 70456 28 100.0 38 ............................ ATCCTCTATTACCTGGTAACCAAACAGAAGGGTCTTGG 70522 28 89.3 33 .G.........G.T.............. TGTCGCTGTATCCCTGGTTTTTTAACGCGTCCA 70583 27 78.6 0 .............T..-.G.G...CC.. | ========== ====== ====== ====== ============================ ======================================= ================== 5 28 93.6 38 GTTTTTATCTAAGCAATGTGAAATGTAA # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTCGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTACTAAAGGGGTTAAGCCTATTTTCGGAGTTTGGGTTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCG # Right flank : ACAAATAAGGCATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTAAACAATGGATATCCACCCTCTTATCTATGCCCCATATGTTGAACATTTTTAGCATGCATTTAACACCAATTACCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCGACTATTTGATTTGCAAGGGTAACAGTTTTTGTGTCTAGTACTCTACCATTGGCATCATATGCAGTTAATGTGATATTGTCTGTATTTTTTAAAATCACTCGTTTCGCATAATACT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //