Array 1 344506-344186 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070491.1 Methylococcus sp. EFPC2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 344505 36 100.0 35 .................................... GAATTTCTACTCGGCGCTGGATTGGTCGCAGAGAT 344434 36 100.0 35 .................................... CCTGGGCCAACCAGGCCTTGTTCGCCGCACTCGGC 344363 36 100.0 35 .................................... CCGACTGGCAGGCCCGGCCGCGCCGGGTCAGCCGC 344292 36 100.0 35 .................................... GCAGGGCGAGCAAACCGACCACGGCTCCGCCTGGC 344221 36 83.3 0 ...............C...A............TCCC | ========== ====== ====== ====== ==================================== =================================== ================== 5 36 96.7 35 GTTACCGCGCTCTCTTCGGGGAGCGCTGCGTTGAAG # Left flank : AGCGCTGGCGACCCTGCAATCCGCCACCTGGTCCCGGCCGTCGCGCCTTTGGGCCAGCGCCACTCCGCTGGTGTTGGAACACCGGGTGGGCACCGATGCGCGCCGGGCCGTTGCCCAGGCCATCGCCCGCGCGGGCTATCCCCGGCCGATACGGGTGGAAAGCGGCGTGGTGCCTTATCTGCGGGGAGCCGTGCATGCCAGCGAGACTTATCCGCGCCGCGAACACGACTTGCCCCGGCGCCATGCCCTGGTCGAGTTCGCCGAGCCGGTCACCGGCCCCTTGCTGGCCGGCGGCGAGCGCTATTTCGGACTGGGCCTGTTCAAGCCCCTGCCCTTTGCGCGCACCGGGAATGACTGAAATAGGCGGGAAGTTTCGCGCAGTCCGAAATGCAGTCCGGGCGCGGCAGACCGCGGCCGGGTGATGGTCGGCAACCCTAATACGCCGGCTTCGCGAATCTGCGGCAAAATAACCAAGCTTTCGGAGCATTTGGACGATGCCG # Right flank : CGTTCCGGTTCACTCGTATCGAGGCTCGCCTCCGGGCATAATTTCCGCCAAACGGACGCAACCACTCACAAGGAAAGCCGCCCACGATGACCGCCGCCCCCGCCTTCTTCGACTGGTACCAAACGCTACGGGACCGCGCGCCCTACCCCTGGCAGATCCGCCTGGCGCAAGCGCTGGCGGACGGCCACTGGCCCGACAGTCTTAGCCTGCCCACCGCCAGCGGCAAAACCACGCTGCTGGACACCTGGGCCTGGGCGCGAATCCGGAGTTTCCCCGGCGTTCCCACCCGGCTCTATTGGTGTGTGGATCGCCAGGTGGTGGTGGACCAAGTGGCGCGCCAGGCGGAAACGTTGCGCACGGCAGTGCCCGGCTTGCAACTGGCCGCGCTGCACGGCGGGCTGGACCTTGACGACCCCGGCGTGACCGACCCGCTCGCCCCGGCCGTCATCACCACCACGGTCGACCAATTGGGCTCGCGCCTGCTGTTCCGCGCTTACGGT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCGCGCTCTCTTCGGGGAGCGCTGCGTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 2908510-2900598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070491.1 Methylococcus sp. EFPC2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2908509 37 100.0 36 ..................................... TTATAGGAGCGAAACAACATGGCAACATCTCCCCTT 2908436 37 100.0 35 ..................................... AACCAGTCCCGCAGCCACTGCGGGAGCTTGGTGTT 2908364 37 100.0 35 ..................................... GCTGGCGGCAGGCGCATATTCAGCATCGGTTCCGC 2908292 37 100.0 34 ..................................... TTTAGAGACATGGCTTTCTCATGCCCCGCAGGCA 2908221 37 100.0 35 ..................................... CTGGGCGCCGAGCTAGTCGACATGCGGGCCAGTTA 2908149 37 100.0 35 ..................................... ATGGATACTGTTTTCCAATTCTTTCAGCAGGTTTC 2908077 37 100.0 33 ..................................... ATCGTTACGGGAAATGAAAAACCATTTCCTTGG 2908007 37 100.0 35 ..................................... TTTCCCTGCCGTTTATCTCGCCGATCCTAAAGCTT 2907935 37 100.0 36 ..................................... TCCGGAAATAAGATGTCAGGGAAAGCATCTTCAATA 2907862 37 100.0 33 ..................................... TGCGAAATCAGGCCGAAGTTCTTTCGCGAGTAT 2907792 37 100.0 36 ..................................... CAGGACATTCTCGAAAGCGGCGATGTGTCCATCAAG 2907719 37 100.0 34 ..................................... AGACTGTCCGGCGCGCCGGTGAGGATGCAGGTGT 2907648 37 100.0 34 ..................................... CTGCATTCTATTGGGCTTGGTGACGCCGATATAT 2907577 37 100.0 34 ..................................... AACGAAAAACGAGCCGACTATTCGGACCTGGGCG 2907506 37 100.0 36 ..................................... TCTTCGCGGTCCCTCAGTTTCTCTTTCAGTATCTGT 2907433 37 100.0 34 ..................................... CGTAGGGCAGCTCCGAGCTAAACGTGAGCTCGAC 2907362 37 100.0 34 ..................................... CTTATGGCGGTACGCTTTCTGGGTCATCTTGTTT 2907291 37 100.0 33 ..................................... ACCGCCACGGCCTCGGGCGACGACTACAATCTC 2907221 37 100.0 35 ..................................... CTCATTACTGCCATGCTCATGCTTGGCCTTTCCGG 2907149 37 100.0 34 ..................................... GTCTCGGTCCTCAAGAGTGCCCCTCTGGCCAGTC 2907078 37 100.0 38 ..................................... AAATGTGACATACCGTTTCAACGGCACAGCCTGGAGCA 2907003 37 100.0 34 ..................................... ATGATCGCCCTGCACGATCTGGGCGAGTTCGACC 2906932 37 100.0 34 ..................................... CCATGCAAATCCAATTATGAAAATTTTAAATTTG 2906861 37 100.0 34 ..................................... TTTACCCTATATGATCAATAGCCTTTTTAAAGGC 2906790 37 100.0 35 ..................................... ATCAGCCTGACCGCCATCGTTGTGGGTCTCGGTCT 2906718 37 100.0 35 ..................................... TTTGATTTTGGCACGATCAAGGGCTTTCATGTCGT 2906646 37 100.0 36 ..................................... TTCTGGTCGTCCTCCTCGGTCTGTGCGGTAGCAATA 2906573 37 100.0 36 ..................................... ATTAACGTTAGCCGACAAACCTACCCCGATTCGCGG 2906500 37 100.0 34 ..................................... TTGCCATATACTGTATACGGCCGACATAAAGGAG 2906429 37 100.0 35 ..................................... GGATTCCAGATCGGTATGCGCGAAAGCGATATAGC 2906357 37 100.0 34 ..................................... AGGTGTTACACCTGACGAACTGGCCTAAGTACAT 2906286 37 100.0 33 ..................................... CCCTCCGCACGAGCAGCGCACCTGTTTTGCATT 2906216 37 100.0 35 ..................................... TTGAAAATGCGGCCCAGTGTTTGCCGAGTGCATTG 2906144 37 100.0 35 ..................................... CTTCTGCGCCTGGGGCTCCTCCTGTTCGTCCTGAT 2906072 37 100.0 36 ..................................... AGCGGCCGAGCGACAGAAAAAATGGCGAGAGGCGCA 2905999 37 100.0 36 ..................................... ATTCTGGACGGTACCTGTACCGCGTCCATTGTCGAT 2905926 37 100.0 34 ..................................... GTTGCAATGTCCCGTTTTGCTTTCCTCAGCTTCT 2905855 37 100.0 35 ..................................... ATCTAGCCGACCAGATACGCCGCGTACTGGCCACC 2905783 37 100.0 36 ..................................... ATGGATCACGCGCCAGGCCCCATGCTGGTGGTCCTG 2905710 37 100.0 35 ..................................... GCGAAGACCGGCAATGACACAACGGGCAACGGGAC 2905638 37 100.0 38 ..................................... CATGAGTTAGTCCAGAACCATTTTCCGTTTATTGAGAA 2905563 37 100.0 34 ..................................... TTTTTGCCCGAATCGGCGGAGCAAACGCGCGGCT 2905492 37 100.0 35 ..................................... ATTTACGCAAGTCGAGGCGTACGCCGGTAATTTCG 2905420 37 100.0 35 ..................................... AAGGCGGCGCGACCGCCGTTGATATGTATGTTGAA 2905348 37 100.0 35 ..................................... TCCGGTCGGTTTGGCCTTTATGAAGGCAATCCGTT 2905276 37 100.0 36 ..................................... TCTAAAAGCCGAAATAGCGGACACAATTTCATGTGC 2905203 37 100.0 33 ..................................... CGCGTCGAGGTACGCGTGCCGGCCGGGGCTGAG 2905133 37 100.0 33 ..................................... GCTTTCGTGGGTATGTTCGCCGCTGGCTGGACT 2905063 37 100.0 34 ..................................... TGCCGCGCCGTTTGGTGAGGCGCATGAGATAGAG 2904992 37 100.0 36 ..................................... AGCGTGCCGCTGATGATGGTGCCGCCGCCCAGGGCG 2904919 37 100.0 36 ..................................... TCCCTACGAGGCCGGCCAGGAAGGCGACCCCATGGG 2904846 37 100.0 34 ..................................... ACTCCAGCGGACTCCCGTTGGTCGCCGCTGCCTT 2904775 37 100.0 36 ..................................... AGCCGGCGGTCTCCGTTGCGGATGATGGTGCTATCG 2904702 37 100.0 34 ..................................... TTGTCCTGCAGATAGTCGCGCTCTTTGGTCAGCG 2904631 37 100.0 34 ..................................... ATCGATATCCGTAATAGCGCGATAACCCTGGCAA 2904560 37 100.0 34 ..................................... CGTATATCGTTCGATCAACTGCCCAACCGTCACG 2904489 37 100.0 34 ..................................... TTCGGATCCCACGCGCTCGCGGTTGTGGTTGGTG 2904418 37 100.0 35 ..................................... TCTCGTCGCCGTGCCGGCCGACCCCACCGTCGGGG 2904346 37 100.0 34 ..................................... CTGGTTGGGGGAATTCCAGATGATGATGGCGGCG 2904275 37 100.0 34 ..................................... CCGGTGCCGCTGCTGTCGCCGCCCGCTTTCAGAG 2904204 37 100.0 33 ..................................... ACTTTGACTCCCTTATAGGCATTGTTAACCGTG 2904134 37 100.0 34 ..................................... GTATTTGCCCACGTAGTCCTCCCATAGCCGTTGA 2904063 37 100.0 36 ..................................... TCGCCGGCCGGGGGCGGGGATTGAAGCGGGTCGCGC 2903990 37 100.0 34 ..................................... CGTCGCTTCGACTTCGTTACGGATAACGGCAAGC 2903919 37 100.0 34 ..................................... AATATGAAAGTCATTATTGAAAGTACTGCTCTTC 2903848 37 100.0 35 ..................................... TTTTCATTGGGCTCCGCCTGGGGCCTGCATCCTGA 2903776 37 100.0 33 ..................................... ATGTCAAACGTAATATTCCCATATCAGTTTCAC 2903706 37 100.0 33 ..................................... TTGTGGAACCGGCAACGGGCTCGCGAATTGCGC 2903636 37 100.0 34 ..................................... ACATCGTCAGCTAAGGCGCGGGCCAGTTCGAATA 2903565 37 100.0 36 ..................................... TCGTTGGTGTCCATGGGGTTCAGATCGGCTTTGATC 2903492 37 100.0 34 ..................................... GACTGAGGGCACCTATTATGCCGAGCAGTTATCA 2903421 37 100.0 36 ..................................... AATCGAACCGCAGCGCGAAAGATATGCTGCAAGAAC 2903348 37 100.0 33 ..................................... GTCGAACCATGCACCGATGAGCGCGGGTCGGTG 2903278 37 100.0 33 ..................................... ACTCGCATGCGCCCTCTCTTCGCTCTCGCCTAG 2903208 37 100.0 34 ..................................... ATTAACGCGATGGCGTGGATATGACGCCCAACAC 2903137 37 100.0 36 ..................................... ATGCGTTGTTGCCAGGAGGTCAGGGCGTCGCCACGC 2903064 37 100.0 38 ..................................... GGCCAAAAGTTGGGGCGTGCGGCGAAAGGCATTTTGCT 2902989 37 100.0 36 ..................................... GTGCAAATGCTCTCCAGCCTGGGCGCCCTGCGCGAC 2902916 37 100.0 35 ..................................... ACATGACGCAACAGATCCCGCGCCAACGCTCAGAG 2902844 37 100.0 34 ..................................... ATTGTAACGGTTTTTACTTGTCTCTTTTCCGTTA 2902773 37 100.0 34 ..................................... ACACTGGCGGCGGACTAGCGCCGTGTCAGACTCG 2902702 37 100.0 35 ..................................... ACGCCGATATATCCGCCGGCAATGTAATTCCGTTG 2902630 37 100.0 34 ..................................... AGCGCCGCCTCGGCACCTTTGCGGCGTCTGGCCC 2902559 37 100.0 34 ..................................... TGCTCGGCAGCCTGCCTGGCGGCGGCATCGGGGG 2902488 37 100.0 34 ..................................... TTTCATTTCCCGTAACGATAACCAAAGGCGGGGC 2902417 37 100.0 33 ..................................... GGATTATCTTCGCAGTAAGGGGCGTCGTCGGAT 2902347 37 100.0 34 ..................................... TATTGGTCGCATCGATCCAGGCGCTTTGCCGGTA 2902276 37 100.0 33 ..................................... ATCTCAGTGAACAACGCGGGATCAAACGCGAAC 2902206 37 100.0 33 ..................................... ACTACAATTCTGCGCGGTATTACTATGAGCCAA 2902136 37 100.0 35 ..................................... ATCGCGGTAGCGAACCTGGAACGCGAGAAGAACGA 2902064 37 100.0 34 ..................................... AGGATAATCAGCCTGATATGTAGTCCCGCCCTCC 2901993 37 100.0 34 ..................................... CTGGATCGGGGGCAGTCGTGCCGAGAGTGCGACT 2901922 37 100.0 34 ..................................... AGTGCGCTGATAAGACTTGATAATTTTAAGTTTC 2901851 37 100.0 35 ..................................... GCACCTAACGGCGGCTTTTTCACGTCCGTAGCGCC 2901779 37 100.0 34 ..................................... ACCCGCATCGATGTCACGGGGAACCTGCTTCTTG 2901708 37 100.0 34 ..................................... CACGGCTTCGCCGCTCGCCATAGGCGTCAGCACC 2901637 37 100.0 35 ..................................... TCTCCGAAGGGTGCCCGCTTTCATGGCGTCCAACC 2901565 37 100.0 36 ..................................... TCCATTTTTGCCAGCCGGGCATGATAGCCTGATTGA 2901492 37 100.0 34 ..................................... TTTAATTGCCATTGAGATTAGTTGGGCGTAGGGC 2901421 37 100.0 34 ..................................... GACGGAAGAACTCTCGCCCGAGAGCCAGCAGGCC 2901350 37 100.0 35 ..................................... TCAAGAGAGTCGGCTGCCAGAACCTGTGCTGAATC 2901278 37 100.0 35 ..................................... TACCGTAACGGCGTGCCGGTCTACTCTGGCACCAG 2901206 37 100.0 34 ..................................... GTTTTATGGCCGCTCAGGGTGATCGATGCCGAGT 2901135 37 100.0 36 ..................................... GCCTACTGGCTGCGCGACCGACTGGACGGCACCGGG 2901062 37 100.0 34 ..................................... AAAGCTCCGCCTGGTGCCAATGTTCGTCAATGGC 2900991 37 100.0 34 ..................................... AGGCTCTCGATGGTCAGCAGGGTGCGGCGGTAGG 2900920 37 100.0 35 ..................................... ATGCTTACTGACAATAACCCGTTCTCCGCATTTGC 2900848 37 100.0 34 ..................................... GGCTGTAATCGCATAGGGCACCTCATCGCCGATG 2900777 37 100.0 35 ..................................... TCCCGTCGTCCAGCTCGAGCCGTTGAACCGGTACG 2900705 37 100.0 34 ..................................... CTTTTGGGTCCGCCCGGTACCTCCGTGGGTTTCC 2900634 37 94.6 0 ........................G.........C.. | ========== ====== ====== ====== ===================================== ====================================== ================== 111 37 100.0 35 GTATCTCCCGGCCAATAAGCCGGGAGTGGATTGAAAC # Left flank : TTTAGAGTTACCTTTTAAAGAGGGCGAGATGTTGATACTGGTCTCTTACGATGTCTCCACGGAAACCAGCGAAGGTCGCCGGCGCCTGCGCCGGGTCGCCAAAGTGTGTCTGAATTACGGCCAGCGGGTGCAGAAATCGGTATTCGAATGCAAGGTCAACCTCGCACAGATGGAAACGTTGAAGGCCGAGTTGCTGGACATCATCGACGAAGCGGAAGACAGTCTGCGCTTCTACCGCATCACCGAACCCTTGAGCAAAAATCTCATGGAGTTCGGCAAATTCAAGGCCGTCGATTTCGAAGACACCCTCATCGTTTGAATCGCGCGAACCCCTAGCGATGCCAATTTCCCCGCCCTTTCGCGCGAGCGGCAACCTGTTGAAAACCATAGGCGATAGACGAGTGCCGACTTGCTCTCCTTCTAACTTTGGCCAGACTCGGCCGAACACTCGCGCTTTTCTCGTGAAAAAACCTTTCGTATCATCGTATTGCGGCGATGCC # Right flank : TAGGTGCTGGGATTCCCTTCGGCCATCCCAGCCTACGTTTCTGGCCCCAAGAGTACTCAATGAGGGGCACATCGGGGGACAGAACCAAAGGGAATAGCCACTGAATGGTGAGGAAGCTGGGGGTGAGCCAATGCCGTTAAGTTAAGAGGCACATCGTCACTCCGGCAGGGAATGCCGGGGTCCAGAGGCCAAGGATGGCTGAGGCGTTTGACATCCCTGTAACCTGGATTCCGGCAATCCATGCCGGAATGACGGCTTAATTTAACGGCATTGGGGGACGAGCCGCGGCCCGTTCAGGTAACTTCAGCCCGATTTTCATGAAAACCGGGGGTTTTTCGAGGTGCTCTAAGGTCGCGACCTAAATTGGTGCATGGACAAAACCATAGCAAACTGGTGACAATTCACCGGCACGGATGCCTCTCTTTCATCGTCCGGCAGGCTGTTCGAACCCTTCGTAGGAAATAAGGAACTCATTATGAGATTGTCCCCGCTGTCGCTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCCAATAAGCCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 3 3864946-3873532 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070491.1 Methylococcus sp. EFPC2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 3864946 29 100.0 32 ............................. CCGCAGGCGTGCCCATCGACCTATCCGTTGGG 3865007 29 100.0 32 ............................. GCCTGTGCGGTAAAGCCAAACAGCGTATTTGC 3865068 29 100.0 32 ............................. CTGGCGATCTGCCGCAGCGCCTTGCATGGCGA 3865129 29 100.0 32 ............................. TTCGGGCAGAACAAACCCTTGCCGAAGAACAA 3865190 29 100.0 32 ............................. CACGACGGCCGCGTCATCTGATGGTATCCATC 3865251 29 100.0 32 ............................. AATGGGCCAAAACCAATCCCGGCCTGGGTGTC 3865312 29 100.0 32 ............................. CCGCCGCCATTGCCCGCGTCAACGCGCGGGCC 3865373 29 100.0 33 ............................. GGGCTCATATCAGGCCTTCTGTCCCATACGACG 3865435 29 100.0 32 ............................. ACCTCCGCCGCACTGGCATATCGATCTATCCC 3865496 29 100.0 32 ............................. GCGCGGCGGGAGACGAATACATCGTAAAAGGC 3865557 29 100.0 32 ............................. CAGCTCTCGCGCTACACCGATGCGGAGCTGCA 3865618 29 100.0 32 ............................. CCTTCCTCGCCGGCGCCGACGAAAGTGGTAGA 3865679 29 100.0 32 ............................. CAAAACGGGACATTGCAACAACATCACGCGTA 3865740 29 100.0 32 ............................. TAGGCCTTCCAGAAAACACGAAGGCCTTCAGC 3865801 29 100.0 32 ............................. CCTAAGAGCAAAGATAAAAAGGAACAGCAAAT 3865862 29 100.0 32 ............................. GGATCTTCCGCTTGTCTATATGCTCAGCGGCA 3865923 29 100.0 32 ............................. TTTTGGTATCACGGAACGGAATCCAACCAGCA 3865984 29 100.0 32 ............................. AGATTGTCCATGCGGTCATAGGCGGATGGATT 3866045 29 100.0 32 ............................. CATCCCCAACGTCTGTCGGATGGCGATGTCGC 3866106 29 100.0 32 ............................. TAGCGCCTCGTGGGTGGCCGATATCGCCCAAC 3866167 29 100.0 32 ............................. ACCTACTGGAACGAGTGCTGGTGGAAATGGGC 3866228 29 100.0 32 ............................. CCGGTTGCGCCTTACGATCCATACGCCTTCGC 3866289 29 100.0 32 ............................. TAGTAAAAATCCACGTCTCATGGCACCCTCCT 3866350 29 100.0 32 ............................. CCGACCATCGGTTACGGCCATGTGATGACGGC 3866411 29 96.6 32 ............................A GCGCTCTCGCGGAGCCGCTGGTAGACGAAACC 3866472 29 100.0 32 ............................. CGTCCTTGCATCAGGTGCAGGCGGATGGCGCA 3866533 29 100.0 32 ............................. GCAATGTTGCCGTCCCAGGTCTGGCCCATCCA 3866594 29 100.0 33 ............................. TGGCCGAGCAGTTGGCCGCCTCGGGCCGGCCGC 3866656 29 100.0 32 ............................. TCTACCGGCTGGCCGCCGACCAAGGCCTCGAA 3866717 29 100.0 32 ............................. TGTCCTGCGTGTCGGTGGACTCGGTGAGGAGC 3866778 29 100.0 32 ............................. CGTCAATAATTTCGGCGGTGCGCCATTAACTT 3866839 29 100.0 32 ............................. TGATCGGTACCGCCCGCCTGACCGGCACCGCA 3866900 29 100.0 32 ............................. CGTTCCAAGAGATTCAGGTCGATGCGGCTACA 3866961 29 100.0 32 ............................. GCATACAGCAGGCTCAGGCGCAGGCCCAACAA 3867022 29 100.0 32 ............................. GGGCCGATTATTCTCAACCGCACTCGCAAGGC 3867083 29 100.0 32 ............................. AGCTGGGCAGTATCGAGAACGTACGCATCATC 3867144 29 100.0 32 ............................. GTCGATGGTGTACTTTCCAACAACACCAGGGC 3867205 29 100.0 32 ............................. GTGGACGACAAGGCCCCCGCGCTGGCTGAAGA 3867266 29 100.0 32 ............................. CGTTGAAGGTGAACGTATAACATTAGAACATG 3867327 29 100.0 32 ............................. TATTGGTCCAGGATGGCTTGCAGAGCTTGCCG 3867388 29 100.0 32 ............................. CCGGTAGTCAGCGTGCCGCCCATGGGTGCCGG 3867449 29 100.0 34 ............................. GGATAGCGGTTTCATACCGGCCTCACTTGGCTGA 3867512 29 100.0 32 ............................. GTACTGCCGGTGCCCGCGTAGAAATCCGCGTT 3867573 29 100.0 32 ............................. TAGCCGGCTGGCGGCCCATAGGGCGATGGAGT 3867634 29 100.0 32 ............................. TCGCCGGCCTTGGTGAACGCCTCGCCGGCTTT 3867695 29 100.0 32 ............................. ACGGCCCGCCGCCTTGCGATGGCGAGACGGTG 3867756 29 100.0 32 ............................. CGTCAGGGTTGGGCGGGTAGTGCCGAAGGCGG 3867817 29 100.0 32 ............................. GAGAACCAGAGGTATAGGTGAACAGATCGGTA 3867878 29 100.0 32 ............................. GGAGCAGTCCGGCAGATGCCAGCGGAGCAAGT 3867939 29 100.0 32 ............................. GTCGTGGCGCCGGTAAAGGTCAGGGACCACGT 3868000 29 100.0 32 ............................. TGCTACGCGCGGGCTGCAACGCCAATTTTTAT 3868061 29 96.6 33 ............................A GGCGGCAGGCGGCTGCATTTCAACAGCCCCTGG 3868123 29 100.0 32 ............................. CTCGTGGCGGGCCGCCATGCCTTTTGCGGTTT 3868184 29 100.0 33 ............................. AATTTGCGGGTGTATCAGGTCACGGGCGATTTC 3868246 29 100.0 33 ............................. GAACGTTGAATTTAGCCGGGGCGTTAGACAATA 3868308 29 100.0 32 ............................. CTCCCGGTGGCGCTCCGCGATACGATCTTGCG 3868369 29 100.0 32 ............................. CGGCGGTCAACCCGTACTTTGGCCGCGAGGTT 3868430 29 100.0 32 ............................. CTCTTCTGCGCTCGCCGTTCCCAGGGCGTTCG 3868491 29 100.0 32 ............................. GATGTCGAGGAGTTTCGACAGAATTTTCGTTT 3868552 29 100.0 32 ............................. GACCTTGGTTGTGACTATAACGGTAATACCAC 3868613 29 100.0 32 ............................. ATCGTGCGATAATTTCGGCGCGAGCAGATATT 3868674 29 100.0 32 ............................. CGAACGGACCTGCCGTCGTCAACACACTATCC 3868735 29 100.0 32 ............................. ATAAAATTTCGCCCGTAACCTCGTTCGGTCGA 3868796 29 100.0 32 ............................. CCGGAAATCGACCCCCGTATGAGTTTCAAGTA 3868857 29 100.0 32 ............................. GTAGATTCGCGCACTCTATGTAATAGGGATTG 3868918 29 100.0 32 ............................. ATATCGTCTGAGTTCCGCGACGTTTGTTGATG 3868979 29 100.0 32 ............................. GTATCGAAATACATTGCGGTAATTATTGGGAA 3869040 29 100.0 32 ............................. TACGGGTTGACCGTCGCCTTGGATATGCGCGA 3869101 29 100.0 32 ............................. CAGCGATAATTGCCCAGTCAGCGTGGTGTAGA 3869162 29 100.0 32 ............................. GCTGTAATGCCGCTAGCATCCCTATGTGGTCG 3869223 29 100.0 32 ............................. GCCGTATAAATGCCCGGCAGTCCTCGCTCATC 3869284 29 100.0 33 ............................. GACCTTGGTTGTGACTATAACGGTAATACCACA 3869346 29 100.0 32 ............................. GCATGGAGATCGGAATCTACACTAGCGATGGT 3869407 29 100.0 32 ............................. CAGCGATAATTGCCCAGTCAGCGTGGTGTAGA 3869468 29 100.0 32 ............................. TACTTCCCGATCCCGTAATTGTAGGATTGGAG 3869529 29 100.0 32 ............................. GCGGGCAACGCTCCGGCGAGCTTGGAGGGTGC 3869590 29 100.0 32 ............................. GTGTAGACCGATTGTCCAATGGCGAGGGAAAT 3869651 29 100.0 32 ............................. GTATCGAAATACATTGCGGTAATTATTGGGAA 3869712 29 100.0 32 ............................. CGTACACGGCCTCCGCGCTATCCATGCCGTAC 3869773 29 100.0 32 ............................. TCTGACGCCCAATGCGGCGAGACCGCGCTTAA 3869834 29 100.0 32 ............................. TTGTCGAGCAGATAACGCTAAATGGGCTGACA 3869895 29 100.0 32 ............................. AGGAGGCCTCCGGCACCGAAGCCGAAGACGCG 3869956 29 100.0 32 ............................. CGGACGATCACGTTTGCCCGCTGGGATGGGAT 3870017 29 100.0 32 ............................. ATCGGGCGGAGAATGGCTGCGACGATTGTGCG 3870078 29 100.0 32 ............................. CGTCCGCACGCTATGTCGTTTTCGACGAGGTC 3870139 29 96.6 32 ............................C GGTTCCAGCCGAGCCGGTACTCAGGAGCGGGC 3870200 29 100.0 32 ............................. GCACTTGTCGGCTTCCAGTTGCAGGGCCTCTA 3870261 29 100.0 32 ............................. CCGCCGAGAGCGCCGGGTCGAACCGATAAACC 3870322 29 100.0 32 ............................. CGGCCATTGAAAAGGCCGGTACCAGCCAGATC 3870383 29 100.0 32 ............................. ATCGGCGTAGCAGCGGAATCCACGGCCACAGG 3870444 29 100.0 32 ............................. GCGCTCGATATCGGCGACCGGGAAAAAATGCA 3870505 29 100.0 32 ............................. ATTCCCCTCGCCCTCTGGGAGAGGGGCTAGGG 3870566 29 100.0 32 ............................. CCCTTCGGCGAACTCGGCCAGGTCGCGGCGGC 3870627 29 100.0 32 ............................. GCCATGGCCGCCAGATCGGCCGCGGTGAATTC 3870688 29 100.0 32 ............................. CTCTATGCTGCGCAGATCGGTAAAAGCACCGA 3870749 29 100.0 33 ............................. CTTAACGAGGTGTAACTAGAGGGGGATGATGAA 3870811 29 100.0 32 ............................. CCGCTACCGTTCATGATTTCGTAAGCTAAGCC 3870872 29 100.0 32 ............................. CCAACCTGTTGCATTGGCACATCGTCAATCTG 3870933 29 100.0 32 ............................. ACGCGCTATTGAGGCCGGCAATCGCGTTCCAT 3870994 29 100.0 32 ............................. TTTTCCAGGTCGACTACCAACTGCTGATACTG 3871055 29 100.0 32 ............................. GACATTCCACGCCTCGTGGGAGGCATGTAACA 3871116 29 100.0 32 ............................. CGCGTGCAGTTGTTGCCAGGAAAGAGGCGTTT 3871177 29 100.0 32 ............................. GCAATCCGGCCAGGGTTGACGATCAGCCAATA 3871238 29 100.0 32 ............................. TTTCCGGCAGCTTAAAGAGGTAGAGCTAGAGG 3871299 29 100.0 32 ............................. CTCTTCCACATCGGTACCGATGCCGCCAAGGA 3871360 29 100.0 33 ............................. CGGTTTGGGTTCAGTTCCTATAGGCCGTAGGAT 3871422 29 100.0 33 ............................. TTGATGTACAAGCGCGCCCGCGACGGCCATGGG 3871484 29 100.0 32 ............................. CGGGTAACAGCTAGCGCAAGGTGTCAGCGGAC 3871545 29 100.0 32 ............................. GAGACGGAAAAATTGACACTGCTACGGGCGGT 3871606 29 100.0 33 ............................. GGATGGCCGGCCAAGGCCTGGCCGTTGCGCAAC 3871668 29 100.0 32 ............................. ATGCCGGATTTGAAGGCGTAGAAGATCCTCTT 3871729 29 100.0 32 ............................. AAATGATCGTTCGCCTGGCAGACGCCAAAGAG 3871790 29 100.0 32 ............................. GTACGACGGTAAGCCAGCAGCGGTTCCACGTC 3871851 29 100.0 32 ............................. GTTGACGACGCCATGTCATAGCCTTACCGGGG 3871912 29 100.0 32 ............................. GCGCGTGTCGCTATGTTTACAATCGGGTGCTG 3871973 29 100.0 32 ............................. GCGCGTGTCGCTATGTTTACAATCGGGTGCTG 3872034 29 100.0 32 ............................. TGACGAAGGAGCTTGACGCGTATTTAAGCGAT 3872095 29 100.0 32 ............................. GGCGCCGGGACGTCGTCCGTCCCTATAAAAGT 3872156 29 100.0 32 ............................. CCGTGCTGCTCGACGGTCGCCGACAGCGGATA 3872217 29 100.0 32 ............................. CCGTGAGTGGGCTAGAACCACGGCCCCAAGTG 3872278 29 100.0 32 ............................. GTGCACCGTGTTTGGGACGTGCGCGAGTTTTT 3872339 29 96.6 32 ............................A CGCTGGAGGCAAAGGACGGTAAAGAAGTGCGC 3872400 29 100.0 32 ............................. CGATCGCGGCGAGCCGGCGCGGAGAGAAGGAT 3872461 29 100.0 32 ............................. GGCTCGGGTGGCGGCAGCGAGGAGATTTTTAT 3872522 29 100.0 32 ............................. GTGCGCTTCCGCATCAACAACGTGGACACCGA 3872583 29 100.0 32 ............................. CCGGGCAGACAACAAGAGGAGGCAATATGGCA 3872644 29 100.0 32 ............................. CGCTGTGCGACAAAACCGGAGCGGTCGACATC 3872705 29 100.0 32 ............................. TTGGCCGAGGGGTTAGGGCACCCCGCGTGCGG 3872766 29 100.0 32 ............................. GCCTCAGCCCTCAAACGCATTTTCGCCAATAG 3872827 29 100.0 33 ............................. CGATCTTGTTCTTGAAATGAAGAGGCGGTGACA 3872889 29 96.6 32 ............................C GAATCATGCGAGGACTGATATGGATAACCAAC 3872950 29 100.0 33 ............................. CCCAGGACGCCCGGGTCGATATTGATCTTGTAC 3873012 29 100.0 32 ............................. CCAATCCAACGGGGTTTGCTTGCCTGCCTTGT 3873073 29 100.0 33 ............................. CAAATGATGCCCTACCTCGGGCAACTGGACCTG 3873135 29 100.0 32 ............................. TCGATCGGGCAGCTGTCGGTGGCGTTGGAGGC 3873196 29 96.6 32 ............................T GCTGTGAAGGCCAGGCGAAGTCGAAGCGCCAT 3873257 29 93.1 32 ..............T.A............ ATGTCGCCGGCTTCGAGCGCGCCACGGAATGC 3873318 29 96.6 32 ..............G.............. CCATCGGCGCCACGGCGCTGGCGGCCGATACC 3873379 29 93.1 93 ...C........................T TATTGTTCGGAATGGAGATGATGCAAGGACACGTCCTGTGGCGCTTGCCAGCCCGCCCGTCCTGGGGCGGTCGTTCACGGCCGGGAGCACCGG 3873501 29 86.2 0 ...C.................G...G.G. | CAC [3873506] ========== ====== ====== ====== ============================= ============================================================================================= ================== 140 29 99.6 33 CCGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : GTATTGGCCGCCGGCGGCGTGCAGCCGCCCGAAGCACCGGAAGACAGCGTCGGCCCCGCCATTCCCAACCCCGAGAGCCTGGGCGATGCTGGTCATCGTGCTTGAAAACGCCCCGCCGAGGCTGCGCGGGCGCCTGGCCGTGTGGCTGGTGGAAGTGCGCGCAGGCGTTTACGTCGGCGACTTGTCCAAGCGCATCCGCGAGATGATCTGGGCGCAGGTCGCCGAAGGCATCGAGGACGGCAACGCGGTGCTGGTGTGGTCCACCAACACCGAATCCGGCTTCGACTTCCTCACGCTGGGCAAGAACCGTCGCATGCCGGTGGAACTGGACGGCCTTAAGCTGGTGTCTTTTTTCCCGCCCGAACCGCAGGCCGACCCGCCTCAGGGAGGTGGAAATGCTCTTTAACAATCCGGAAATTTTGTCGTGCAAAAACGCCGTTCAATTCGGTAGAATTCGGACGGCCCAAAAACGCCATTGCTAACAACAAGTTAGAAATGGT # Right flank : GCTCGGCGCTGGCAAAAGCCTGATGCCGCCGCAGCGAGTATCTCTATCGAATGAAGTCGCGATGAGTCGGTTTACAAGCCGATAGCGAAGTTCCGTACCTTTTCTCGGGTGGATGCCGGAATGCGGCCGCTATGCATCTCTTTGGCCACTTCCGCGCATACGTCGGCCACCAGTTCCGTCTGCTCCTCGGTCAAGATCAAGGGAGGCTCTATCCTGACCACTTGCTGGGCGTTTCCGAAGTAGCCCACGTAAACGCCTTTCTCCACGCAACGCATCGCGAACAGCTTGCAGGCTGCGGGATCCCTGGAAATATTGATCTCCAGTCCGATCATCAGCCCGCGGCCGCGTGCTTCGACCAGCACATCCGGATACTGCAGCTGAAGCGCTTGCAGCCTGCCGAGTAGCCTGCATCCCAGCTTGTCGGCGTTGGCCATGACGTCGTGGTCCTCGATGATGGAAATGACCTTGGCGGCCGCCGCCGCAGAGGGCGGATGCCCGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //