Array 1 3614604-3615171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026604.1 Saccharobesus litoralis strain CCB-QB4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3614604 28 100.0 32 ............................ TGTCGCAGCAAAATCCCCAATTTTGTCTTGAA 3614664 28 100.0 32 ............................ ATGATTTAACGAGTGATTGCTTTTTAACACCT 3614724 28 100.0 32 ............................ TTAACTCGCTAACGCGACAACATTGTCGCCGT 3614784 28 100.0 32 ............................ AAGGCGAGCGTTATGCTGTGACGGGCTTTTTA 3614844 28 100.0 32 ............................ ACTGGCGCGGCCTTTGAGCGCCATGCTTTTGC 3614904 28 100.0 32 ............................ ATAATGGCGATGTAATGACAAATATTCTAAAA 3614964 28 100.0 32 ............................ TGAATGCAATTGTAAATTGCTAGAGGGGCTAT 3615024 28 100.0 32 ............................ ATTGCTAATGCGACTCCCGTCGTGATTAAGGC 3615084 28 100.0 32 ............................ CGCCAACTCTGGCAGTACAGCCGATACCTCTG 3615144 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATTAAATTGCCATGAGTAAGTAAAGGCGGTTTGATGAAAACCTATTCTGTACATTTTTCAGACGATGCCTTTAAAGATCTTGAAACTATATACCAACATTATTTATTAACTGCGGATAACACCATTGCTAACCAGTTATTGGATCAACTTGAACAAGCGATTAATTCGTTAAACCTTGACCCCAAGCGAACAAAATTTAATGCCGATTTGTTGCGGGCTGGAATTCAGTTACATGAACTTTTAAGCCAGCATTTTCGAATAATCTACCGAGTTAATGAAACGCAATACAAAGTGTTTATTCTTGTCATTTTGCATCCAAAACAAAGTATCAGTAAAGCATTGTTTCAACGCACGTTACATTAATAGAAAGACCAAAAAAATAGCTCTTTAAAAATTACTTATAAATTCAATAGCTTATTACATAGTTAAAAATTTGGGTAAAAATAGCCAAAATTGATTAACCCTATGTTGTAACTTATTTTTTTGCTAAATTTGCATT # Right flank : ACCCATTTGAAAAAGCAGATACTGTTTCTTCTAATAATTTGGAATTTGACTGTTATGGCTTGATTATTTGTTCGATACTATTTAGTAAATAGTTGTATGACGTAGGTCATACAACTATAATTTGTTTAAAAGTTAAACATAGTGGTTTTTAACATGGCAAGAATTAATGCAAGGTTAGATGACGAATACATGGCTAAGTTGGAAAGGTTAAAAAGCCAAATGCACACATCGACTACAGAAGTTTTAAAATTGGCAATTGACGATTTATATGAAACGCAACTCAATCAGAAACAAGCAAAATTACAAGCATTGCTTAATAGTGACTTTGTTGGGTGTGGTGAAGCCGAGGCTGACTTGTCGAGTCATTATAAATCTTACTTAAATTCAGACCTTTCCAAAAAACATGATAATCGCTGATAGCAGTTATTGGCTGGCTTTGGCCAACACCAGAGATCAGTACCATCAAATCGTGCTAGCCAAAACCGTATCGTTGAACGATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3616830-3617946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026604.1 Saccharobesus litoralis strain CCB-QB4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================= ================== 3616830 28 100.0 32 ............................ GTCTGTTTGGGTATGAGTGTTTATCAGTCCAT 3616890 28 100.0 32 ............................ TATGCTGAATTCAGCACACTTGAACCCAATAA 3616950 28 100.0 32 ............................ TGCAAAGTGCTTTTGATGCCGGTAGCGAAACC 3617010 28 100.0 32 ............................ CAATGTTAAATCACTGGGTGACGAATGGATTC 3617070 28 100.0 32 ............................ GCCCTAGCGGCAACAACCCTAGCCATACTCAC 3617130 28 100.0 32 ............................ GTTTATCGTCAAAACGCATTCGCTTGAGGAAT 3617190 28 100.0 32 ............................ TCATGGATAGATTAGCGCGGGTTTTGTTGAAA 3617250 28 100.0 32 ............................ CAAATGGCACCACTGGCGTGGTCGGTACATAC 3617310 28 89.3 161 .........................GTG ACGAGGAACCGAAACGAAGTTTCGCAGTCCGAGGAAGTGAGGTCATGGATGACCGATGTAATATAGCTTCATGGATGAATCCCATAAAAGAACAGTGTTGAGTAAAATAGGGCATGTTTACCGTAAATGGATTGTCGAGATAAATCTCGACCTGTAAGTAA 3617499 28 96.4 32 ...........C................ CTCAGCCGTTGTTATAATCAATTTATTGTTGA 3617559 28 96.4 32 ...........C................ AGTAAGTGTGTGCGAGTCATCGAAAAGCGAGA 3617619 28 92.9 32 ...........C.....T.......... CTATACTTAAGGCTAAGCGCGGATTTTGGAGA 3617679 28 96.4 32 ...........C................ AGGAGTATCCCCAAGAAATACGGTAGTTTCTA 3617739 28 100.0 32 ............................ TTAATATCACCCGCCAACGCACTACCTAAAAA 3617799 28 96.4 32 ...........C................ ATCTCAACAATCGCTCCCGCTGTATCACCCAC 3617859 28 96.4 32 ...........C................ TTTTTGGCGTTTTGCTCTGATTTGGCTGGTTG 3617919 28 71.4 0 ...........C........AAA.TTGT | ========== ====== ====== ====== ============================ ================================================================================================================================================================= ================== 17 28 96.2 40 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTATCTATGCAGGCACCAAAAGTAGGGGATCAGAAGCCAAGTCTCTCCTACAAAAGGCGTATTATATTGTTTCTTATATGGTTGGAAACTCGCTGTTTGCAATGCTATATAGTTACAAAAATAGTAACTACTCGGCGTGTTTATAAATAGAATTGAATTTCTTCCGCTGGTATAAAAAATTACTGTCATACCTGAGTATTCAGGTATCCAGCGCCTTTATTAAAGTAAACGGAGCTCACGTTTACTAAACAAAGTCACTAGAGTACCGCATTCGCGGCAAAGACGAGGTAATTAGCAATACTAAGGCGCGTAAAACAAATTACGCTGAGTAGATACCAAAAATAGTAGCTAAACCATTAAATACTAAAATAACCCAAGTTTTTTGCTCTTTAATAAATTGATTAAAATCAAATGGTTATGTTCTAGCTGAAAATTTAGGTAAAAAAGCCTAAATGTGACTAATGCGTTGACGCTATTCGTTTTTTTGTTAAATTCGCCCT # Right flank : TTCCCGACATTTTCTGCATTCTCTAACATCCATGTTGATCGCAGCTTAGGTAACGAGGAACCGAAACGAAGTTTAGGTCGTTCTATGTCATCCTTGTCATCACGACATTGGTATGTCCATATACTGCACTGTCCGAGGAAGTGAGGTCATGGCAAGTTGCGTGTTCCCGACGCAACTTAAGTACTGGCATCCATGCCAGCAAAGACCGATGTAATATAGCTTCATGGATGAATCCCATAAAAGAACAGTATTGAGAAAAATAGGGCATGTTTACCTTAGATGGATTGTCGAGATAAATCTCGACCTACACTGTAAGTAAGTTCACTGCCGCACAGGCAGAACATTGTTGCCGATATTTACGATAGTTAATGCAAGCATGGAATAGGGCTGTCAAACTTACAAGGTTTCTGGCATTTTTTGTGTTGCGGCTTGTTGTTTTTGCGTTTCTTTTATCAACTTTTTAGTGGCTAAATGGCGCCATAGTTTTTCTAAAGGTCCAG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.74, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 5170641-5171627 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026604.1 Saccharobesus litoralis strain CCB-QB4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5170641 36 83.3 26 ..T....GT.........AA..............C. CCCTATGTAAACACCTGACGTTTGAT A [5170645] 5170704 36 97.2 25 ........T........................... ATCTAATCCTAAGCTAGAGGCATAC 5170765 36 100.0 27 .................................... GGTATCACAGGTTTGCTGGTGACTTTC 5170828 36 100.0 29 .................................... GTTTGGTCTGTCTGACAGTATTAATTGCT 5170893 36 100.0 28 .................................... TTGCTATCGCCAATGCTAAGCTTGTAGT 5170957 36 100.0 29 .................................... TTTCGGGTCAACCTGATCAATCACATACA 5171022 36 100.0 28 .................................... CAACATTGCTCTATGACAACACATTTAA 5171086 36 100.0 26 .................................... AGTCACCGATATAAGCCGGTGGCGAA 5171148 36 100.0 26 .................................... CGCAAAAGCAAACATGGGCTAAATAA 5171210 36 100.0 26 .................................... TTGCTTAAGGGTCGACTTAAGTACCG 5171272 36 100.0 30 .................................... TGTATCAAAATATGCAGACGGGACAACGAT 5171338 36 100.0 28 .................................... GAAAGGCACGAATATCATGCTGAAGAAC 5171402 36 100.0 26 .................................... TGCGACTACCATTGCCATACAATCAT 5171464 36 100.0 28 .................................... GCCAATAATTCAAAATTGGCCGATATAT 5171528 36 100.0 28 .................................... ATTTAAAAAAGGTATGAACCTTACAACT 5171592 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.8 27 ATCTACAACAGTAGAAATTTAAGCTAAGGCTTAGAC # Left flank : TATAACGGCGACAATATAGGAGTGGATACAACTGCAGTATCCCAGCTGTCCCCGTTAGCGATCCAATTCTAACCACTTAATAAGGAAAAAATAAAATATTGCACAGATAGGAAATGTAATTGTTTGAATCGTTGATACGAGTAGAAGTAAAGAGCCAGAACAATGCCCCTAGACCCACACATTCTTGTTTTTACCGGTACCGTTTTTATTACCCATTCAAGACTCCCTTACAAGCCAAATAAAATGTAGGCTACAAGCAATTTTTATTATCCGGTACAAAGGCGGTAAATCCGGTAAGCCAAGTCAAAGTCATAATTATTATCCCATGATACATAATCTCTTACTGCCATTGAAAAGTGGTCATCGAATACAAAAAACACACCAAAGTATGTAACTATTAGTTCAAGGATGATGCAAAATGGCTGAAAGGCAACTCTAGTAAGGCATACAGCGTAGTTTAAACTTTTGCTATCTAACTTATTTCTAGAAGTTAAAAATTA # Right flank : CAGGTAAAGAGTCAAAAAGCGGGCAACAGCGCGTTTTTCTATCAATTTATCTGTGTTTTCTAACCTTACATTCATCATTTTTAACCTAATTAGCCATTAAGACTGAGGTATGCAATTTTGCTTGCCTAAGCATTAGCAGTTAAAGAGTATCAAATTATGATTAAATCTTCATCGCTATTTTTGGCATAACCAAATTTGGTCATTTTGCACTGTTTACTCATATTAAAAATAATAATACTGTCAGTTTGAGCAAACCTGTCGGCAAACTCACCTTCAATTTCTGCCAACACTATATCTAGCACTCGTTTCGAGTTGGTAATTTCAAAAACAGAGTATTGCAGTCTGCCGCCAAACTTCTCTAAAAATTTGGCAAACTTCGTTCTTAATTTATTGTTTGAAATATCATATGCAACCAGCAGCATTTTAAGGCTCCAAGCTAAACCACGGGTAACCATCAATCGGCTTATCCTGCATGAATGCACGATAATATTGTTGAATGT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAACAGTAGAAATTTAAGCTAAGGCTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 4 5183350-5182962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026604.1 Saccharobesus litoralis strain CCB-QB4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5183349 28 100.0 32 ............................ GGTATCTCAATTAAATGGCCAGCCAAGTAACG 5183289 28 100.0 32 ............................ GGTATCAGCATGATGTTGCTGTACATCACCCA 5183229 28 100.0 32 ............................ TTAAGATGCATACCGATACGTTGCAAACACAA 5183169 28 100.0 32 ............................ ATCAGAATAGATGTTATTTTCAGGATCATTAA 5183109 28 100.0 32 ............................ GGCTAACGGTTCATTGTCGGCTGGGGTATCTA 5183049 28 100.0 32 ............................ TGACGATGGGCACGATCAGCAATTTCACGTTT 5182989 28 92.9 0 ...................G.T...... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACGGTTACGTAGGTGATATGGAAG # Left flank : TTGTTTTTGTGTAAAAGCTGTAATTATCAAGATAACGCTGATGTTAATGCAGCAGTTACAATTTCAATGAAAGGTGAATGGTTGACTACTCAGTTCGATAAAGAACATAAAAAAATGAAAAATAGGTTCTCAGACTGGATCCCTTTACCATCATAGAATGTGGTGCTAAGTTTATTAAATGGGGTTTGGTATATCTTCCGCTCCATTATCTTGGTGTAAAGTGTATGAGCCTATCTTGGCCTTGCTCTACTCTAGGTTAGAAAGTGCTCTCAACCTATAAACAATAGGCGTGTCTTTTGTGAAAGTACATCGTCAGGCGTTGCTCTTAAGCACTGGTTGGCAATTGAGCACATCACTTACAACTTGTTTTACCAAAAAAAATAAGCAAAATTTAAATTATTGATAAATAAGGATGTTTTTTTTCGTTGAATTAAATGGGTATTTTAGCAATATTTTCATTTAAACCCCGCGAACATGGGTTTTAAGAGATTATTTTTATT # Right flank : AAAAAACACGCGGTACTCCGTCTCAAAAACCCAGCCCACGATTACGTAGATTATTTTTAATCTGTTTCAGTTAACCCTTTGTTTATTAAGTGGTTTTTGGTTTTTTTATTCATGTTTTTCTATACAGGTTGTTGAAAGGTATTTAAAATCTTACTAATTTATTCATGAGTAGTAAGGTATAAAAAATGGATGCTCTCAGATTTGTCCCCGATGATTTATCTAAAATAGTAAATGACCGTATTAATCAAATTACTTCCCGTTACGATTCCCTGTCCGAGATTATTGAGCAACTTGATAAAAGTAGTGCTGAGTTTAGGCAGGATATTATACAAGCTTCAAAGGAATGTAAGTTCGAGTATCATAAAATTCAAAAAGATATTCCTGATGAAAAGTTAATTGAGAGTATTCGAACATTTAATCAAAATTTAAATGCTCAAGAAGACATAAACTACTACCAGTTATTAGTAGATGTTCAATTATTTTTTGCTTATTTAGGTTGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACGGTTACGTAGGTGATATGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //