Array 1 467285-467644 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBPE01000029.1 Bacillus cereus strain CH139b_4T NODE_74_length_543091_cov_59.831791, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 467285 31 93.8 34 .........-..A................... TTCGGATATGAAGAAAAAGGCGTAAACTAAAACA T [467296] 467351 32 100.0 33 ................................ ATATAGTATCGGTGGTCCTAAAGGGTTATTACA 467416 32 93.8 33 ....................A..........A CGTGAGGTAAACACAGGTTACGAAGCTAACGAA 467481 32 100.0 35 ................................ TTCAAGTATTGGAAGAAAAACAAGAAGAATGATAA 467548 32 90.6 33 ..........AT........A........... TGTAGATAAAGATAAGAATGATTCACCGCCTGT 467613 32 90.6 0 .........T.T...............A.... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 94.8 34 GTCGCACCTCTAGTAGGTGCGTGGATTGAAAT # Left flank : ATTTCTCCTGTGAAGAATATGTATGTACTAATGACGATATATGTGAAATAGGAACATGTGTAAATTGTGGAGCGAAGCATGAAATTTCTACGTGTGAAAGATGTGAAGTAACATATAACCAAAATATTGATGGTGGAGAATATATCTGTCAAAATTGCTTGGAGCATTATTTAGAGGAATAGGGAATTTGATGTTTAGCTCTAAAAATCTCTCTACAAATTAATATATGTATATAATTCACAAAAAGTGTTGTATTGTATAAAAATACCAATATTTTATAATTATGAATCGAATAGTAATAGATTAACCAAAAGTTATTTTAATTTTTTAGGTGCGAATGTATAGTAAACATGAAATTCCTAGTACATTCGCACCTGGAATTCTCATAATTTATGATTGGAATTTATGATTTTTATACAAATTACTTTATTAAATAAAAATATTTGTATACTTTTGAATAGAATTAACGTATTTGTGGTTGATTTTGAACACAAATCGCT # Right flank : TATCACAAGATTGAGGAAGAAGGGGTTTTTTAGGTAATGCTTTAACTTCAAAACAGTCTTCAGCTCATTAGATACTCAACCCGGAGCATCTATCCCTGCAGTATCTAACACACATGTTAAAAATATAAATTGGAGGGAGATTGAATGACCTACATTGCCCATATCCGCGAGAGTGACAGTCAAGTACAAACAGTTGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTGGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAAGGGATAATATCCGAGATAGTGGGAAACGCTATTATTTCTCACCACGGATACCTTCA # Questionable array : NO Score: 8.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTAGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 474701-475327 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBPE01000029.1 Bacillus cereus strain CH139b_4T NODE_74_length_543091_cov_59.831791, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 474701 32 84.4 35 ....T....CT.G.....A............. CATTGGCGGTAGTTCATAAGTAACAACAAATGGAT 474768 32 84.4 33 .......T.CTAG................... GATGTATTTACGTATCAAGAGTTAATGGACCAT 474833 32 100.0 34 ................................ TCACGAACACTGTTACATTACAAATACAGAATGC 474899 32 93.8 34 ................A.A............. AGAGGGCGTTGATTATGTGTAGGAAAGTAATTTT 474965 31 90.6 35 ......T..........-.T............ CAGGCTGTCGCTTAACGGTGTGGCTGGAGCGTTTT 475031 32 87.5 33 ..........TC..G......A.......... GATAAAGGGTTTGTAATCATAAAAGATATTGTT 475096 32 90.6 36 ...A......G........A............ TCTGAGGGGACACCTGATATGGAAGAACTAAGAGGA 475164 32 93.8 33 ...A...............T............ TATAAAAAAGAAGTATGTTGATTTAGTTAAGCA 475229 32 93.8 35 .........G...A.................. TTAGATTATTTCAATGCAAAAATAGAAGTAAACAA 475296 32 93.8 0 ..................AT............ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 91.3 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATCCGATTGACATTACTAGTATGCAAATTACGAAAAGTGTAATGTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATATTTTATGGAAGTATTCATATGCAATGAGCAAAGAAGATAGATTTTACCAAAGGTGATGCGGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATATTTTAAAAGTGGCTATTATTGATGGACTGTAATGAAGAAAACGTTAGAATAATTGATGGAAAGCGTATTTATTAAAAAGTTAATCAACCATTTATTAAAGAAAA # Right flank : TATTAGACGAGATATATCCGCAGAAGAAGAATTACGTCGCACCTTATATAGGTGCGACTGTAAGGACTGGTAAGATGCTTGATAGTAATTTAGTGTCTCTGCTGGAATAAGAGGACCTGTTTCAATTCATACAGCTGATCCAATTGACATTACTAGTATGCAGATTACGAAAATTATAAATTCTGAGCATGAGAAGGATAAAGGTTCAGATACAATTGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGGTGCAGAAAAGATTAAAAATGAATTGGTTACATTGTTTGAAAATGATGCATCAACAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGAAATCATAATTCAAAACTTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGATGAACCAAAAACAATTG # Questionable array : NO Score: 6.54 # Score Detail : 1:0, 2:3, 3:3, 4:0.56, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 475962-476456 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBPE01000029.1 Bacillus cereus strain CH139b_4T NODE_74_length_543091_cov_59.831791, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 475962 32 84.4 33 ....T.T...T.AC.................. CCTCAATGGGTGCAAATGGCCTTTGACATGATG 476027 32 90.6 33 .........T..A........C.......... TTACAAGCGGTACTTATAGCCCTCAGGGTTTAT 476092 32 90.6 34 .........T.........T........G... TTTTGTCATCACATCGTATTTACTGTGCATGCTG 476158 32 84.4 35 .........TT..AT.T............... TCTTTGCAGGTTTGGGAAAAAGGAGAAGTATTAAT 476225 32 87.5 34 ......T...TA........A........... TATTAAACAGATGCCATTACCTTATAAACAAATT 476291 32 100.0 35 ................................ TTGCTATTACTAATCATGTTGGTGTTAACCTTCAA 476358 32 78.1 35 ..A.A.....CC....C..T...A........ ACTGGAAGAGGGAGATTTCGGTGCTGCTTTATCAA 476425 32 90.6 0 ..........TA........A........... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 88.3 34 GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Left flank : TGATCCAATTGACATTACTAGTATGCAGATTACGAAAATTATAAATTCTGAGCATGAGAAGGATAAAGGTTCAGATACAATTGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGGTGCAGAAAAGATTAAAAATGAATTGGTTACATTGTTTGAAAATGATGCATCAACAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGAAATCATAATTCAAAACTTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGATGAACCAAAAACAATTGATGATTATACTGTATTGGTACATGAATCAGATGATTTAAAAGTTGAGATTATTAATGGAATGTAATAAATAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAGGAGATACTCTATCAATTTATTAAAGGAAA # Right flank : TTACTATTAACTTTTATTGTGTTATTCGTTTTGATCACACTTCTTGTTGATGCGTGGATTATGACTGGTAAGATCCTAGATATTAATTTTGTATGAGTTTACGCATTACCCGACATTCAACCCTCACTTACCTTTGGAATTTCGTCCTTCACAAGCTTGAGGAATAAGACTTCTTTTGGATAATGCGTTAATTTTAATTGATATTTCTTGAAATCTCCAATGTAATTATGTAATATATAGGTATATTGTTAGTTTATTTGATTCCGTTTATTCCCACACCTTATGTGTTGTGGTTGAGTTGTAGAAGCAAGTTGCGTCTTGTTTCAATTGTGAAAGGGCTTCTTTGAGCCGATTAGTGTATATATAGCTTATTTTGCTATGCACATTATTAATCGACTTGAAGAAGCCCTTTTTGTGTTGTTTTCAAGTTTGCAGGCGGGGTTATGTATCATGACATAGCAAATTACAAAATAGAGGAGATATGAAAATGAAAAAAGATT # Questionable array : NO Score: 6.46 # Score Detail : 1:0, 2:3, 3:3, 4:0.41, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //