Array 1 463502-465185 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLH010000001.1 Listeria innocua strain H3290 NODE_3_length_470561_cov_59.4762_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 463502 36 100.0 30 .................................... TCTTGTTCTTCTTTCGTCAACTCTCTTGTT 463568 36 100.0 30 .................................... TCTATAAAGACAAAGCTGTTATTGTTTATG 463634 36 100.0 30 .................................... TAGACGCGTTCATGATGTGGTGGGACGAGT 463700 36 100.0 30 .................................... GTCATTCCAACGAATTGCATGAAGGCAGTT 463766 36 100.0 30 .................................... CATCTTTGTTCCTCCTCCGATATTTTTACG 463832 36 100.0 30 .................................... GCTTAAACGAAGATATGAAAAACACAGTAG 463898 36 100.0 30 .................................... ACATCATAGCTCATTTATTACAGCTACCGC 463964 36 100.0 30 .................................... CGTCATGTTCTAACTTTAAGTGTTCTTTCG 464030 36 100.0 30 .................................... CATTTTAATCATCATCCAGACCAACTCAGA 464096 36 100.0 30 .................................... TTAAAGGCGATCAAGAAACTATCGTCGATG 464162 36 100.0 30 .................................... TACTTCATTTTTAGATATACGATTCCAAAT 464228 36 100.0 30 .................................... AGGCGTTACATGTTATTCACAGAGCTATGA 464294 36 100.0 29 .................................... CAACGCCTGTCAAAATGTATAAGGCGGGG 464359 36 100.0 30 .................................... TAACAGGGATTTATTTAATAAAGTTGCTGA 464425 36 100.0 30 .................................... CTAGTAACAGCTTCACTAGATTCACCGGTT 464491 36 100.0 30 .................................... GCGGTTCGGCGTACAGACGCTGACGATATC 464557 36 100.0 30 .................................... GCGACTCTGGAAGGCAAAAGATGCAGGTGA 464623 36 100.0 30 .................................... AGACCAGTTAGCTCAGTACCTACTATCCAA 464689 36 100.0 30 .................................... TACATATCATTCCATTCGAAAGTGTTGTAA 464755 36 100.0 30 .................................... TCTATTGAAGTGAAATGTTATTTTGCCATA 464821 36 100.0 30 .................................... TACAGCAATATCTGGTCTAACTGTGACCCT 464887 36 100.0 30 .................................... CTCGAAAACAGTCACACGTTTATCCTTTCC 464953 36 100.0 30 .................................... CGGATGAATTGTTTTATCGATGTTGTAACC 465019 36 97.2 30 ..........................T......... GCGGCGAAGGGAGGTTTGTGAATTGGCTTC 465085 36 97.2 30 ............A....................... GGTTTATATTTGGTATAGTGAAAAATAAAA 465151 35 88.9 0 ..............C..........A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCAACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAAAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CCATCTCTTAACCTACTCCAACTAGAAAAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACATTCGAAAATAAGACAAATTATATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCGAACATTTTAACCCAATTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATTATTAAAAATAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //