Array 1 50326-50476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHT01000013.1 Streptomyces sp. NRRL F-5053 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50326 29 96.6 32 .....................G....... GCGGGAGAGATGCAGGTCGCCGCCGTCATGCT 50387 29 100.0 32 ............................. CGGGGGGAGGCGGTGTCTGGCGCTACGGGTAA 50448 29 86.2 0 .............A..T.....C..C... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TGGCCTGGCGATGCGCCCTCGCTCGGCCACGCGGCCGACGCGGCGCCACGGGGACGCTGCCCGGGACCTGTTGGAGGCGGAGAGGCGCGCGCCGGAGGAGGCGGCCCACCCTTCCGCGGTGCGACTGGTCGGCCGGTTGCTGGAGCTGGTGCCGTCACCGGGGCCGGAGTTGTGCGGCCTCGCACAACGCTGTGGACTCCCCGCATGACGCGGCCCGCCCTCTATCTGATCGCCTGCGCGGCAGGCCCGGCCCAGTACCTCGACGACGGCGTCCGCGCCGCGCAAGCCGCGGGGTGGGACATCTGCCTCGTCCTCTCGCCGACCGCCGCGACCTGGTGGGGCCCACTGGTACAGGGACGAGCACCCGACTCATGTCCCTGCCGAGTCCATTTCCTGGCATGCTGATGCCGTGCTGAGGGGAGGGCGCGTCCGAAATGCCGGAGTCGCAGGAAGTGATGGAAATCCGCACTCCGGCCCCAGAAATCCCCCGGTCAGCAAGT # Right flank : CCCGAACCGCCGGGGCTGGAGCAAGACCTGCCCGCGCTCGCCGGGCGCGTAGGTCGCCGGACCTTCCCTGGGAGCGCGGTGAAGGCTCCCAGGGAAGGGCTCCCGCCCCGACTCCCTTGCCCCGCACGGCACTTGAAACGCTCTCACTTGAGCGGCAGCGGACTCTGCTGATAGGTGTGGAGGGGGTCGCGGAGGGTGCCAGGGTCCTTTGGGGTAACTGTTTTCGTGAATTTCTTCACATGAGAAAGTGCCCGCTGGAGGGGTTCTCCGCCCCGGAATCCAAGGTTCCAGGGGGAGTTCGGGGGGTCGATTGCCCCGTCGGGTGGAGCGGCGCGAGGGAGAGGTGCGGTCGGCTCCGCAGTGGTTCAGTCGGGGGGTCCGGGATCCCTGCTGCTCAAGGGGTGCGTCAACGGCTCGTGGGGCCGAGTGGTTCCCCCGGCGCGCTGTGGGGTCGATCACGGGGCGGCGGAGTGTAGCAGAGGGTGGGGGCATCCTTGTGA # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 100624-100415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHT01000013.1 Streptomyces sp. NRRL F-5053 contig13.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 100623 26 85.7 33 ..........--...T.....G...... CTTCTCACTGGGCACCTTCAGGCCCGACTCGAC 100564 28 100.0 33 ............................ GTTGAGGTGCCAGGCGCGGGTTTCGCCGGTGTA 100503 28 100.0 33 ............................ CAGGGCCTGTCCGCACCAGGCGACAGGCAGGAC 100442 28 67.9 0 G.................C..GGCTGGA | ========== ====== ====== ====== ============================ ================================= ================== 4 28 88.4 33 ATGCTCCCCGCACGCGCGGGGATGGTCC # Left flank : GATCGCTGAGCACAGCTTCCGCACGGCAGTGATCGGTTCCGTTCTCGCGATGATGGAGGGCGCCGACCCGGGCAGGGTCGCGCTGCTGTGCACCTTCCACGACACGCAGGAGACCCGGGTCGGTGACATTCCGTGGATCGGGCGGCGGTACCTCACGGCGGCGAAGAACGAGGACGTCACCCGCGACCAGGTCGCCGACGCACACCCGAAGGTCGCCGCCGGCATTCAGGCCGTAGTCGACGAGTACGAGAACGGCGACTCGATCGAGGTACTCGTCGCTCACGATGCCGACAAGCTCGAATGTATGATCCAGGGTCTTGAGTACCTGGAGCAGGGCTACCGGAACGCTCGCGAGTGGGTCGACAGCACGCGAGCGAAGCTCAAGACGCCGTCGGCGATTGCCCTTGCTGATGCGGCACAGAACATGTCCTCGGTGGAATGGCAGCGCACCTATCTGCGGTAGGTGACGCGAAGGCGCCGAAACCTGCTGGTCAAGAACT # Right flank : CATGACGAAAGTGCCCCCGCCCGGCCATGTGTGGCCGGGCGGGGGCGTTGTCAGCGTGTGAAGTCGAGTAGTGCCAGGGCGAAGGCGTCGACGCTGGTCGGCTCAGCCAGGGACGGGAGGAGTCAGCGGGCCCGCTCCAGTGTGCGGAGCTGGGACTCGTGATCGGCGAGACCGTCGCCCCGCTCGACCGCATCGAGCCGCGCGTCCTGCCGGTCGAGGCCCTGCTCGGGCTCGGTGAGCCGCTGCTCGGTCTGATCGGGGCGCTGCACCAACAGCGCCAGGGAACCGGCCTGTTCCGCGAATCCCACCTCGACCACACGGCGGATGCGCTCCATCTCGACGGCGACCGCGGACGGGTCGGACGGGGGTGGGGCGGTGCTCACGGGGCGGTCTCAGTCTCCTCGTCGACGATGCGCCGAGGCCGAACCGGTCGAGCAGCCGCTCGACGGGCGGGAGGGCCATGACGCGGGCGAGTCCGCCCGCCACGGCCAAGCCCTCGG # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCACGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 155299-155449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHT01000013.1 Streptomyces sp. NRRL F-5053 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155299 29 100.0 32 ............................. AGGCCCTTTGCGGTTGAGGTGGCGGTCGCCTC 155360 29 100.0 32 ............................. CCGTACATGCACGACCGCATCCGCAAGCAATC 155421 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGCTCCCCGCACGCGCGGGGGTGGTCCC # Left flank : CCCGGGGCGTGATCTGCCGGGGCGTCGTTGGTGCGAGGAACTGCGGTACTGCCGGCTTGTGATTGCTGAGGACTGGCATGCCGAGTTGCGGCTCGACGACGCCGACAGCATGGCCACCTACTCGCGCGTCTGGCGCACTCTGCCGGAATCCGCCGTGTACGGCGCCGACGCACACAACGTGATCGATGCGGCACGGCGGGACCTGAACGCCCGCTGAAGGACCTTCGACCGGCGGGACCGCGTCGCGCTGACCGAAGGGCCGAGCCCTCAACAGCCCGACCACGCCCACCGCCACCCGCACGAACGCCACCAGCACAGCCCACCGCACCCACCGCTCCGCCTGCTCCACTGCTGCCTCCCCTTGGTCATTGGCAGGACCGTACGCAGGACTGGCTGTCGGGCGTCGTGAGTTGTCCACAGGCGGGCAGGTAAGTCGTACCGGCAGCGGCGAGGTGATGCTGAATGCGTCGTTCCGCGGGTAGCGTCGCTGGTCAGGAAGT # Right flank : GACGCAGCGCCACCCGTCGACTTTGATCTCGTAGGCGACATCACCGCGGGGCAGGTCCTCGACCGGGGCGGCCAGTATCGGCTCAGGGACACGCACACTGCCAGCCGTACCCGGCGCTTCATGGGCCCGTACCGCCGGACGGGCGGGGCCATCACCCCTGGCCGCAGAGCACCGCCTGCACGGCGGGAGCCGGACTCACCCCACTCCCGACGGGCACCGGCTCGGCGACTGGCTGAACACCCAGCGAGTGGAAACGCCGCAAGAGCAGACCCGATCCTGCAACTGAGGGGAGGAGGCGTTCTTGGAGGGTGAGGCGTTCGAGGACGCCGCCACCGACGGCATCGGCCTGTGACGCTGGGACGCGTACTCCGGGCGTTCACCGGCGCACGGCGCCGGTGAACCCGGCCGGTCAGCACCTGACGGGCGGTGCGCCTTCCGGGGCCTGCAGCAACTCCTGAGGCAGGTAGGCGGACCGGGTGCGCAGATGCCATCCGTGTACC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97265-96932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHT01000023.1 Streptomyces sp. NRRL F-5053 contig23.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 97264 28 100.0 33 ............................ TCGCAGTCTCGGGAGGTCGGGGAGCCGGAGTCG 97203 28 100.0 33 ............................ TGGGCACTTCCACTTCGCGGGCCCGCCGGATCT 97142 28 100.0 33 ............................ GTTCGAGTTCCAGCGCCGTGGAGCCCCGCACAC 97081 28 100.0 33 ............................ GCGTTCCGCCGGGACCCCAGCCGGACCCTGCGT 97020 28 100.0 33 ............................ GGCCGTGTTCTGCCACTTCGGGCGGCCTTCCCA 96959 28 85.7 0 ......T..........C......GG.. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.6 33 CTCGGCCCCGCACGCGCGGGGATGTTCC # Left flank : CGGCAGCACGGACCTTGTGCGCACCCGCCTCATCCATGGATTGGTAAGCCGGCGTCGCCTTCCCCACGTCGTGAACGCCGCACAACCACATGAAGAACCGTCGTCCGTCCCCGCCCGAGATCCGGTTCAACATGTCTCGCACGCTGGGGGCGAGGAACTCCTGCCACATCATCTCGGCCACCGCGGCCGTATCCAGCAGATGGCTGATCAACAGATTCACCCGTCCGCCCCCGTACGCGGCGGACTTCCCCCACAGCACCCCCAACTGCCGCAGGCACGACGCCTCCAGCCCTGATCGCCTCGCCACATCCACAGCCGAGACCGAACCGAAGCAGGGCGAAGACCGCGACTCTTCACGTTCCGCGTACATACCCGGATCGTGGCACAGGGGACTGACAGCGGAGACTGATTACGGCCCACCTGAGAAGCCGGCACGAAGGGGTTGACTCCGACTGAACGAAAACAGCACGGTGGCTCGATAAAGTGGCAGGTCAATCAGC # Right flank : TCTCCCCGGGCCCGGTCTTGCTCGGGTGCTCATGTGTCAGGCACGAGAAGAACAGCTCCTGTCGTCCACGGGGTCAGGCAGCGCGCAGGCCCGCGCTCAACCTTCCGCCGGCCCCGCGGAGAGTCGCAGCGAAGCGGCAGGAGCGCTGAAGCAGCCGTCGGCCCTCGGGCGTGAGGCCGAGACGAGGGGAAGATCAACGAATTTGGGGGCTGCGTCCCGGGCTGTGATCTGTAGTCGCAAAAAATCCTGGCCGGGATCGACTCGGCCAGGATTGTGAGTGGAGCCTTGAGGCTCTTGTGTGTCGGGAGGGGGACTTGAACCCCCACGCCCTGTAAAGGGCACTAGCACCTCAAGCTAGCGCGTCTGCCATTCCGCCACCCCGACCGGGTGTGCCGCCCGGTGCGCTGTGCGCCCTGGCGACGGGTTAAACCTTAGCACTGGTTCGGGAGTGCGATCACCCGCCTCTTGGGGTGGGCGGCGGGGAGGAGGAGACTGGGGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCACGCGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 106894-107471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHT01000023.1 Streptomyces sp. NRRL F-5053 contig23.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106894 29 93.1 32 .....C......................C CATCAGGGCAACGTTGCGCGGGGGGTTGCACC 106955 29 96.6 32 .....C....................... GTGCCGGGCTGCTCCACGGACCACCCGGTGTG 107016 29 93.1 32 .....C......................C TCGCCTCCGCTCTGCACGCCGCGTACGTCCAG 107077 29 100.0 32 ............................. CCCATCGACCTGCCGCAGGCCGCCGCCGACTG 107138 29 100.0 32 ............................. GCGCGGCAGCGGACCGGGCGGCCTCGTACCTG 107199 29 100.0 32 ............................. CGCCACCCGGCCCCGTGCTCCCGTGCCTGCTG 107260 29 93.1 32 .....C......................T ACGTTCGACTCGCGGATGTACGGGATCCTCGC 107321 29 89.7 32 .....C.......A......A........ CCCCACAGGCCGTGGACGGAGACGGCGACACC 107382 28 89.7 32 .....C...........-..........C TCCCCTGGGGTGAGCTCCCCTTGGGCTACGAG 107442 29 86.2 0 .....C........T........C.C... | A [107461] ========== ====== ====== ====== ============================= ================================ ================== 10 29 94.2 32 GTCGGTCCCGCACGCGCGGGGGTGTTCCG # Left flank : GTCAACGACATCAGTGAACTCCTGATGCCGGACTCCCCCGACCTCGTCGACCGTGACACCAACGCCCTCTGGGACGAAGGCGACGCCACCGTCAGCGGCGGCACCAATTGGGACGACGGCATCTTCGACGCAGACAGCTACCTGTCCGTTGTGGGGCCCGAGTTCGCCTCACCATCGGCCTCGGACGGAAAGCGACGTCCCGGATGACCGTCGTGGTTCTGATCGCCGCCCCAGAGGGACTACGCGGACATCTCACCCGCTGGATGGTCGAAGTAGCCGCAGGGGTCTTCGTCGGCTCACCCAACCAACGCATCCGCGACCGTCTCTGGACCACCCTCGCCGACCGCATCGCCGACGGCCAAGCCGTCATGATCGAACCTGCCAAGAACGAACAGGGTTGGTCCACCCGCACCGCCGGCCGCGACCGCTGGTATCCGGTGGACTTCGACGGACTGATGCTGATTGCGCGTCCCCGCCAGTAAACTCCCAGCTCAGCAAGT # Right flank : GACCGACCGCTACGGCTGCGCTCGGGCTCGGCTGTCGGCCCCGCAGCGCAGAACGATTCTCGTCTGCATGGTCCACGTCCCGGCATCGCCCCCTCAGCGCTCTGGGGAACTGCCCTGCATGGCACGTAAGCGCTAGATGCCGTACCTACACAGCAGATCAACTCGGCTACGAGGCCGGCCCGTACAGATTCGGCACACGGACGTGCCGTGCGAACAGAAGGCTCATCCGGGGAAACCCCGACCGAACGTCCGGGCCTTTCGAATATTATGAACCCGCTCAGAGTCCGGCCCATACGAGCGCGGGCCCTCCGCATGTCCGCAGAAGGGGCGCGGCTCCAAATACCACAGCAGCACACGTAAACTTCGGGGAGTCGCGCGGCTATGCGTTCCCGCACCAGCGGGATTCCTCCGAGGTTCATGCTGAGGTTGGTGCCGCAGACGGTGTCGGCCCCGCACTCGCGGGGGTCCGTCTCACGGGTCGGAGACTCCGAGGGTTCTCC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGTCCCGCACGCGCGGGGGTGTTCCG # Alternate repeat : GTCGGTCCCGCACGCGCGGGGGTGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 286955-288078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHT01000005.1 Streptomyces sp. NRRL F-5053 contig5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 286955 29 100.0 32 ............................. TCCCTCCTTTTCAGTAGGAGCGCAAGGGCTTC 287016 29 100.0 32 ............................. ACCCGCCACTGACCCACCACCACAAACCGCCA 287077 29 100.0 32 ............................. GCTTCGTAAGACAGGCCGGCCTTGGCAGCGAG 287138 29 100.0 32 ............................. GCGGGGGCACACCTGCACGCGAGCGGGCAGGT 287199 29 100.0 32 ............................. GGCTCGGGATCGGGCTCTGCCAGGTCGGTGTG 287260 29 100.0 32 ............................. TCGGGGTCCTCCAACTCGAACAGCGTCAGACC 287321 29 100.0 32 ............................. TCCTGCGCGAGCGCACCGACTGGCGGGTGCAG 287382 29 96.6 32 ........T.................... CGCAGAAGGCAAGCTGACACGGAGGGGTCATC 287443 29 100.0 32 ............................. GAATTCGCCGACGTCTCAAAGGAAGAATGGGA 287504 29 100.0 32 ............................. GCTCTTGCGCTGATCGGGGACGATGAAGCCGT 287565 29 100.0 32 ............................. CCGCAGCCCTGGACACCCGGCACTGCCCAGGA 287626 29 100.0 32 ............................. AGCGGCAGCGGGACGAGCGGCAGGCCGAGCGG 287687 29 93.1 90 ........................CC... GACAGGGCGGTTCGCCGAAGAACTGCTGTGGCGTGGTCCCCGCATGGGGGGTGGCCCCGTCGGCGGCGCGAAGAGCGTGTGGTTGGCGTC 287806 29 93.1 32 .............G.......A....... CTGGCTCGTAGTCTTGTTCGTACGGGACATTG 287867 29 89.7 32 .............G.......G...C... CAAGGCCGCGTAGAGCTGGCTTCAGCTCAGCC 287928 29 93.1 31 C.............C.............. CGCACGGGCGAGGACTTCGGCGGGGGCGCGA 287988 29 93.1 32 ..............C...A.......... GGCCAAGATCCAGCACCTCCCACGCCGCAGCG 288049 29 86.2 0 ...........A.GC.....A........ | G [288072] ========== ====== ====== ====== ============================= ========================================================================================== ================== 18 29 96.9 35 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : CGTCTTCGTCTACACCGTGCCGCCCGCGGCGAAGCAACAGGCGCTCACCGACGTCACGGCAGCCGTGGACGCGGGCGCCCTGCGCGTGGGCGAGGACGCCGGACTGCCCTTGCACCGCTTCCCCCTGGAGCGCACCGCCGACGCCCACACGACACTCGAACAGGGCGTCACAGGAAAGGTCCTGCTCAACATCGTCTGACGCCCGACCCTCCCCCCCCCATCACCTGACGACCGGCCCACCCCTGCACACATCTCCCAAGCACTACCGTCAACTCCCGCCCGGTCTCTATCACTTGTCACCGCGCATCCCTGGAGGAAAATGGCCCAGCACCGCCTACTGGCCTGTCCGGCAGCGGTGGAACGAGGCGGCGCACGACGGAAACCGGGAGGGCAATGATGAGCCACGCTGGGCGTGTTCGCCCGACATCACCGAAAAGCCCGAGCTTGGCAAAGTGGGTAAAATCCATGCACCGCTGAGAAGAAATCCCTGGTCGGCTCCT # Right flank : CTGATGGTCCTCCGAGACCTCGCCAGCGCGCAGTTGACCCCGGGACGCGCGGGTGCGCCGGCTCACCGCGTGCATCGGATGGTTCCCACACACGAGGGGCCAGGGATGCGGCCAGCGGCTACGACGAATGCTCCGGTAGCAAGTACGGCGTAACCAAGGGCGCGCCGAGCTACAAGCAAGCTTTCAACTCGACTTTACGAAAGCCGCCTCCACGGCCCCACCCCGGCACTACACTCGTCCCCCGGCTCATCCCGAGCCACGAGACGCGAGGCCGCAAACATGGCGGAGGCCGGACTCTCTCCCCAGCTCGTCGGGGCAACGACGTGCTGGGAGTCCGGCCTCCCGTCTCCGTGAGTACCGACACCCCAGAGACTCGAAGGAGAGTCTACTAGTGAGTTCGTTATCAGCCCCTCTCCAGCCGGATACGACCCCGCTCTGGGCGCTGATCAGCGCCATGATCAGCGCATCCCCCGAAAAACCTCTGTTCTGGGCGGTGTTGG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 298821-299278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHT01000005.1 Streptomyces sp. NRRL F-5053 contig5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 298821 29 100.0 32 ............................. TTGCGCCAGCGTCAGGCCCTGCGCGGTCAGGT 298882 29 100.0 32 ............................. TGCGAACCCCGGCGGCGGAGACCGGGGCCGAG 298943 29 100.0 32 ............................. GCCTAATCCGCGAGGAAGGGGCTGTCCGGTGA 299004 29 100.0 32 ............................. GCGGCCGTGGCGGCCATGTCCCGGCCCTCGTC 299065 29 96.6 33 .........................C... GGCTGCGTCCAGCGGGGCGCGTGGAACGTCGGC 299127 29 93.1 32 ............G........T....... AACCCGCGCCGCTGACCGGCGGTGAGAGCCAT 299188 29 89.7 32 ............CA.......T....... GATGGCGTCCTTCCACGTGAATCCGGCGCCGG 299249 29 89.7 0 ...........AC............C... | T [299271] ========== ====== ====== ====== ============================= ================================= ================== 8 29 96.1 32 GTGGTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CGCGGACGAGCCGATCTGGTGACCGTCATCGTCCTGGCCAACTGCCCCGCCGGACTGCGTGGTTTCCTCACCCGGTGGCTCCTGGAGATCTCTCCCGGCGTCTTCCTCGGCTCCCCGTCCGCCCGCATCCGCGACATCCTCTGGGACGAGGTCCGCACCTACTCCGGCCGAGGCAGGGCGCTCCTCGCCCACAGCACCGACAACGAGCAAGGCTTCACCTTCCGCACCCACGACCACACCTGGCACCCCACCGACCACGAGGGCCTCACCCTCCTCCACCGCCCCGCGACATCCCAGGAACCCGGCCCGGCACCGACCGCTCCGGCAGCGCCGAACCGTCCTCCCCAACAGGGGTGGAGCAAGGCGGCGAAACGACGGAAATCGAGAGGACGACGATGAAACAGCTCGGTGGTGTATGCACCGACACCCCTGAAAGGCCGGAACTTGGCAAAGTGAGTAAAATCCCTTCCCCGCTGAGATGAAACCCCTGGTCGGCTCCT # Right flank : TTCACGTCGCCCGGCCTGATCGTGAAGCACTGGTGGCCCCCGCACGTGCGGGTCGAGCCGGAACTCCCCCCCCCCGGCCCCCGGAGCCCCCCAGAGCCC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //