Array 1 401320-402029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEW010000001.1 Paenibacillus polymyxa strain JE201 JE201_1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 401320 32 96.9 35 ..........G..................... CGCTCTTGCGTCCTGAGTACGTGCCGTAGTTCAGG G [401333] 401388 32 96.9 36 ..........G..................... AACCTTAACGCAGGCACGGGATTGATCGGGTCGCCG G [401401] 401457 32 96.9 36 ..........G..................... ACTACACTCCTTGTCGTACTGCTCAGATAGGCGCAG G [401470] 401526 32 96.9 36 ..........G..................... TACATGATCGGTAAAATCATAGTCGCCATTGTGAAA G [401539] 401595 32 100.0 35 ................................ TGGCCGTGCAACGGATTTTTTAAATTCTTGTTTAA 401662 32 100.0 36 ................................ ATTTATGATGTACGCTTTATCAGTTTAAATATCAAA 401730 32 100.0 36 ................................ TTCTTAGTCGCTGGTTTGGGCGCTGGTTTTGGTGCA 401798 32 100.0 35 ................................ AACCCCTATGAGCTCACACGTATTATCCTCACGAA 401865 32 100.0 33 ................................ TGCATAATGCGAGTCTGTAGCATAGCCAGCCTT 401930 32 100.0 36 ................................ GATCCAACCGTTGAGGGTGGTCGTGGAATGAATCGT 401998 32 93.8 0 .......................A...A.... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 98.3 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CAAGTTCCGTATTCGTGTCAATGTCATTTATCCAGGGGCCATTTCGACAAATATTGATGAAACCACGGAGAAATCGGAAGGGTTGAAGCAGATTACCATCCCTGTGCAATTTCCCGAGGGAGATCAGCCGTTAGCAGATGGACCGGGACAGCCCGAACAGGTTGCTGATTTGGTAACATTCTTGGCCTCTGATCATTCGCGTCACATCACTGGCGCACAAATTGTGATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATGGAGTATTCTCTGGGACAGAGAAATGTTTTGTGGTATCTTAAGTGTATTCTTACTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCAGATCCTTCGCACCTCGAAATTTGTCGAAATGGATTTATATTCATTTTATCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTAAGCATCGTTATTTTCGAAATTATAAGGAATTAATACCGTTAGAGTATTAATTCCTGCATTTTCGCTG # Right flank : TTATCTATAGTACCTAACTTGCATAAGAACTCCCAGCAGATTCTTCATGATTGTAGCCAAGACATAATTGATATTAAACTTTAGGAATATCGGTTTAGTTATCTTAAAAATATTATTTCCACATGACTATAAAAATATTTGTTTACATAACGAGAATAAATCTAATATGATTAAGAAGTCGTTGAGAATCTAGTGTTTTTAGGCGAAATACAAACCTCTTCACATTAAACAACCATAAGTTCGTAAAATGAAACCTGAGATAGGATACGGAAACCAAAGGCTTTAAATTAAGTAGATAAAAGAGGAGTATGTAGCATATAACGCTACGACAATATATAAAGAATTGTCGATAAATTCACTTAACAACGCAAGTGTTTAAGTGGTTATTCTGGGCTTTGTCGATATTATCTTATGCATGGTCACACATTTAAAATATTTGTTCAATGGAGGTAAATAGATGAATTTATTAGCTATTCCTGGTCTGTATTTTTATATCTATC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTGTATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 411141-413142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEW010000001.1 Paenibacillus polymyxa strain JE201 JE201_1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 411141 33 100.0 35 ................................. TAAGCTGCAAGCCTAGGATGGGCCTCTGAACCTCT 411209 33 100.0 34 ................................. TTTAATAAGAACAAGGTTTTATATGGTTTTTCAA 411276 33 100.0 34 ................................. CACTCATAGACCATTTGTGGGCCATACTTGGAGG 411343 33 100.0 37 ................................. AGAATAGGCCCATGCGTCGTCGTACACACGCATAGTC 411413 33 100.0 34 ................................. CAAAACGCTTTGATAATCGTCCTGTTGGACGTGA 411480 33 100.0 37 ................................. ACCACTATAGCAGGGATGTCTAACCCTCAAGTGGCTG 411550 33 100.0 34 ................................. TCACCCTCGTGCTTAGGCCACAGCTCAGCGTCTC 411617 33 100.0 33 ................................. CTCGCTACAGACAAAGAGAACCAAGCCCTGGGC 411683 33 100.0 35 ................................. TGTCCAATGCCCCAGCATCCACGACCACCTCTCTA 411751 33 100.0 35 ................................. AACCACAACGTCCTGAATGTTGTAATCCTTGTACT 411819 33 100.0 36 ................................. CATCCTACCTAACGAGATACGCATGTCGGTTAGGAG 411888 33 100.0 34 ................................. AGCCTATCCGTTACAGGCACGAAGGACGGATTGT 411955 33 100.0 36 ................................. CATTTATCTATACGGATGTACTGTCCTCCGTAGAAC 412024 33 100.0 34 ................................. TAGCATTGCGACACTGCAATACGCTACCGACGCC 412091 33 100.0 34 ................................. CATTTGTAACTGCTTATGTAGCTCTACTTTTGTA 412158 33 100.0 34 ................................. CGCTTAAATCTATTACCGACAACGCCCCTGCTCC 412225 33 100.0 37 ................................. AGGAGCTAGGAGCAGATATCCCGAGCATTCGACCTAA 412295 33 100.0 35 ................................. AGGAAGTTTCGCATTAAAAGGCACGTTATCGCTCC 412363 33 100.0 35 ................................. TTTATGAATCTAAGCCAAAACCATTGAAGGCGCGT 412431 33 100.0 35 ................................. GTATACCAGATACTTTGCCTCAGCTCCGCATCCAC 412499 33 100.0 35 ................................. GGCCTCATCGCGCCACTGATACTGATGGTCCTTAC 412567 33 100.0 35 ................................. ATCCACGCCTGCTGTTTTGCTACCTTTGTTTTTCC 412635 33 100.0 35 ................................. ACAAATAACTGCAATTAGTAACTTGAAAAACCTTA 412703 33 100.0 35 ................................. CGCTACCGGACAAGACCCCTCCAGAAGTGCCTGTA 412771 33 100.0 35 ................................. AACAAACAGGGGGGAATCCCCTATGTGTCCGGATA 412839 33 100.0 34 ................................. AGTATCCGGGGCCTCATGGGTTTCATAATAAGGA 412906 33 100.0 36 ................................. CGTTTGCTTGCTGATGTTGGCTAGTTTGTCCTCGAA 412975 33 100.0 36 ................................. AATAAAGATCCAGACTTAAATAAAAAAACAGGTGTA 413044 33 100.0 34 ................................. CGCTAGATGGTAAGAAAACTGCTTATGAATTTAC 413111 32 87.9 0 ..........A...-.........A...A.... | ========== ====== ====== ====== ================================= ===================================== ================== 30 33 99.6 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATTACGTATGATGTAAGCACGGTAGATAGAGAAGGCAGAAAAAGACTGGCAAAAGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATCTTAGACTCGACCCAGTTCCGCCGCTTAAAATATGAACTTGAAGAATTGATAGACAAAACGGAAGACAGCTTGCGCTTCTACAATTTAGGAGATAACTATAAAAAGAAAGTAGAGCATATAGGGGCTACGGAAGCTTACGATATGGAAAGTCCTTTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCAATTGAATCAGTTACCATCAGTAAAAGTCAATGGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTGAAATTGATATCATTAGAGTATCAATTACTGCATTTTCGCT # Right flank : TATCTTTCATTGTGCCTCCTATCGGATAAGCTGGTTACGCTACATGTGAGTGCATGGATGATATGAAAAAGAAGTCTCGTTTCGTGCCCCGCCCAGCAGTAAATAGTGCAAATTTCTTTTTAACGGATTCCTTTTTCGACAAATTCCCCCTTACTTTTATGCAATAATTAACTAACATTACTATGTTGAAGCATAAAATTAACTGGGGAGTTGCTTATGAGAATTTCCATGAGTAAGTTTCTAAAACGCTATGTAACGATTTTATTGAGCTACGCAATAGGTATAGGGTTATTTTACGCTTTAGGATATAAGATGAGCGCTATGGGCATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAGTCAGCTTCGCATTATTAAAGCGCGAGAAATGAACTTATGTATCCCTTGATTGTATCAATATCAGGGGATTTTTCATGTAATTAAAAGGTCCCGTGAGTTTCCGCATGGGACCTCTATACCATTTGTTGGTGAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 71917-71681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEW010000002.1 Paenibacillus polymyxa strain JE201 JE201_2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 71916 32 100.0 35 ................................ AGGTACAGCCTAATCAAGTCGCTGACAGGGAATAA 71849 32 100.0 37 ................................ ATTTAAATATCCTCCTTGTACGATATCGTGATACTGA 71780 32 100.0 36 ................................ CAGTGGAATACTTGCTTCTGGAGCTGTCATAATAAT 71712 32 81.2 0 ......C.............A..A.....CGC | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 95.3 36 GTCGCATTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ACAGTTTACAAAGCGCTGAAACAGGATGTGCTTACAGCGCATCATCAGGATTATAACGGCATTATTGTAGAGCCATATCGTAATGATATTGAGTACAAGGCTCCACGTGATGATGATTCTCCCGTCCCTATTCCATTTCTTTCAGCGTCGGCTCACTTTGAAATTACATTAACATGTGAGGGAGAGCCTGAATCGGCTATGAAGTGGCTAAGTTTGGCAAAAACAGTCCTGCTCGGAGCGTTAAGAGATGAAGGCATTGGCGCGAAGACCAACGCAGGGTATGGAAGGCTTTTAGAGATTGAATGATAGAATCGTGAAGGTGCGAATGTGAAGCTCACATAAAACCCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTAATTAAATCAATTACCTTCATTAAGAGTCAATGTTTGATTAAAGCTTTTTTGGCATCGTTTTTTTGCGCTAATGAATGGAATTGATATAATTAGGATATGAATTACTGCATTTTCGCT # Right flank : GACAGCTCACAGAAGGAAACACAGGAATTTCATCCAATGAGGATGAAATTCCTGGAGACGATAATGTAAAACTTCCCAATAATAAAAATAATTACATTATTACGAATTTAAGCAAAAGACTGTCAACTACCCTAAATTGGTTAGGGATGGTATAGGAATGTCGACAGGACTGGTACACTTTGGACAGCGAGATTATGCCACGATAGCAGGACGCTGGAAATGGATTCGATTTAATTTGAGGATGGATATGGATAAGATAAGTATTTTAATAGCCTCGGACTAAATTGAATACCCATCGGCGGAAAAGTTAGTAACATATAATTAGGTAATTTCGGAAATGCTTAGAAGGTTTAAATCTAGATGATATTACTTAGTATTTCTTCTAAATTGTCCTTGAAGAATAAACTAAGCAGCCAAGTTTATTTAGAGAAGAAGCTGATTACCTGGAAATTCGAAGTTAGTTAAATACAGATTGATTTTTTCGATTTCATATCTAACAT # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 80249-80013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEW010000002.1 Paenibacillus polymyxa strain JE201 JE201_2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 80248 32 100.0 35 ................................ TGTTCAAAATCGCTGCACGCAGCAATCTAAACAGC 80181 32 100.0 39 ................................ TTAGCCAACTTATATCGAGCATTGAGCCAGTGGAATAAA 80110 32 100.0 34 ................................ ATCCTTACCGTTAGCAAATGCTAAGTTCTTTTGA 80044 32 93.8 0 .........................G....C. | ========== ====== ====== ====== ================================ ======================================= ================== 4 32 98.5 36 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ATATGATTACACCAAGATACTATAGGATTTGTTTTGTGGAAATACATTCTATAGGGTATATTTATCTTTTAGATCTCGATGTTGACTCATAGCATCCTGGGGACTCGATATGATGAAAGAGTTAAGAAGAATATATGCCGACAGTTTTGTCCTATTTTTTAATAACATTGAAGTAATTGGATAAATGGTTTACAAAAAAGAAAGCGGACTGTCATGATGAACGATGATCCAAGGGAAATCGGGATGAAGGCGTAGCGTAAAAGAAGAAGAGCAATAGGGGGGAAGAAGATTCCGATATGGAAAGCTCACTGAATTTATAGGGTGCGAATGTGAAGCTCACATGAAAATCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAACAATTGAATCGGTTACCTTCAATAAAAGTAATGGTTAATCCAACCCCTTTTGGCATCGTTTTTTGTGATTATGTATGGAAATGATATCACTAGGGTATGAATTACTGCATTTTCGCT # Right flank : ACGCAGTCTCTTCATAGCTACCAAAACATCCTCTATGTCGCATTAGCCCCCTGAGAATCTCTTTTTTTGAGATCTACAGGGGGCTGTTTTTATAACAGGACTTATGAAAAATATCGTTATAGCTTGGTATTTAGTTACGATTATAAATATAATTTTTTACTTAATTGGGATATAAAAATTAATTAAAGTTTATAAAACATTATTAAGAAAATTTATCCTTGTAAAATACATACAATCATAATTATAATTAACATGATCCTTAATGCCTATGTTAATCAGGTTCTTTTTTCCTATTCCATAACATGAGTTAGATTATTTTAGGGGTAATTAAGAAGAAATAGTACAGATATAAGATTGATAGAAAGGGCCTGAGAACATGGGAGAAATTAAAGCCAGCAAAGATAATAAGGTTGAGAATGTATTTGAACGTATTCATCAGAATTACCGTTACCTGAATCAAATGATGGTAGAAGAGATCGATATTGCTTCTGAGCATGGAA # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 143385-143945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEW010000002.1 Paenibacillus polymyxa strain JE201 JE201_2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 143385 32 90.6 36 .........T..A......T............ AATTATGTACGATGTTGCTGATCAGTTGTATAAAAA 143453 32 100.0 33 ................................ CATAATCCTCCTTAAATTCGCTTACATAAATAA 143518 32 96.9 34 ...............G................ GATATCGGACACGTATAATCCGTATCTTTAAACC 143584 32 90.6 34 .........T..A..........C........ CTTGTCAAAATTCGGATCGTCAACGTTCCGCTTC 143650 32 100.0 36 ................................ CCCTATAGATTGCAATCTTTTTAACCCACTCACCTA 143718 32 100.0 34 ................................ TAATCTGAACAGATCATGGCCATCCAGGTATTTG 143784 32 96.9 34 ...........C.................... ACTTTTCTCGTCCTCACTATATGAAGCCTCTACG 143850 32 93.8 33 ...........C.............C...... TTTGGCTTGTGCTGGTTGCTGGGCGATAGACTG 143915 31 90.6 0 ...............G..T.-........... | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 95.5 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : GAAGCTACTTCCTCCGACCTTGTCTACATAGACGTTTCTTGAAATCACGTTGTAGCCCCAAAAAAATTATATTACGTTACGTAGAGAGACGATATCTTAATGCTAGAATGCACTAGAAAATATCGCCCCCCCCTCCTTGTATCTATTAATATGTCCCATTCTCACCATTAAACATCACTACCTTCGCTTGCTTCACTTTGGATAACCTATAATAGGATACCAACTTATTACTGGATTTTATAAACTTATACTTATCATGCATTAAAACTTATCGCCCCTTTGCATCCACTCGGTAAGCGTAGATTAGCAGCTATACCTGGTGCGAATGCCAAGCTCACATGATTTTCCCGAGTTATTCGCACCTCAGATTTTGTCGAAAACGCGTTGAATGTGAACAACACCAGAACTTTAATCAGTGATTTTAGTATAATCTAGTTACCATATATACTGTTGTACGCTACAATAGAGATAAAGGCTCTTGGTTACCGTAGTTTTTTGCT # Right flank : TGCCCGGTCCAGTGCTGGTATCTATACTTCTTCGTTTCTCCAGTGTCAGGATCAATTGCGGGGTCTCCTTCTAAGCCAAGAACATCCTCTTCCTTTTGACCGAATTCTACGTAGTCCGTTATGTCTGCAAAAAGCAATTTTCATGTACTCTATCAGTACGCGCTGAGCATGGAAACCTACCCCATCCAATTGAATATGCTGTTTTCTAACTATATTCAGCAGCTATTGCAGCCATTGCCGCCCTTGTCGCGTTGAAATCTCTGAGGTATTCCATTACGAAAATCGGCTGTTTCGGCGTTACCCCCTCTTCGTCCGGAATTTCCGGCTCTGGCTTCTCCTCGATTACTGGAACGCTCTTCTTTGGTTTGGTACGCTCCATATTACTAGAACATTCTGGTCTTTTTTGGAACGATCCGTATTTCTGGAGCAGCAACTTTTAGCTCTTTAGAGAGCGCATCAACTGTAAGTGGGATAGATATACCTCTCTCGGCTTATCATCT # Questionable array : NO Score: 8.63 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 157814-158522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEW010000002.1 Paenibacillus polymyxa strain JE201 JE201_2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 157814 32 96.9 35 ...........C.................... GCTTAAGTCTCCGCCGTAATCGTCGAAAAATTCGT 157881 32 96.9 36 ...........C.................... GGCGGTTCATGGCCGTTTACTTCATCCAAAAGCTTC 157949 32 96.9 36 ...........C.................... AACACGTCCACCCAGCAAGTAGCCGGCAGCTACCAG 158017 32 93.8 37 ..........T....G................ ATATACGAAGAGGCATTCTTTAGCCCCAGCGAATCTG 158086 32 96.9 33 .........................G...... AGTAAGAGTAAATGAAACGGCGTAACCGTCTGC 158151 32 100.0 35 ................................ ATGAAAGTGTCTAGTAAAAGGATACTAATGAGCGT 158218 32 100.0 35 ................................ GGAAGCTTTGCGCTCCAAATATAATTTCTTGCAGC TGATTC [158231] 158291 32 93.8 34 .............C.G................ ACCAAAGAGGTATTGTAGAAACGCCCCATCCGTG 158357 32 93.8 35 .........T..A................... AACCATCTATAGTCGCAAGCGACTTTGTGGTAGAG 158424 32 100.0 33 ................................ TTTATAGGCATAAAGAAATCATTCGAGTAAACC 158489 32 84.4 0 ...T.....................A...TGG | CC [158514] ========== ====== ====== ====== ================================ ===================================== ================== 11 32 95.8 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : AATAATTCATAACATACTGTTGTGCGCTACAATGTAGATTAGAAGACCTTTGGATACGTTGTTTTTTCTGTCGCACTCTATGTAAGTACGTGGATTAAAATATTTGCTGTCATCAGGCTGTCGCCCTTTTTTTGTTTTGTCGCAGTATGAGCACATGGATTGACGCACAGCTCACTGAGAGGAACACGGGAAATTCTTGAAGACGGAACTGTATCCGTCCTGGTTTTATTGTCCCATTCCATTTTTAGATTCGGCATCTGTACGTGTAGAAGCTAATATCACACTGTTTTAGGATCTTGTAAAATTAATAGATATTTCTGGTGCGAATGTGAAGCTCACACAAAAACCCCGGGTCCTTCGCACCTCGAAATGTGTCGAAAAGCAACTGAATCAGTTACCTTCAGTAAAAATCAAGGATTGATCCAGGCCTTTTTGGCATCCGTTTTTACGATAATGTGAGGAATTGATATCATTAGGGTATGAATTACTGTTTTTTCGCT # Right flank : GAGCAGCCGTCACCTAGTCGTACGATTGGAGAGCGCTTCTTTATCCGAATAAAAGATCCAATAAGTGGAGGAACGGATATTTTATGCGATTTGGAGGGTGGGCGACGATTTAGTACACTTCCCTGTGGGATTAGTTGATCTTGTAGCAAAAAGATGATTTTTACTTCCATGGATGCCCTAAACATCCGCCGTTAGATAATGTGAATGTTCTATTATGGTGCGAATGTGAGGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATGTGTCGAAAAGCAACTGAATCAGTTACCTTCAGTAAAAATCAAGCGTTGACCCAGGCCTTTTTGGCATCAGTTTTTACAATAATGTGTGAAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCTGTCGCACTCCATGTGGGTGCGTGGATTGAAATCATTTTGTACTGGCGCGATTGCGGCCCTTGGATATTGGTCGCACTCCATGTGGGTGCGTGGATTGAAATCT # Questionable array : NO Score: 8.50 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCCACGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 158920-159556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEW010000002.1 Paenibacillus polymyxa strain JE201 JE201_2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 158920 31 100.0 38 ............................... CATTTTGTACTGGCGCGATTGCGGCCCTTGGATATTGG 158989 31 100.0 36 ............................... CTTCATCACCGAAGTCCATCGAACGCTGCTGCTGAG 159056 31 100.0 37 ............................... AATCTATTAAAAGAAAATATTTTAGACTCAATGGCAG 159124 31 96.8 34 ..............A................ TTTTGCTTGTCTAAGTTGATCTTCTTCATACAAG 159189 31 96.8 36 ..............A................ TTCAAAAATGGTCATTTTGACTTCGGAATCATCGCG 159256 31 96.8 37 ..........C.................... CCTGCTGGATGCAGCCTGGTGTTATTGCCCAGGCTCG 159324 31 100.0 37 ............................... CCCAAGCTTAGATAGTCGGTCAAGTTCGCCATTACAG 159392 31 96.8 35 ..............A................ GTTATGATTACAAAAACATCAAGTACAACACCTTG 159458 30 83.9 38 ........T..A.-A.A.............. ATACTGTTCGCGAATCGTGGAGTATAGTTTGTCCGCTG 159526 31 90.3 0 ..............A...A..A......... | ========== ====== ====== ====== =============================== ====================================== ================== 10 31 96.1 37 TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Left flank : AGAGGTCGCACTCCATGTGAGTGCGTGGATTGAAATTTTATAGGCATAAAGAAATCATTCGAGTAAACCGTCTCACTCCATGTGAGTGCGTGGACCATGATGGAGCAGCCGTCACCTAGTCGTACGATTGGAGAGCGCTTCTTTATCCGAATAAAAGATCCAATAAGTGGAGGAACGGATATTTTATGCGATTTGGAGGGTGGGCGACGATTTAGTACACTTCCCTGTGGGATTAGTTGATCTTGTAGCAAAAAGATGATTTTTACTTCCATGGATGCCCTAAACATCCGCCGTTAGATAATGTGAATGTTCTATTATGGTGCGAATGTGAGGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATGTGTCGAAAAGCAACTGAATCAGTTACCTTCAGTAAAAATCAAGCGTTGACCCAGGCCTTTTTGGCATCAGTTTTTACAATAATGTGTGAAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCTG # Right flank : TATTCCAAGCGTTCATTGTATGGTCAGAGCCAACGATGTCGCACTCCATCTGTCTAACTATGCTACCGGTTAGCTTAATGACTCATTATTAGTCTAATACTTTATTTTCTTTTAACAGCAACAACATCAAGTGCCAATAGCAGCTCCTTCCGGGCAAACAGAAGGGTTATATATACCATAAGGAACACACATTCTTTCAAACGAACGGAGAATAACCTTACCGATGCACAGAAAAGCTCAAAGGACCACCAGAAGCGACTTCTAGTGGTCCTTTGAGCTTTTGTTCTTATACTAACTCATTTTCGCTAAGGACTCATAGCCAAAATAATATATCAGAGGAGGAAGCTTTATCATTAAATATAGTCTTTCTTATTTACGGATTATTACCAGCACTAACCACGACTGAGAAAATTCCCTCTTCGTCGTGATTCAAGATGACGATAAAGGCCCCAGACTTAGATTTAGGATTGTTAGCTGCATCCAGATCGTACCAACCCCTC # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 291202-290970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEW010000002.1 Paenibacillus polymyxa strain JE201 JE201_2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 291201 32 100.0 36 ................................ ACCCTAAAGGCTTTGCGCGCTATCAGGCATAATATC 291133 32 100.0 34 ................................ TGACCAAGCTGTTTAGCCAGCCAATCATATCGAA 291067 32 100.0 35 ................................ TTCCTGCAAATCGTCTTAGCCGGGTGCATCAATTT 291000 31 75.0 0 .........T..A....-...ACT..C..C.. | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.8 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TAATATCTGATTACTATATTTATTGTTGTGCGCTACAATAGAGAAAAGGAAGCACTTGGATACATAGTAAAGGATTTCACAAGACAATAGATGATATGAGGAAAATCGTATTGAAGGTGGTACAATCAAATAGGACAGAATTTTTATTCCTATATTATAGTATTTCGGATTTGACCATAAAGTATAAACTCAATGATTTGATAGACCAGAAAGAAGACAAATTGCACTTTTACTAATTAGGAGAGATAACTATAAAAAGAAAGTAGAGAGTATAGGGAATAAGGAAACTTACGATTGGAAAAGTGCACTGAGTTTATATGGTGCGAATATGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCAAAAGTCATTCGAATCAGTTACCTTCAGTAAAAGTCAAGGTTTTATCCAAGCCTCTTTGGCATTAGTTTTTGCGACAATATGAGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : GACAGTCCGCAGAAAGGAACATGGAAATCCCTTACCCAATGAGGGTGAAATTCCTGAAAACGATACTGAAAAGCATCACAAAATTTTAAGAAGCCTTACTCGTGACTTATGAAGTTAAGGCCTAGTAAAAAAAAGACCTACTAAATTTTAGCAGGCCTTAAAATATATTAAAGTCATCACTTTTTGTTGCTACCTATTTGGTCAAAAAGTCTTAAAATATTGCCAATGCTATTCCCCTTGCGCCCTACCAATAGCCAGAAATCCATCGATGCTTATTTGAAATTGTTAGTTAGCAATTGGTAGACCTCATCTATAATTTTAACAAGTTCTATAATGCAAAATATGATTGCATTAATGCCTATCAAAACCAATAATAACATTTAGTTACTAAGAATCGAGCATGGTAAAGAGGTGTCAATGATCTGAATTTTCGTATGAGAGAGCTTTAAAAATACAATACTTTATCCCTTCATATAACTAAATCACATTAGTTTAATCCA # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //