Array 1 12499-13562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBK01000004.1 Ligilactobacillus acidipiscis strain DSM 15353 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12499 29 96.6 32 ............................C TTGTTCAATCTTAGATCCTACGTTTGGCTGCA 12560 29 96.6 32 ............................C AATCATTGATGGTACACTCAGATCCCTTAAAG 12621 29 100.0 32 ............................. TTGGTGATAACGCACGGCCATGATCGGTTGTG 12682 29 100.0 32 ............................. TATGGAAAAGGCATCCGGACATTGACAGCATT 12743 29 100.0 32 ............................. TACCGTGTGTACGATGTGGCCGACGTAAAATA 12804 29 100.0 32 ............................. CACAAAGCATTCGGATTGCCAATTACAGCCGA 12865 29 96.6 32 ......................C...... ATGTTGACGCAATGGGTGCTGTCAAGGCTGGG 12926 29 96.6 32 ............................C GACAGTACAAGGTAGCGATGGATAACCAATAT 12987 29 100.0 32 ............................. AAATATCGTAAGGTTAAGGAAAAAGGCAAAAA 13048 29 96.6 32 ............................C TTTGACATCTGGATAAGCAGTTGATATTTTGA 13109 29 100.0 32 ............................. GTCGCACCGTCAAGGATAGCCTTTGCCTCCCA 13170 29 100.0 32 ............................. AGTGATAAGGAAAAGAATGAAAATCAATTATC 13231 29 100.0 32 ............................. TCAATCCATGGCGATTGGACGTTTGATCCGCA 13292 29 100.0 32 ............................. AATGAAATCCAATCCGGTTGGCAAAGTCGATT 13353 29 96.6 32 ............................C AATATTGGCACGTGTGTATATCAGGCGCGTCA 13414 29 100.0 32 ............................. ATCATCGCGCTGTTTTTTTGCTTTAGTAGTTG 13475 29 100.0 32 ............................. TACCGGAACTGATGATCGTATCACCCAGTTCG 13536 27 86.2 0 ............T.....A..--...... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.1 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : TTCCCCACGCATGTGGGGGTGATCCCATTTGGGGACAAAAACTACGGTGGATCAAATTGTATTCCCCACGCATGTGGGGGTGATCCCAACGCAATTCGAGATGGTTACGTTAAACTGCAGTATTCCCCACGCATGTGGGGGTGATCCCAAAATGGACGGCTTAATGCAGCCTAAAGAATAGTATTCCCCACGCATGTGGGGGTGATCCTATAAATCGCTCATGCCTAAGGTGTCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGAGTCAGAAGTTGGAACCAAACAAACGACC # Right flank : TTTACCTAAAGCCAATTCAAGGCTTTTGACTACTGGATTATGAATTAAGCAACGGGGTTATTATTTAAAGATGGTGGTGCCGTAATAGATCAAAATAGAATTCGTCATAAGTGATAGGGCTAATTTAACCAGAAAGAGGTTGTTTGTAGTTATGATGGAATGTTTTTCTCCAGAAACGATTGATCATCTAAAATATTATGTTTATACATATGCTGATCCAACAAATCATGAAATCTTTTATATAGGGAAAGGAATCGGTAATCGAATCTTTGCCCACGAAAAGATGCTGCCCAGGATCGTTATGAAAGTAATAAAATTGAACGCATTAACCAATTAACTCAACACGGTCAGCAACCATAGCTACACATTATTCGTTATGGGCTTAGCGAAACCGAAGCCTTTGTTTTAGAAGCGGGGTTAATCCGGACATTTCTCTATTGTCATCTACATAGCTATTTTAATTCGGATATTGATTTGACTAATAAAGTAGCGGGCCATGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3454-2124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBK01000052.1 Ligilactobacillus acidipiscis strain DSM 15353 Scaffold52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3453 36 100.0 36 .................................... AAATATCGTCAACCTTAATACCCAACGCTTCAGCAG 3381 36 100.0 37 .................................... TGAAATTATCTTGAGTCATAGTTTGTTTTGCAAAATT 3308 36 100.0 36 .................................... GCACTTTGCATTATCTCCGTTTGCTGCTAAGTCCCA 3236 36 100.0 35 .................................... TAATTGCCCTCTTGAAACTGTCGTCGCTAGCATGA 3165 36 100.0 38 .................................... CGATTTGCTTGTCTGATAGTTCATCGCATTTGAATTTT 3091 36 100.0 36 .................................... CGCTATCATACTCTACACTAACCATGTAGTCAGTTA 3019 36 100.0 35 .................................... TTCCCCTGTAAATCCTAATAGTCCGCGTTCTTTAT 2948 36 100.0 33 .................................... TATATTTTTATTTTCCATTTTCTCGTCCTCCAT 2879 36 100.0 37 .................................... TCAAACGCTGACGAAGATCTTTTAAAAGAAATATTGG 2806 36 100.0 33 .................................... GGCGACAAGGATCATCCACGGACGATCACTAAA 2737 36 100.0 37 .................................... AATTAAAGCTTTTTTATCCATGATAAAATCTCCTTTA 2664 36 100.0 35 .................................... TGTAAAAAATCATCTCTTATAGTCATGTAATCATC 2593 36 100.0 39 .................................... CGACTACCGCCATAATGCTTACTACTATCTGCTGAATCA 2518 36 100.0 38 .................................... CCTGGATCTTGTGGATATGATTACCGTGCTGATTTACG 2444 36 100.0 35 .................................... AAATAAGATTCTCTAACAATGCCACTGGTTTTTGT 2373 36 100.0 35 .................................... CGTTTTCCTTAATCTTATCTAACAGTCCCATTTTT 2302 36 100.0 36 .................................... TATGCCACTCGTTCCAACCGTTTTCCTGTGCTTTTA 2230 36 100.0 35 .................................... GTGTACTCCAAATCGTTTTGCCTTGCCAACTCTTT 2159 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 19 36 100.0 36 GGTATTAGATGATCCCCGGTAATAGGGGACGAGAAC # Left flank : TTATTAAATATGATGAACATCAGTTGCCACAGTTAAACGAGAGTGAATTTACTGAAATTAGAGAGCAGTTATATAACAATAGACTTTCAACTTTTTCTTTTTTAAGCTTTCCAGTATATCAAGGAATATTTAAAGCGCTGGGAGAGTCGGAAATAGGGAAAGCATTGGATCAACTGTCAATTTTTAATATTCGAAACCAAATTGCACATAATTTTAACGAATTATCCGAAAAAAAAGTTAATTTATTGTTAAAATACTATTCTACTGATAATTCGTACGAAATTGTAAATAGATTATTGAGTTTAATAAAATTTGTTTTTAACTTAAGTAAAGAATGGTTAATCTTTTTTGAGACGGAAAACAAAAACATTATTTCTCTTTTAGAAAAATGATGTCTGTAAAATGGACAAATCAGCTAGGACTTAAACCTCGTTTGTCCGTTTTTTGGACAAAGAAAAATGGAATAATCATTGATCTTGTGAGGTTTGAAGGATGCTTTG # Right flank : TCGTTTTCCATTGCCATATCTACAATTTTTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTATTAGATGATCCCCGGTAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 13730-14258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBK01000052.1 Ligilactobacillus acidipiscis strain DSM 15353 Scaffold52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 13730 35 82.9 34 ....C.AC...G......C...A............ CCCTTAATAGCGATCAAACCTATAACAAATTTAT 13799 35 100.0 36 ................................... CAAAAAGTTAAACAAAAAGGAGTAACGAAAATGAAA 13870 35 100.0 36 ................................... CATGGATATCGGAGAATGGTTGGATTTGTTGGCAGC 13941 35 100.0 36 ................................... CATGAAAATCAGAAAAGAAATTTTTGCCTTAACAGT 14012 35 100.0 36 ................................... CGTGAAGGAGATTTTAACAATGAAAATGTGGACACC 14083 35 100.0 36 ................................... AAAGGGGAAATAACAATGAAAATATGGACGCCCGAA 14154 35 100.0 35 ................................... TGATAGTATTAAAGAGTAGTAAAAAACAAACAAGT 14224 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 8 35 97.9 36 GTTCTCGTCCCCTATTACTGGGGATACTCTATTAC # Left flank : TACTGATTACTATTTTGCGCCATGATCTCTTTTTCATCTTAGTGGAAAATTTAGTTTGAGCAGAAAGTTTAGCTAGTCTATTTTCTTGTCCTAATACAGAATTTGCGTAAACTATCGGAGAATGTTTTTCATCGCAAAACATTAAACCTACATGATGTTTAACTGATTCGCTGACCACCTTAGAAGAAAAAAAGCTATTTAGATTATCAAACACTAGACATTCAACATCATCAAAAGTACAAAACTTTTCGTCCCTGGAAACTAAGTCCACAAATCTATAACCATATTCATTAACAGAAACATAATGTCTCCTTTCAATATACATTATATTCTTCATAAATATCCCCCCAAATATTCAACTAACTCTTTAATTTTAAATAGGAGAAGTATCATACCACAACTAGCCGATTAACAAAAGAAAAAGTTAAAGTGTAGATACTAACCTAAAAAATAAATCATCAGCAACAAAAATATATATTTACCATGATCTGGTACATTAA # Right flank : CCGTACATCCCACTAATGGTTTGCTATCAAGCTTAACGTGGATTTTGTTTGTCCAAAAAACGGACAAAGCAAGGACATTACCCTAACGATTTGTCTATTTTAAAGACAAATATAGCGATAAATTTAATTTTAAAATCAATGTCCTCGTATTTATATTAACATCTTTATTAGTATTTTTAAAATTAAATTGAAAATATGGTTTAATAATAATTCTTCAGCAATAACAAACCACATAATTTCTGCTTACCAAAACCACCCATCTCGAAAACAATAGTATGAAAATACATTCCAAATAATCAACACTGATGCTTTTACTTAACAACAATAAATTCTTCATCTAACAATCCAGTTCTCCCTAAGTGCCACTTTAAATTCTCTAACCTTTTGACTCGAATCTGTTAGTTTATATTAAATTAGAAACAACCCCACACTGAAAACATCTGCATCCTTGACTGTACTAACTCGCTTTGAGGTACATACCACTGATCACATATACTATG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCCCCTATTACTGGGGATACTCTATTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.10,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //