Array 1 174986-173861 **** Predicted by CRISPRDetect 2.4 *** >NZ_QERN01000001.1 Escherichia coli strain 175_1 NODE_1_length_451432_cov_22.2019_ID_4954, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 174985 29 100.0 32 ............................. GGTATGAATCCTTTCCCTGGTTTATTAAACGT 174924 29 100.0 32 ............................. CCAAATAGTCCCCAACATCCTGCCGTAAATAT 174863 29 100.0 32 ............................. TGCGGGGAGTGAGTTGTATGACTAGCACGCCC 174802 29 100.0 32 ............................. TGATTGTCATAATAATGAGGTTCCAAGTATGG 174741 29 100.0 32 ............................. TTGTGGTATACGACAACTACGTAACTCCCGAG 174680 29 100.0 32 ............................. TAATCGAGGATTCGATCGCCATCGCAATGATG 174619 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 174558 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 174497 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 174436 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 174375 28 96.6 32 ...........-................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 174315 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 174254 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 174193 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 174132 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 174072 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 174011 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 173950 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 173889 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191249-190488 **** Predicted by CRISPRDetect 2.4 *** >NZ_QERN01000001.1 Escherichia coli strain 175_1 NODE_1_length_451432_cov_22.2019_ID_4954, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191248 29 100.0 32 ............................. TACCTGCTTAATACATTGCGGGTTAACGTTCT 191187 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 191126 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 191065 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 191004 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 190943 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 190882 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 190821 29 100.0 32 ............................. AGTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 190760 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 190699 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 190638 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 190577 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 190516 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //