Array 1 218582-218937 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBA01000024.1 Clostridium tetani strain 3582 contig_0025, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 218582 30 100.0 36 .............................. AAAAATATAAAGAAAAAGATATATAATATAATCAGG 218648 30 100.0 34 .............................. GCAAATCAAATATTTCATCTAAACCTTTTTTAAA 218712 30 96.7 36 .A............................ TTTAAAACTACATTCAGCCTTCCTAAATTCCTCAGG 218778 30 100.0 35 .............................. GGATCCAGCTATAAGAATAATTCTAATTTTATCCA 218843 30 100.0 35 .............................. TTAGCTTTTCTAATAGAAGGCGTTATAAATGCTAG 218908 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 37 ATTTACATTCCAATATGGTGCTACTAATAC # Left flank : TAAATCAATGAATAACTAAAAGTTAGGAATTATGGAGGATTTTCTTACCTGTATCAGAAAGTCTTATATTTTATTGAAAAGCCAACATTGGATAAAGTTCTATCCAATGTTGGTTTTATAATTATATAGATTAAAAATGTGTAATTACTAATGATTTTATCATGGATAATATTCCATCCATGTTATGTTATAAAATAAACTTTTCTTCATATCTATTTCTTCTTTATTTAAATAACCTCGGTTAAATTATACATAATAAACATAAGATATACAAAACATTGTAAAAAGGTTTTAATAACATTTGAAATAGTAATATTACTAAAATACTCATAAACTTCATAGAATCTAACATTATACCCATTTTCATTTAACATTAAAAAATAAAGTGCTTACTATTTCTTAGGGTATCAGTATCCAACTAATATATATAGTTGTTTTGATTGTTACGAATAGTGTTACTGATACAATTTATACCTATTTTATCTAAAATCTACAGTTAT # Right flank : CACGTTCATCTATGATGCACTATATGTCTATAGTATAACTTCTATTTCTGTCTACCTACTAAGTTGGGATTTCTTATAGTCTATTATTATAATACAAGTTATGTTAAATAATTTATAAACCATTAATATAACTATAATTGTCTACTCCCTTATATTTTAACATCATCTTAGGTAGACAATCAAATAAAGTTACTGGTTCTATCTTCTTTTTTACCCCACATATCTTTAGTTAACCATCTTTTATTTCTACTTTTGAATAATATTACAGAATCTTTATCTTTTCTTATTATATCATCTAATTCATATTTTAGTTTAATTATTTGTGACTCTGCTAATTCTCCTTCAAATACTGAGTTTTGAATATGGGACAAATATTTTTTACATACCTTAAAAGTTCTATTTAAAACTCTCTGCCCCTCCTCACCACTTTTTATATCATAAACTAATATAACATACATTTAAATCTCTCCTACCACCATATTTTAAATGGTTCATATTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATATGGTGCTACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 18730-18117 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBA01000027.1 Clostridium tetani strain 3582 contig_0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 18729 29 100.0 36 ............................. ACTTGTTAGGGGGACAGAGAAGATATTAAAAGAAAT 18664 29 100.0 36 ............................. AGGAGCATGTCTACTCTACACATCTTTAGTTCCTCG 18599 29 100.0 38 ............................. CCCATTAGTTCAACATAATCTACAGTATTCCAATTTAG 18532 29 100.0 33 ............................. ACAGCGGATGCAGTTATGCAACAAAATAGTTTG 18470 29 100.0 35 ............................. AACAACTAAGTCACAAGAAGATTTACAAGACTTGG 18406 29 100.0 37 ............................. CCAAAAGGATTCCTTTCTGTTTTAACTGCCCCTCTAG 18340 29 100.0 35 ............................. TTTCTTCTTGGCTAAAACCTAAAATTGTCCATTTG 18276 29 100.0 35 ............................. AATAAAACTATTAGCCGAGATAAAAAAAGAGCCAG 18212 29 100.0 36 ............................. TTATTTTATCTGCGGTTTGAGTTAACGAGCTGCTAG 18147 29 93.1 0 .......................A.C... | CC [18120] ========== ====== ====== ====== ============================= ====================================== ================== 10 29 99.3 36 TTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AATTTTAATTTAATATCGAACCACCTTAAATTAATGCCCGAAAACCTTCGAGATAAACAACGGAAGTTTTCAGGCATTTACTACAAATATAATATTTTAGATGCAGAGGACAATTTAGTTTTAATGCTTGAAGGGAATTTTACAATAGTTTCTTGGATGACTACCTGCTCTATCTTTAAAGTTGGAGTAAAGAGCATTTACGTCTCCGGATAACGATTTCTAAGCTTTAGATGGAGTAAAAACTTTCTCTAAAGCTTAAAACTCTATTTATAAAAATAATCATATATTTATAATGTTATGTGATAAAATATAGACAAAAGTTTTCCCAGGTAATTTTAAATAAGAATGTAGCCTAAGGTATTGATTTAAAAGGGTTTATACCCTGTTTTTTAATGTGATTTTCCAAAAGTCAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTGTGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTAGT # Right flank : TATTTCCAAATATCTTATTCTATCAGCGTCTTATCACCGGGCAGTTCAGTATAACAGTAAAAGGATATGATGGATTTATAGCAGAGTAATGTTAGAGGTAGTTTTTAGCTTAGGCTAGGAGCTATCTCTTTTTTATTATTGTAAAATATCTAATAATGTAATAAATATTTACATCTGATCCTATATTGTACTATAATGTAAATAACATTGCGAAATAGGGGGGATTTAAATGAAAGCTTTAACTAATATAGGTAAAATGCTTGCAATATTAATAATTTTATCCATAATAATAACCATATCACCAAAGCTTGGGTCTATAGTATTTATGATAGTTCCAATAATATATTTAATCTATCTATTCAAGAAAGAATCTAAGTTTAAGAATTATAACTTTTTACTAAAAGGATTAATTAGCTCTTTTTTAGTATTAGTTTCTATTACAGGAATTGGAGGAGTTTTTTCTGAATTTAAAGAAGAAGATAGTAAGTGGAAACAAGTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 37479-37060 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBA01000027.1 Clostridium tetani strain 3582 contig_0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 37478 30 100.0 35 .............................. GTTATGCTGCAACTATGTGCTATGGTTGCAAGAAA 37413 30 100.0 34 .............................. TCCCTTTCTTTTTGGCATAATAAAAAACTAGCTA 37349 30 100.0 36 .............................. TTTATATTTGGATTAACAGTTGTTAATTTAGCACCA 37283 30 100.0 34 .............................. TAATATTTAAGTTTTTCTCGAACCTCTGCAAAAC 37219 30 100.0 34 .............................. AAAAATAAAAAAAGAGGTAGCTCCTAGCCTAAGC 37155 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 37089 30 90.0 0 ............T...............TA | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 98.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TGTGAGCTTTTCTTTTAAAAAACTTAACGGTGTATGGCAGCTTTTACTATTGGACTCTAAAAAAGACGATGAAATAACGATAATTAATAACTCTAAAATAGATGAGGGAAAATTGTATATTGGAGTTTTAAATTCTGAGAATGAGATTATTGCTTTTGATAAAGAAAAGCAAGACAAAATAACATTTGTAACTCCTGAAGAGGGATGCTATCTCATTAGGATTTTAGCTAAAAACTCTAGTGGAAAATGTGATGTGAAAGTAGATTCTAAAAAAGGTATAGATCTTAATTACAATTCTATTAATGGGCATAATATGGGTTTACTAGAGAAAAATAATTGAATAAATTTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCATTGATTTAACAGGGAGTGATTAATGTTTAAAGGGAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGATTTTACAGTG # Right flank : AACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTATTATAAACTTATTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 9115-8696 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBA01000028.1 Clostridium tetani strain 3582 contig_0029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 9114 30 100.0 35 .............................. AGTAATAACTAGAGAGGACATTGTTAATAAGATAT 9049 30 100.0 34 .............................. ACAAGTTACAGTTAAAACAGGGGTAGCAAGTGTG 8985 30 100.0 36 .............................. TGCCTTTTATATAATGTCTGTAATGCACTTATCTCC 8919 30 100.0 35 .............................. ATAGATAATGGTTCATAACCTACTACATCCATTTC 8854 30 100.0 35 .............................. CTTTTAGAAGAAGTAAAGAAATGGTTACTTTCAGG 8789 30 100.0 34 .............................. TTTTTTTTATTTCTGTTTTATATTCTACGCCTGT 8725 30 93.3 0 .........................C.C.. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.0 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGTCAATCTGTGGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAACGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AGTGACTAACTACAATTTACTGCATTAGTTACCATTTTGTTATTGTTATAAATATATTGGTACGAATAAAAACTAAATATAAAATTGAAAAATAAGGAGTCTTCTAAATTTAGACTCCTTATTTTTCATGGTATATGCTGTAAATTATTATGTAAAAATGTTATATTTTAATAACATATGGTACAATATAGAATAACAGAAACGTTTTGGTTATATGAAAAGTTTATAGAGTGATACTTGGGAACTTAAAATTTTTAAATTAAATATGTAAGGGGGATTTTAATGCATATATCTCATAAAGCTCTTTTGTATAGTTTTTTACGATATGTTGAATCTATTGATGAGAAACTATACAAGAAAAGTAGTTTAAGTATAAAAGATAGATTTTTAGATCAAATATTACAAGAATCATATGAACTAGTAACACAAAATATACAGATAAAAGCGAATAAAAGTGGCACTTTTAGATTAATGAATATATTTTCTAATATAGATGGTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 13488-13264 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBA01000028.1 Clostridium tetani strain 3582 contig_0029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 13487 30 100.0 34 .............................. GTGTGTCAAATAACAAAGAACAGAGTACAAGTAT 13423 30 100.0 36 .............................. ACGTACCACCTTCTATTATTACTGGGGATGGTAAAG 13357 30 100.0 34 .............................. CTTTTTCTTAAATGCGGTACATCTGTAACTTCGT 13293 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAGTGGAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGGGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCCATAAAGCTTAGAAATCGTTATCCAGGGACTTAGCTACTCTTTACTCCCGCTTTAAAGAAAATGGAAGTATTAGAGCTTATCGTCATCGGATAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAAAAATAAGTATATACTTATAGTGTTATGAGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGAAAATATAGCTTAGAGTCTTGATTTATAAGGGGTTACATACTATTTTTAAATGTGATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TAAGTTCCTTTCTTTTTAGTGGAGTACATAGATAGTATGCAAATGCTCTTAATAGCAATGTAAGGAAAAATGTGGTATAATGGCATTACCATAAATTTGTGGGAGTGATATTTTATGAATATCTTAACAAATTGTATTATTGGGTTTATTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGCAGCATATAAATAATAGTCTTGGATATAGAACACCATTTTCTATGAAAAATAAAGACACATGGTATGAGGGAAGTCGTTTCTACGGGACAATACTTTTAATAAGTGGTATTATTTTTATACCATTTTCAATATTAATAAGATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATATACCGAAATACATTTAAGAATGATATTTGATAAGAATGGAACAAGAAAATGAGATAGTTAAAGGGAAGTCTAATGACTTCCCTTATA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 16288-15609 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBA01000028.1 Clostridium tetani strain 3582 contig_0029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 16287 30 96.7 35 .C............................ GTTATCCAACCTAAATGGATATGTTGGGATAAGGA 16222 30 100.0 35 .............................. GTGTATTTAAATACAAGTGATAGCGAAGTGAAAAA 16157 30 100.0 35 .............................. AATAATCTAATAGGTGGAGAACAATACGCAAGTGG 16092 30 100.0 34 .............................. GATGCATTAAAAGAGGCTAAGGGCAAATTAAAAA 16028 30 100.0 36 .............................. AAAGTTGAATCTTGCCAATATACAAAGTCAACAAGC 15962 30 100.0 34 .............................. TGGTTTAAATCCCCTACATACTGTACTAGTCCCT 15898 30 100.0 36 .............................. TTGAATTTATGATTTTTGTTTAATATAAAATTAATA 15832 30 100.0 34 .............................. CTCATTGGAGCTTATTGGAGTAAAAAAGAAATAT 15768 30 100.0 36 .............................. TCAAAATTCTGTAGCAATCGAAGAATATATACAGTT 15702 30 100.0 34 .............................. GTAGCTCCATCCATCTGCTTTATTTCTTCTATAA 15638 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 99.4 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAGATGAGTAAAAATTTTAATTATAATTATGCATTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAATAGAGTGTTCAAAACCTGTAAAAAGTATTTGTCACATTTTCAAAAATCTGTATTTAGGGGAGAACTTACACCAGCAAATTTTATATTATTAAAAAAAGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCACACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTGTAAGATATTGATTTATAAGGGGTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGGGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 27730-27891 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBA01000028.1 Clostridium tetani strain 3582 contig_0029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 27730 30 100.0 36 .............................. ATATAATCATTTTCTCTTAAATATAATCCTCCAATA 27796 30 100.0 36 .............................. TACATCTTTTTTAAAGCTAGTCATCATTACCTCCAA 27862 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 TTTAAATACAACTCTTGTTATTGTTCAACT # Left flank : ACTCAACTAAATCTGTTATAAAACTATTAAAATCATTCATATTAGTAATTTGATTTTCACGATTTTTTATAAATTTATACATTTCTTTATTGGTTGAAAATCTAAAATAGTTCACTATTTGCATCATTATACTACTTAAAAATTTTTCAACTTTACTATATCCTTCTGTATCTATAGCTTCAAAACTTATTTTTATAGGCAAGTATTCTTTCATATGATTTAGTCTTTTCTCTAACAAATATAAAGTAGTGGTTTTCCCATACTGTCTTGGTCTATTTATAATAAAATATTCTTCATTATTTACCAATTTTAATATACTATCTAGTTTATTAGATATATCTACCATATAGTGTCTTTCTGGTATACAGGTTCCAGTTACATTAAATCTTTTTTTCATATAACTTTCACTCTCCTTACCCTATTATATTACCATAGAACAAGATATTAAGACAGAATAATCATGGGTTTAAAAGACATGGCTAAGTTTTTTTAATATATAT # Right flank : CACTGTAAAATCAAGGTTTCTTAAAATTAAGAATATCATAAAACCATTGATATTTCAACATTTCCATAAAAATTTACCAGGCGATTTAACTTTTGAAAAACTACATTTCAAAATAGGATATAAACCCTTATAAATCAATATATTAGAGCATATTCCTATTTAAAACCACCTGGTAAAACTTTTATTTATAATATCAAGTCTTCCCCTGTACAACTGTATGGATTTCCTAATATTTCTTCATCATAAACTTTATTATTCATAACGAATTCCTCTGGAAGTATATTTTTAAATTCGCCATAAAGTCTTTGCCAAGTTTCCCCTTCCACTTGCATTATTTGTTTTATATCATTGGCTTTTTTCAAGTTTATTTTGCTATGATTTTTTATCATGTTTATAATAATGATATAATAGCTCGTATATATTACCTCCAATAGCCTCCACTATACTTTTTGCAACTTCTAGTCTTCTACTTTGATAAGTTTCAACTTGTTTAACAAGTA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATACAACTCTTGTTATTGTTCAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //