Array 1 70518-72097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTP010000003.1 Lactobacillus delbrueckii subsp. lactis strain NCIMB 8882 NCIMB8882-i1-1_scf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 70518 33 100.0 37 ................................. AGATAGTTATTTGTTTGCAGAAGACAAGCCTGCTGGC 70588 33 100.0 32 ................................. TGGTAGCATCTATTCCTGCTGTAAGACGTGAG 70653 33 100.0 34 ................................. TCAATACCTTGTTGACGGCACTAGACGATAGATA 70720 33 100.0 33 ................................. GTCCACTTGGTACCGGAGTGCTTTGCAAAGCTC 70786 33 100.0 36 ................................. GTCTTGGGTTAGCACGGCTTTTACGCAGGACCTGGT 70855 33 100.0 34 ................................. TCTCGATGGACCCTAACAGCTCATCTATAGCACA 70922 33 100.0 33 ................................. AATAGGAGGTAAAAGAAAAATGGAAAAGAAGAA 70988 33 100.0 33 ................................. AACTATTTCCCAAGCATGGACGGGGTCGCCATC 71054 33 100.0 34 ................................. TCGCAGTAATTGCCATGTCAGCATGGCCAAGCCG 71121 33 100.0 34 ................................. TTTGGCTTGTCCTTGATATCGCTGGTAGCTCTCA 71188 33 100.0 34 ................................. CTTGATTTGCATAGTCTTCTTTTTGTCCAAAGCA 71255 33 100.0 36 ................................. ATATATTGTAGTTCCAACATTAACCGCCCAAGCACC 71324 33 100.0 33 ................................. CTTGTAGATGATAAACGGGCGATACTCATCAAA 71390 33 100.0 34 ................................. AAACAATGAGCTCTGGACAGACCTACAGGTCATC 71457 33 100.0 36 ................................. ATATATTGTAGTTCCAACATTAACCGCCCAAGCACC 71526 33 100.0 35 ................................. ACTGATTCTGCAGGCGATGGCAATGATGCACTGGA 71594 33 100.0 32 ................................. ATCTGACTGAGTGCTTAGTGGCATCTCTTTAT 71659 33 100.0 35 ................................. ACGCTTACTCTATATACAAAAGTAGGCCAAGCTGA 71727 33 100.0 33 ................................. TACAGACAAGCCGGCTCTTACCCGCTTGCCCAG 71793 33 100.0 38 ................................. TGATTGTCCCGTTTGAGAAACCAGCAAGGATATACTTC 71864 33 100.0 35 ................................. TGTAGATTGTTGCGATGAGTCAGCAAGTGAGCGCT 71932 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 71998 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 72065 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ====================================== ================== 24 33 99.1 34 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTAACTAAATGTTGCG # Right flank : TATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTTGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGTCAAGCTCAGCATCCCCAAAACAAAAACTTAGTTGAGGAGAATAAACATATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCTTGGACGCTCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTACCCGCCTGGCTGAAGCCCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9703-8398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTP010000057.1 Lactobacillus delbrueckii subsp. lactis strain NCIMB 8882 NCIMB8882-i1-1_scf57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 9702 35 75.0 39 .C.T.....C...C.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA G [9689] 9627 35 80.6 35 C..T.-.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA G,C [9593,9596] 9555 36 94.4 41 ....C..C............................ GCAAGTGGTTACTGGGTATCTGATGACGGGAAACTGTTTGA 9478 36 100.0 37 .................................... CCGTATGTTTAAGGGGTGTACCGTTTACAAGGCCGAT 9405 36 100.0 40 .................................... CAAGAGCAAATTCTACAAATAAAGGAGGTGATGGTATGAG 9329 36 100.0 40 .................................... CCAAGGCACAAGGAAACTATTACGGGGCATCATGCTTGAT 9253 36 100.0 40 .................................... CCAAGGCACAAGGAAACTATTACGGGGCATCATGCTTGAT 9177 36 100.0 37 .................................... CATGAAAAAAGGTCGGCCAATTTTGGCAAGAAAATAT 9104 36 100.0 36 .................................... CATTGGTAAACCCGATAAATTTTTTAAGTAAAAAGT 9032 36 100.0 38 .................................... CGACCGATAAGGGCAAAAGGGTTTGCTTTATCATCCAC 8958 36 100.0 39 .................................... CGAAAAAGAATTCGACGAGCTTTCAGAAGATGAAGTCAA 8883 36 100.0 38 .................................... ATGGGGGATCGACTTAACAGCCGTTCGGGAAGATACAC 8809 36 100.0 42 .................................... GGAAATGAAGCGGGTATATGACGCCAAGATCTTCAGTCGGAT 8731 36 100.0 38 .................................... CAAGTCAAGATTTTTAAACCATGAAGATTTTGATTTGG 8657 36 100.0 39 .................................... TTTTCCTTTGACTGATGAGTGGGCTATTGACTTGACAAC 8582 36 100.0 38 .................................... GGAGGTACACAAATGTTAAACGAATTAGAAATTGCTAA 8508 36 100.0 39 .................................... GGAAAAACAAACATGCAATTAGGAATTTATCATGAGTTT 8433 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 18 36 97.2 39 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : CTGGAAGCCTATTTACCATGGGCTGAGAATGTCAAGCTCCACTGTAAATAAAGTCCCATAAACTGATTAATCCCATCTTAGCATTGCTAGGATGGGATTTTAATATACTCTGCTATTGGGTGCTTACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAA # Right flank : AGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //