Array 1 1708965-1708740 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034358.1 Clostridium septicum strain VAT12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1708964 30 100.0 35 .............................. AAATTAAAAGAGCTTTTACAAGTAATGGCGTTACT 1708899 30 100.0 34 .............................. TTAATAAGAGTATGAAAGAAACTACTAAGAGAAC 1708835 30 96.7 36 ........................C..... CATAATCAACTTCATGTCCCTCTATATTCTCACATC 1708769 30 96.7 0 ........................C..... | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 98.3 35 CTTTAAATACAACTTCTGTTGATATTAAAC # Left flank : TAATTAAATATTACCATCTTAATCAACTTTAATCAAGTCTTTTTTTATTAAAGTTGATTAAGTTTGATTAATAATGCTATAATATATAGAGGAGGTGTTATTATGGCTGATAAAAAAGATAGTCTTGTTAATAGACAAAGATATTCAAGCACATTTGATATAGAACTATTAGAAAAAATGAAAGAGCTCTCTAAAGAAACATCTATTCCAATGTCTAAACTATTAGATAAAGCTTTAGAATTATTATTAAAAGAGCATAATAAAATTTAAGTCTTAGAAATTTAAATCTAAGACTTTTTCTTTTAAGCAAATACTTTGTATTAGCTAATATATAGCTAATTAATATTAAATATATATAAATAAATATAGATTGCAGTTCTTTGTGAACTTTTAAAAGTTTCTTTTGGTACTTTTATATTTTACTACCCTCATATGGGGACTGAAACATAAATTTTGTTCATATAAACTTAAACATTTTAACCTCTTCATAAACTAATTTA # Right flank : CCTGTTATTTATAGGACTCTTATTATATTGGTTTTATATTTATTAAGTTGTATTCTAGTACACACCTAGAATTCAATCTATTTTGTACTAGCTTTTACCAAGTAACCTTGGAGCGTTTGGTGAGAGTATTAAAAGTTTTAACTAAACTACTTATTAAGCCAGTTTTCTGATCACTTTCTCACCCATAGGCTGGTAAAACAACCTTTAATATTCTGATATTATATTTTCAATATCTGGAATAGCAATATTCTTACTAGCATTTACATCTGCATTTTCTTTATGATTACAGTTAATACATTTAAATTCTGATTGTGATACTCTATTTTTCTTATCTATATAACCACATGATGAACATCTTTGACTAGTAAATTTAGGATTTATAAATATGCATTTTATCCCTTTTCTTTAGCTTTATATTCAATTTTTTTTGCAAATCATAATATGACCAGTTACTTAATAGACTTTCATTTTGATGTTCTGAAAACCGCTTAAATCTTCCA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATACAACTTCTGTTGATATTAAAC # Alternate repeat : CTTTAAATACAACTTCTGTTGATACTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2551818-2545844 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034358.1 Clostridium septicum strain VAT12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 2551817 28 100.0 36 ............................ AAAGGAGTTAAATATGAAGAGAAAATGGAGATGGGA 2551753 28 100.0 37 ............................ ATATAGATTAACTCATTTATTAGAGTATGGTCATGCT 2551688 28 100.0 37 ............................ AGTAACTTATTAAGAAAAGGAAAAGAGTATTTAGAAG 2551623 28 100.0 36 ............................ CAGTTTCTGTATCAAGATTTCTTCATCAGAGAAAAG 2551559 28 100.0 37 ............................ ATAACTCCAAAAACGTAGTCAGCAACAAATAGATAAA 2551494 28 100.0 37 ............................ TCTAAAAGAAGAGGTTGAAATGGTAGAATTAAAGGGA 2551429 28 100.0 36 ............................ ATATTTTGTAAAAGAAATGTGTTTTAGATACCTCAG 2551365 28 100.0 39 ............................ AAGAATATCCACATATTAAATATGGAGAAGAATTAGCAA 2551298 28 100.0 37 ............................ TAAGTTTGGAATTAAATACTAAAGACCAAACTATATT 2551233 28 100.0 37 ............................ TCATGGGATATCATATCAACATGTGGAATATTTGAGT 2551168 28 100.0 37 ............................ ATGCTAGTTAATGTACATACCTTTAATAATTCTCTAG 2551103 28 100.0 36 ............................ CCTAATGAATTTTCCGGGATATTTATATTATAATCC 2551039 28 100.0 36 ............................ TTGTAGTTGCAGTAATCGGTGTGTTTGTTAACCCAA 2550975 28 100.0 36 ............................ TTTGCATTGCAGAGTTCATAAGGTCACTTCTTACTT 2550911 28 100.0 36 ............................ GTGACTAATCCTATAAACATAAAAAATAAAAAAACT 2550847 28 100.0 36 ............................ TCAAGGTTCGGTATAGTAAGTACTAAATGGTAAAGA 2550783 28 100.0 37 ............................ GTAGATAGTAGTAATAACAGTGGGACAGGTCAACCTG 2550718 28 100.0 37 ............................ AGATGAGCGGGGTTAGATAACAAGAGTGAATTGCATT 2550653 28 100.0 36 ............................ TATATTAAACTTTACTTCACCTTCTAGCATATCATA 2550589 28 100.0 37 ............................ GTAAATTAGTAGTTTGTTATTATTAACTCTTTATATT 2550524 28 96.4 39 ..........................T. ATTTGCATTATACACATTGAGTGGTGTGCATAATGGAGG 2550457 28 100.0 37 ............................ ACGACTTTTATAGAAATATCATTAAGTCGAGAAGTTA 2550392 28 100.0 37 ............................ ACATAACTACTAGAGCAATAGACTACTTATATGGAAC 2550327 28 100.0 35 ............................ TCAGATTAGGAAACTATGTATTAGGTTGCTGGTCA 2550264 28 100.0 37 ............................ GTTCATAGATTGTTCAGATACTATTCAAACTTAACAA 2550199 28 100.0 37 ............................ ACCGCATATGACGGTGGGGACGGAACTTTAACAATAG 2550134 28 100.0 37 ............................ CACTTTGTGGTGCTTGTTGCTGAACTTGTGGCTGAGC 2550069 28 100.0 36 ............................ AAAGCTGAACCCATATCCCTATTTTGGTTAATTGGT 2550005 28 100.0 36 ............................ TGTATTCCAATCCACGTTTTCTAACTCTTGTTTTAA 2549941 28 100.0 36 ............................ TAGAGATTGAAAAAAGCAATGAAGATTATTAGAGAA 2549877 28 100.0 36 ............................ GGTTCTAATACTATTAAAATATCCAGGAGCGATTGC 2549813 28 100.0 37 ............................ TACATGCTAATTCTGACTCGTATAGTTGTCTGTATTT 2549748 28 100.0 37 ............................ ATATAACCACTAGGGCAATAGATTATCTATATGGAAC 2549683 28 100.0 37 ............................ GCGGGTATGTACTATTACTTCATGAGTGAGGATGATG 2549618 28 100.0 35 ............................ CTTCAACTTGACTTTCCTTAACAGGACCCCAGTAA 2549555 28 100.0 37 ............................ TTTACTTATCACATTGTTCAGAACAACAACGTTGTCT 2549490 28 100.0 36 ............................ CATAGAACCTTGGATATGGGCTGGGGAGATTTTTAG 2549426 28 100.0 36 ............................ AGAGGTGCTGATGGAGTCGTTCCAGACTTAAGTAAC 2549362 28 100.0 37 ............................ AGGTTTATCCTTATTACTATAATGCTTCCAATTGTGG 2549297 28 100.0 37 ............................ AGTGGAATCAAGCATAGAGAGAAGAAAATATTAGAAA 2549232 28 100.0 38 ............................ GCAAACAAAGAATGCAAACAGAGTATGGGCTGGAACTG 2549166 28 100.0 38 ............................ CTGTTGTAGGATATAAAGACATTAAACCTCTAAGCGAG 2549100 28 100.0 37 ............................ CATCTTTACTAATTACAGGATATCCCCATTCTTTAAT 2549035 28 100.0 38 ............................ AGATTAAAGATATTTTGAAAGGAGAAATGTATTAATGG 2548969 28 100.0 38 ............................ TTGATGATGTTGGAACCATCTCCCTCAACGTTTTGCTC 2548903 28 100.0 36 ............................ GTAGCTGTCCCATTAGGGAAGTCGCTAGATAGTTTA 2548839 28 100.0 38 ............................ TTTGAATTAGCTTGATAGTCTCCTTGTTCAAGTCTTTA 2548773 28 100.0 37 ............................ CACTTTGTGGTGCTTGTTGCTGAACTTGTGGCTGAGC 2548708 28 100.0 36 ............................ AAAGCTGAACCCATATCCCTATTTTGGTTAATTGGT 2548644 28 100.0 36 ............................ TGTATTCCAATCCACGTTTTCTAACTCTTGTTTTAA 2548580 28 100.0 36 ............................ TAGAGATTGAAAAAAGCAATGAAGATTATTAGAGAA 2548516 28 100.0 36 ............................ GGTTCTAATACTATTAAAATATCCAGGAGCGATTGC 2548452 28 100.0 37 ............................ TACATGCTAATTCTGACTCGTATAGTTGTCTGTATTT 2548387 28 100.0 37 ............................ ATATAACCACTAGGGCAATAGATTATCTATATGGAAC 2548322 28 100.0 37 ............................ GCGGGTATGTACTATTACTTCATGAGTGAGGATGATG 2548257 28 100.0 35 ............................ CTTCAACTTGACTTTCCTTAACAGGACCCCAGTAA 2548194 28 100.0 37 ............................ TTTACTTATCACATTGTTCAGAACAACAACGTTGTCT 2548129 28 100.0 36 ............................ CATAGAACCTTGGATATGGGCTGGGGAGATTTTTAG 2548065 28 100.0 36 ............................ AGAGGTGCTGATGGAGTCGTTCCAGACTTAAGTAAC 2548001 28 100.0 37 ............................ AGGTTTATCCTTATTACTATAATGCTTCCAATTGTGG 2547936 28 100.0 37 ............................ TGTGGTTACAATAAAACACCTAAATTTGAAGAGGAGC 2547871 28 100.0 36 ............................ ACGAGAAAAGTCCACGGAGCAATACCACAAATTAAC 2547807 28 100.0 35 ............................ TTGGGATTCTTATCAGTAATAATCAACGAGCATTC 2547744 28 100.0 37 ............................ ATTACTAAATGGAATACATTAATCAAGGCAAAAGCTA 2547679 28 100.0 37 ............................ ATATGGAAGAGTTGTCAAATAAGCTAGAGGCTACAAG 2547614 28 100.0 35 ............................ AGGAGATTTATTTACTAGCATAGATAAGCTTACAT 2547551 28 100.0 37 ............................ TTTAAGTAGATAAAATCAAGTTAAGTACGCTGCTCGC 2547486 28 100.0 38 ............................ TCACTAAAAGTTTCTCTAAATAATATTGCTACTGGCTT 2547420 28 100.0 36 ............................ TTTATTTAGGGGTAAGATGGGCAGAAAGTTCTAAGC 2547356 28 100.0 37 ............................ TCATCATGTAGAAGTTCAATAAGTGGATCTAGTATAA 2547291 28 100.0 35 ............................ TTGTAGGAGGTAATAGTAATGAGGGAAAAATATGA 2547228 28 100.0 37 ............................ AATAAAGAAACTTATATAATAGAATGTGGTTTTGACT 2547163 28 100.0 39 ............................ CTTAATCAAGTTCATCACCTTCCATGTCGTCATCGCTAT 2547096 28 100.0 39 ............................ TCCTTCTCCATTTCTTCTATTTTCTTTTTTAACTTCTTG 2547029 28 100.0 37 ............................ TCTGTTAATGAATGTTCATTGATTATTGTTGATAGGA 2546964 28 100.0 37 ............................ ATCAATGGAGTTGGTAACTATCCAGCCGGTATGTATT 2546899 28 100.0 36 ............................ AAAAGAAACAAATTAGAATGTTATATGTTTTAGATT 2546835 28 100.0 36 ............................ TCTTCATGCTAAGTTCTGTGTTCTGTGAAACGGGTA 2546771 28 100.0 36 ............................ GAGCTTGTGACAGTTGTTTATTTCTTTGTTGCATTG 2546707 28 100.0 36 ............................ TCTATAGCGGAGCGTGGCTCATAAATCACTTTGCAA 2546643 28 100.0 38 ............................ ACAAATTCGCTATGCAAGTTATATTATCTTTAACGTTA 2546577 28 100.0 36 ............................ TCGTGACGATGTTGCCTGATTTGTCGAATAAACTCG 2546513 28 100.0 38 ............................ CTAGTTACTTTGATTGAGGTGATATTTTATGAACGTAA 2546447 28 100.0 35 ............................ TTTCCTAAAGTTTCTATATAAAATTGTCTAAGAAC 2546384 28 100.0 37 ............................ TATTCAATGAATCAACAATAATTTCTTCCATTAAATC 2546319 28 100.0 35 ............................ AAACTTTGAACTGATTAAAGTGTGTTTCAACGTCC 2546256 28 100.0 36 ............................ TTAAAATAATTTTCTCTTATTCCCATTTTATATTCC 2546192 28 100.0 37 ............................ TCATTTAAATATCTCCTTTTTCTTTTATTAATTCATT 2546127 28 100.0 37 ............................ GTTGTTATCACTTGACCTGTTTCAGGGTGATTGACAC 2546062 28 100.0 36 ............................ GTTTGAGTAACAACCATTGAACAATAACCTCCATCT 2545998 28 100.0 36 ............................ ATTGGATTTCTTGCAAAATAATAGAGGGTAATTCAC 2545934 28 96.4 35 .......T.................... TTAGTTCAAAAACGATGGGAAAATATGGAGGAAGT 2545871 28 96.4 0 .......T.................... | ========== ====== ====== ====== ============================ ======================================= ================== 93 28 99.9 37 GTTTTATCTTAACTAGTGGAATGTAAAT # Left flank : ATTAAACATTTAATAAATGATGAAAAATATAAACCTTTAAAGGCATGGTGGTAAAATGTTTGTTATAATAACTTATGATGTTAACGAAAAAAGAGTAAATAGAGTGAGAAAAATATTAAAAAAATATGTAACATGGACGCAAAATTCAGTTTTTGAAGGAGAAATAACAGAAGGAAAATTAACTAAATGCTTAGCAGAGGTTAAGAAAAATTTAGTTTCTGCAGAAGATTCATTATATATTTATAGAGTTTCATATAGCAAAAATATTACTAAAGATGTAGTTGGAGTAGAAAAAAATTTAGATGAGTTATTTATATAGTTGCAGTAAGCGAATTTTTAACTTTAACCCGTGGAATACTTGAAAATAGAGAGATACACAGGTATTTATATTAAACAATAAATACCTTACTGATGGTTTACTGCAAAAGTATATGTTATAATAAAATAAAATATACTTGAAACATAGTAAAATCAATATGTTTTATATCATATTTTTTGGG # Right flank : ACAACTTTAATTGGGGTTAATCCGATTTTATTACATTCTTATCCTATTAGTTTTTCAATCTTCATGCTATCCCTATTTGTGTTAATCCGATTTTATTACATTCTTATCTTAGCACTTATATGTAAAGTTAATTATACCACATATATATGGTATAATTAATGTAGCTATAAACTATAGGTATACTTTATAGGGGTAGTTCAAATCTATACTATTGTATTATCCCAAAAGTGAGAGGTTATACTAATAAGTTTGAGTGATATAAAAATTATGGTTTTTTAAAGCCTTAATATATAAGGATTAAAATCTCATTAACCTTATAAAGCAATAAAAAAAGAAGGAGGATTTTATGTATAGTTTTATTTTGGAAGTTTTATTTATAATGGTACCGTTGGCAATAAGTCTGATTATTTATATGAAAATTGATAAAAAATATGCTATAACAAATATAATAAGTCTAAAACTAGGTATAAAAAGAGAATGGATGGCGTTTTTTTGTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //