Array 1 55542-55893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH791805.1 Bacillus cereus VDM062 supercont1.4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 55542 28 96.4 37 .......C.................... CCAAGTCCTTTATGCGATAGAAGTAGGAAAGACCGGT 55607 28 96.4 37 .......C.................... TGACCGTATAGATATAGACGATACAAAAAATTCTGCT 55672 28 85.7 36 .........G...CAT............ CGAACACACAAGCTGAGGTAGATGCTTACGCTGAGC 55736 28 100.0 37 ............................ CATGTTTGTAATAGGGGCAATGATGGGTTCATTTGCT 55801 28 96.4 37 ..A......................... CTTTAAAACGTATAGTGATGATGCGGTGGATTCGCAA 55866 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 6 28 95.8 37 GTTTTATTTAAACGTAGTGGGATATAAA # Left flank : ACACTGCCACTAAACGATATGAGAAATACAGAAGCACAAAGGTTGCTGCGTGATATTGATAATTATCAAGTTATTCCCTGGTCTATATATAGAGAGAATCGTGAGCTATTTACTACATTTAAACAGGAAAAAGATTCGAAACAGCGAAAAGTATTACGAATGCAAATCGAAAAGCTTACAACCTCTATTTCTAGAAAACAGGTTCAACGATACGGAATCGAGATAAAGGAAATTGATATTCCCGGACTTCAATACATCCACACTTTAAATTGCAAGTACGATTTTGATAAAGAAAAGACAACAGGAACAGGAATTGTACTTCCGTAATTTTGCAGTGAGCCTCGTTTTTGCCAAGCAGTCAGAAAACCTTGCTATGACAAGGTCTTTCAGCATTTTATAAGAGAAGACAAAAACATGATCGATGATTCGCTGCAAAATACTGATTGATACACCTGTTAAAATGTTGCTATCATAAGGTGTATCATCCGTATATAGATAGG # Right flank : AAGTTTGTAATGAAACCATAGAAATAGAGTCCTAATTAAAAAGGGCTCTATTTCTATGGTTGATACCTTCAAATTTTTTATCTTTCATTAGATCAATTTCACATTCAAGTTCTTTGGTTTCTATATTTAAAAAGTCCATTGTTATTGCAAGAACTTTTCCATCTTTATTTCTCTTAGATCCCCATAAACGAACAACCCTATTAATTTTACTATCTTCATATATAATTTGAACTGTTCTTAATTCTTCTCCATCCACAAATTCACGATGTATCCAACACTCTTTAAATTCCAAATTCTCATCAGATTTATGCATGTTATATTTCAACATTACTTCTTCTAATTCTGGGAACCCCAAGCCTTTTTTCTCCAAACAAATATACTCAAAATCCCAAAACTCTCTAAAATGATAGATAAGCTCTTTTTGACTTTTCATCATAATTCCCCCACCCCATAATTTTTTAAGCGCTATGTATATTTGATATCTGTTACATGATTGATTT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTAAACGTAGTGGGATATAAA # Alternate repeat : GTTTTATCTAAACGTAGTGGGATATAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 3660671-3660856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH791802.1 Bacillus cereus VDM062 supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3660671 36 100.0 42 .................................... AATGGACGTTTGTTACGAAATGCACTCGTGTGCGCGTTCAAA 3660749 36 66.7 36 .A..G..G............GTG..G.G.AGA...G AATGCGTTTTAGTTACAAAACGTACTCGCAGAAAGC 3660821 36 77.8 0 .......G..............C.TA.GCT..G... | ========== ====== ====== ====== ==================================== ========================================== ================== 3 36 81.5 40 ATTGTACTTTCGTTACAAAATGTACTCATGTTAAAA # Left flank : GTCATACTTCTTTTTTCCATAAGTTAATTTTGCTGGCACTGGACTATCTGACCAAATGTCCTTTTTCAATTCCACTAAGTACATTGGATGAACAAAAAAATCATATGAAGGCAGCATGTTTTCTCATCCCTTCTCAGTTCTCTTCATTCAATGTATGCGCCTTGTCTTGTCCATACATCCGCTATCATCTATTTATATAAAATTACACTCTTGTCCCGTTCAGAAAGAAGTCGAATCTCATATCATGTTAAGGAAAAAGAATACCTTTTCAATTTAACACTCGATAAGGAGGATTTCTATGAAACGTGATATTAGAAAAGCTGTTGAAGAAATCAAAAGTGCTGGTATGGAGGATTTCTTACACCAAGATCCAAGTACTTTTGAGTGCGATGATGATAAATTCTCTCATCATAAATGTACAACAGGGTGTAAATGTACAACAGGGCGTAAATGTACAACAGGGCGTAAATGTCCAAGAACAAGATGTACTCGCGTAAAAC # Right flank : AAGAAATTTTTCTGGACAAAACGAAGTTTCTGTAAAAAATGCGAATTCTTCCCTCACGGACACGGTAGCTCTTGCGATGATGATTGTGATCATGGTAAAGACTGTCACGATGACGGGCACAAATGGAATGATTGCAGAGACGGACATAAGTTCCCATCTTGCAAAAATAAGAAATTCGATCACTTCTGGTATAAAAAACGTAATTGCTAGTTTTTTATACCCACCAAAAAAGGCCGCATTGCGGCCTTTTTTACGTTTACTGAAAATGGCTTATATCTGCAAATTGTTTTACTTTACCAAGATCTTCATCAAATTCAATCACACTAAGACTCGCGCTATGCATAAATGGCTCTCCCCATACATGTTCAATTTCAACACCTGCAAAATGCCCTACAAGTAATTTCGCTGCTGCAGCATGAGAGACAATTAAAATATTTTCCCCTTTATGCTTTTCTAAAAGAAATTGTATCCCTTCAATTACTCTTTTATGAACGGCCGCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.07, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTTTCGTTACAAAATGTACTCATGTTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GCTATACGTTCCTTACAAAATCGGCTAAAATTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //