Array 1 1924664-1924870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046115.1 Klebsiella oxytoca strain P620 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1924664 28 100.0 32 ............................ GATCTGCTCAGTCAGATTGCGGGACACTTCAC 1924724 28 100.0 32 ............................ AAAAACGAACGCGACCAGGGGATGGAGCGTTT 1924784 28 100.0 32 ............................ AGTTAACAGACAAGCGTCTAAGCCGGCTTCAT 1924844 27 82.1 0 .....T.....A....A...T...-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATCAGCAATATGCTGATAGCAAAAGGATTGCCGGGCTTTATCGCTTATGGCGTGCTGGTGGGTGAGGTTGTTGCCCCTTGTCTGTTGATTGTAGGGATTCTGACCCGTCCGGCAGCGCTGGTGCTGGCGTTTACGATGGTTGTGGCCTGGCTGATGGTGGGGACAGGCAAAACGTTCGCGCTGGATGCGGTGGGGGCCTGGGCGATTGAGAATCTGGCCTATTTCTTTATTGGCGCGCTGGCGATTGCCTTCCTCGATGCAGGGCGCTATTCCATTGGCGGAAACTCAGCCTGGCGGTAAACGCGCCAGGGTTTTCTTCCTCATCATGGCCGCATTCTGTTTACCGGGAGGTAGGTGCTCGTTTCTCCTACCCTTTTTCTGAGTGCTTTTTTAACGCATTGATTTATTAATGTTTATTGGCTGGTTTTGAAAAAAGGGTAAAACGGTTTTTTATTGATTATTGCATTATTAAACAATAAGGTAGGTGTGCCTGGCTGGA # Right flank : ACGATAACAAAGTCGTTGTAGACCTTATGCCTCTGTTTTTGCCGGATGTCGGCCTGGACTTACCCGGCCCATAACGTTTCACTCCGCGTTGGCGGCCGAGCTCTGGAAAGGAAAATGCTACCCGACTGTTTACCGGGTAGCAGAGGTCATGCGGAATAATTAAGCGAGAATCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAACCTTCAGCAATTTCCGCATCGGTTAACGTCATGGTACTGCTGACGGTATATTCCCCCGAAACCACTTTGGTTTTACAGCAGCCGCAGACGCCTGCGCGACAGGCGGCGGTAACCGGCACCTTGTTGCTTTCCAGCGCTTCGAGCAGCGTGGAGCCCACCGGCGCATAAAACTCTTTTGCCGGCTGCAGTTTGCTGAACTTCAGGCCACCGGTGGCCGCAATGGCCACCGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCAAGCGCTTTGACGTCCTGCTCGA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3614745-3614351 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046115.1 Klebsiella oxytoca strain P620 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3614744 29 100.0 32 ............................. GTCGATGCGCATGTTCTGGATAGTTATTTCCA 3614683 29 100.0 32 ............................. AGTACCGGGCGAACTTAGAAACCTATGCAGAA 3614622 29 100.0 32 ............................. CGCTCAGATCTGGAAACGTTCGTATTCCAGGA 3614561 29 100.0 32 ............................. ATTCAAAACTGCAGGCACGGTTAGCCCACGGC 3614500 29 100.0 32 ............................. GTCCCCGATTCGATCAGATTAGCGCTGTATCC 3614439 29 96.6 32 ............C................ CGTTTCTGGATATGCTCGCCTGGTCTGAAGAC 3614378 28 86.2 0 .............A........G..-..T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CGCGATATTGCGGTGTTCTCGAAAGGCAACATTCAGCGTCTGGTTGGTGCGCTGGCGGAGAGCCATCGTCTTACGCTCAAGACGCGTTATCAGGTCGACTATATTGAAACGCTTTACGGCCTGGTGCGCTCCCGACTGGCGGTGGCAATTCTGCCTGAGCTTTATACCACCCATCTTCAGGATCCGGCATTGAAGATTGCGCAGCTTCAGCAGCCCGCGCTGACGCGAACCGTGGCGCTGATGCGCGGACCGCAGCCATTGCCGCCGCTGATCGAAGCGTGTTTTGCGTTATTGTTGGGCGCGCTGCGGGAAGTGAATCTGTAGAAGCCGTTGCTATCGCTGCTTGTTTTGGTGAAATGGAAGAGAGATAGCGGATTACTTTATAGTGTTCTTTAAAATCAAAAGGTTATGGATTTTTAATATAATCGTTTTGTTGCCAGGATATCGGTAGATTGTTTTGTGTGAGTAAAAATTTTATAAAACAAAAGGATATGATTAGG # Right flank : AATAAAGTCGCGCGGCTGCGGGTCCTGATAACGTTGCCGTGTTCACCCGTGAGCACATCCGTGGGCAGCGCGGCGATAAAGCCTTTATAGGCGTTGCTAAAGTTGATGTTATCGGAGAGGCGAAGCTGTTTGTACAGCCCGGCGTTTGCCCGTCTGGCTGCCGCTGCGGCTTCTGTGGGGCGGTTCTGGCCCTGCGGGTCAGAGGGTGAGTCGAGAATATTTCCGCCTGAGTTAAACGCCTGGCATGAATCGCCGCAGGCTTGTAGAACCGCGCCGGGCCGGCTTGCGTTGTCCGGCGACTTACCGTAACCTGCCCGCTGAGAACGTTTTTATCTCTCAATGACTCGGGGTGCCCTTCCTTGTGAAGGCTGAGAAAAACCCGTACCACCTGATCTGGATAATGCCAGCGTAGGGAAGTCAGAGACCGCAGGGTCGTCGCTTCTTCATCGCCTGGCGGGAGCAAACGATGTCTGACCTGCTGAACCCCGCGCATATTGCCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4281577-4281182 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046115.1 Klebsiella oxytoca strain P620 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4281576 29 100.0 32 ............................. TATTTTGCAGTCTGAGTCTTTAAACCTTTTAT 4281515 29 100.0 32 ............................. AGCTGGGATTAACGGACAGGCCACCGAACGAG 4281454 29 100.0 32 ............................. AAGCCGCAGCTATGACCGGCACGCTGGCGCGC 4281393 29 100.0 32 ............................. TAATACGCGATTGCTACAGTCTTCTGTGATGC 4281332 29 100.0 32 ............................. TTATACAGAAACTCCGGATCGCGCAGGTCTGT 4281271 29 100.0 32 ............................. ATATTTCTGGCATTTTAGTAATTGCTTCTACA 4281210 29 89.7 0 .............C...........TT.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGGTTGCCAGAGGGATTGGCGGAAGGTGCTCGACATTTCTCGCCCGCCGTGAGCCAGGACGAGGGATGGTCTGGAATCATCGGTAAATAGCGCGTGATAGGCCGTAGCCAGGCGTTTATACATTGCGTTTGCGGTCGCCATTGTTGGCAACCCAACGTAGAGACCGTGGCCTTTATTGGCCGACATCAGGCGGTGAGTCAAGATTAACGCAGCTTCCGTTTTGCCTGCTCCGGTAACGTCCTCCAGAATAACTAACTGAGGGCCTGGAGCCGAGATATCCAGCGTGCTTGCCCGCTTTTGAAGTGGGGTCAGTGTGTGAATGAAAGGAAACAGCGCCTGGTGGTTCTGGTAGTGGCTATGCTGTGATGGCGGCGGAATTTTTAAGATGGCTTTCTGAGCTTTTTCACAGGCGAGGGGCCAATACTCTTTCAGGGGCATAGCGTTGTTGAGCAATGGAAACTGTGTCTCATCTGAGCCCATCCAGTCAGCAAGGGTGGTAA # Right flank : TACCCCAGCACTTGAGTCGTTCTACTTTCAGAAAGGGGACACTTTTGTTCCCTTTCCCCTTATTCTCTAACCTTTCCATTGCTTCTCAGTACAGCAAAGTCCGGCTCCGGACAATTTTGACCAAAGTTTTCTGTCCACGGAAATGGCGCGCCGTTTTTTACATAGCGCTGATAGAGACGTTTTACCGATGTTGGGTCCTGAGCCCATATCCAGTCCGTCGCGTTGCACAGCACGGCGGCATAGGCCTGTGATTTTCTCGGCAATAGATCGGCGGCTTTCTCGGCAAGCTTCACCGCCTGCCAGCGATAGTGCATAAAATGATTATCCTGTTTCGGCTGGGATAGCTGCACACGTTGGCGCTCACCGGCGCTAATCCACGATTTGGCGGCCGGCTTACCTTCTAAACCCGAATCGTAATAAGGCCATGAATATCCACCGCCATAGAGTGCAAAATCCGGCGCCATCTCATAGCCCGTCAATTCCATTCCCTGATGACGCAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //