Array 1 2089657-2090660 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABFH02000001.1 Salmonella enterica subsp. enterica serovar Virchow str. SL491 gcontig_1112707573884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2089657 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 2089718 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 2089779 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 2089840 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 2089901 29 96.6 32 ........................G.... CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 2089962 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 2090023 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 2090084 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 2090145 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 2090206 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 2090267 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 2090328 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 2090389 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 2090450 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 2090511 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 2090572 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 2090633 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2106930-2110315 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABFH02000001.1 Salmonella enterica subsp. enterica serovar Virchow str. SL491 gcontig_1112707573884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2106930 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 2106991 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 2107052 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 2107113 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 2107174 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 2107235 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 2107296 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 2107357 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 2107418 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 2107479 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 2107540 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 2107601 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 2107662 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 2107723 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 2107784 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 2107845 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 2107906 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 2107967 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 2108028 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 2108089 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 2108150 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 2108211 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 2108272 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 2108333 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 2108394 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 2108455 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 2108516 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 2108577 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 2108638 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 2108699 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 2108760 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 2108821 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 2108882 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 2108943 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 2109004 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 2109065 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 2109126 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 2109187 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 2109248 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 2109309 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 2109370 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 2109431 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 2109492 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 2109554 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 2109615 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 2109676 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 2109737 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 2109798 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 2109859 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 2109920 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 2109981 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 2110042 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 2110103 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 2110164 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 2110225 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2110286 29 93.1 0 A...........T................ | A [2110312] ========== ====== ====== ====== ============================= ================================= ================== 56 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //